Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002416

Physical Location & Seq

Genomic Coordinates Reverse (-)

9020076 .. 9023282

Gene Structure 3207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G157600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGGTTCCTGGGTTCATAGCAGTTTTTGTGTTGCTAGAATATTAGGCCTGTTGCTTCTCGTTGGTTTTGTTCCTAATGGCGGTGCAAGTGAAGAGGCATCATGTGATTTGTTCAAAGGGAGATGGGTTCTGGACGAAAACTACCCACTCTACAATCCATCGTCCTGCCCCTTCATCGAGCGCGAGTTCAGCTGCCAAAAGAATGGCCGCCCTGACCATTTTTACACCCAATACAGATGGCAACCACATGACTGTGACTTAGCAAGGTTTGACGGGGTTGACTTTTTAGAACGATTTAGAGAGAAGAGCATCATGTTCGTTGGAGATTCATTAAGCCGAAATCAATGGCAGTCCTTGACATGTATGCTTCACTCAGCCGTCCCAAACGCTAACTACAATGTCACAAGAGTAGACGATGTATCTATCTTCACTTTTACGGATTATGGACTGAAAGTGATGCTAGACCGCAATGTGTATCTAGTAGATGTTGTAAGAGAAAAGATTGGTAGGGTTTTGAAGCTTGATTCAATTGTGGGAGGCAAGTTATGGAAGGAGATTGACATGCTCATCTTCAACACATGGCATTGGTGGAATCGCAGAGGACCCTCTCAGCCATGGGATTATGTTGAAGTAGGAGGCCGGGTCAGCAAAGACATTGACCGGATGGTTGCTTTTGAGAAGGCACTCATGACTTGGGCTGGATGGGTGGATTCAAACATTGATCCTGCAAAAACTAAAGTTTTCTTCCAAGGAATTTCTCCCTCTCATTACAATGGGAGCCAATGGGATGAGCCAAAGGCAAGAAGTTGTGTAGGACAGAAGGAGCCTTTGCTTGGGTCGACATATCCAGGAGGTTTGCCACCAGCTCTGAGTGTGCTGAAGAACGCCCTAAGCAAAATCACAAAGCCTGTGACATTGCTAGATGTAACAAACCTGTCGCTCCTGCGCAAAGATGGGCACCCTTCAATCTATGGGTTGGGAGGCACCACAGCAATGGATTGTAGTCATTGGTGCCTTTGTGGAGTCCCAGATACTTGGAACGAGATTCTTTACAATTTTATTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

356

Amino Acids

40.35

Weight (kDa)

6.45

Isoelectric Point (pI)

37.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14850 AT3G14850
fragaria_vesca	FvH4_3g17810 FvH4_3g17820 FvH4_3g17830
malus_domestica	MD03G1246700.v1.1 MD11G1262000.v1.1 MD11G1268700.v1.1 MD11G1268800.v1.1 MD11G1268900.v1.1
prunus_persica	Prupe.4G157200_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157500_v2.0.a1 Prupe.4G157600_v2.0.a1
pyrus_communis	pycom03g19570 pycom11g23100 pycom11g23770
rosa_chinensis	RchiOBHm_Chr5g0029591 RchiOBHm_Chr5g0029601 RchiOBHm_Chr5g0029611
rosa_laevigata	RLG00000033185 RLG00000033186 RLG00000033187
rosa_multiflora	Rmu_sc0001608.1_g000005 Rmu_sc0001608.1_g000006
rosa_roxburghii	Rroxscaffold_1G00050310 Rroxscaffold_1G00050320
rosa_samantha	Rh5AG207700 Rh5BG206200 Rh5BG206300 Rh5BG206400 Rh5CG228300 Rh5CG228400 Rh5CG228500 Rh5DG210000 Rh5DG210100
rosa_wichuraiana	Rw5G018880 Rw5G018890 Rw5G018900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	947
AccB1I	GGYRCC	3 cut(s)	957, 983, 1011
AccI	GTMKAC	2 cut(s)	411, 839
AccII	CGCG	1 cut(s)	183
AciI	CCGC	3 cut(s)	81, 208, 466
AclWI	GGATC	1 cut(s)	716
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	753
AcuI	CTGAAG	1 cut(s)	899
AfiI	CCNNNNNNNGG	2 cut(s)	80, 833
AflIII	ACRYGT	1 cut(s)	359
AgsI	TTSAA	7 cut(s)	115, 517, 528, 574, 629, 714, 966
AjnI	CCWGG	2 cut(s)	8, 847
AluBI	AGCT	3 cut(s)	192, 520, 866
AluI	AGCT	3 cut(s)	192, 520, 866
AlwI	GGATC	1 cut(s)	716
AoxI	GGCC	3 cut(s)	46, 205, 637
ApeKI	GCWGC	1 cut(s)	192
ApoI	RAATTY	1 cut(s)	753
AspLEI	GCGC	2 cut(s)	183, 948
AspS9I	GGNCC	1 cut(s)	602
AsuC2I	CCSGG	1 cut(s)	641
AvaII	GGWCC	1 cut(s)	602
BaeGI	GKGCMC	1 cut(s)	960
BanI	GGYRCC	3 cut(s)	957, 983, 1011
BbvI	GCAGC	1 cut(s)	179
BccI	CCATC	6 cut(s)	117, 166, 231, 658, 696, 947
BceAI	ACGGC	1 cut(s)	362
BcgI	CGANNNNNNTGC	2 cut(s)	298, 332
BciT130I	CCWGG	2 cut(s)	10, 849
BcnI	CCSGG	1 cut(s)	641
BfaI	CTAG	4 cut(s)	36, 461, 479, 920
BisI	GCNGC	2 cut(s)	193, 208
BlsI	GCNGC	2 cut(s)	194, 209
Bme1390I	CCNGG	3 cut(s)	10, 641, 849
Bme18I	GGWCC	1 cut(s)	602
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	7 cut(s)	7, 604, 779, 825, 959, 985, 1013
BmrFI	CCNGG	3 cut(s)	10, 641, 849
BmsI	GCATC	3 cut(s)	107, 318, 447
Bpu10I	CCTNAGC	1 cut(s)	890
BpuMI	CCSGG	1 cut(s)	641
BsaJI	CCNNGG	3 cut(s)	9, 614, 748
BsaWI	WCCGGW	1 cut(s)	660
BsaXI	ACNNNNNCTCC	2 cut(s)	627, 657
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 833
Bse3DI	GCAATG	3 cut(s)	475, 914, 999
BseBI	CCWGG	2 cut(s)	10, 849
BseDI	CCNNGG	3 cut(s)	9, 614, 748
BseGI	GGATG	3 cut(s)	669, 707, 793
BseLI	CCNNNNNNNGG	2 cut(s)	80, 833
BseMI	GCAATG	3 cut(s)	475, 914, 999
BseMII	CTCAG	3 cut(s)	387, 623, 860
BseSI	GKGCMC	1 cut(s)	960
BseXI	GCAGC	1 cut(s)	179
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	3 cut(s)	48, 207, 639
BshNI	GGYRCC	3 cut(s)	957, 983, 1011
BsiSI	CCGG	2 cut(s)	640, 661
BslFI	GGGAC	2 cut(s)	365, 1010
BslI	CCNNNNNNNGG	2 cut(s)	80, 833
BsmFI	GGGAC	2 cut(s)	365, 1010
BsnI	GGCC	3 cut(s)	48, 207, 639
Bsp1286I	GDGCHC	1 cut(s)	960
Bsp143I	GATC	1 cut(s)	721
Bsp19I	CCATGG	1 cut(s)	614
BspACI	CCGC	3 cut(s)	81, 208, 466
BspANI	GGCC	3 cut(s)	48, 207, 639
BspCNI	CTCAG	3 cut(s)	386, 622, 861
BspFNI	CGCG	1 cut(s)	183
BspHI	TCATGA	1 cut(s)	687
BspLI	GGNNCC	7 cut(s)	7, 604, 779, 825, 959, 985, 1013
BspPI	GGATC	1 cut(s)	716
BspQI	GCTCTTC	1 cut(s)	299
BspT107I	GGYRCC	3 cut(s)	957, 983, 1011
BsrDI	GCAATG	3 cut(s)	475, 914, 999
BssECI	CCNNGG	3 cut(s)	9, 614, 748
BssMI	GATC	1 cut(s)	721
BssT1I	CCWWGG	2 cut(s)	614, 748
Bst2UI	CCWGG	2 cut(s)	10, 849
Bst4CI	ACNGT	1 cut(s)	254
Bst6I	CTCTTC	2 cut(s)	87, 299
BstDEI	CTNAG	5 cut(s)	259, 373, 609, 869, 890
BstDSI	CCRYGG	1 cut(s)	614
BstF5I	GGATG	3 cut(s)	669, 707, 793
BstFNI	CGCG	1 cut(s)	183
BstHHI	GCGC	2 cut(s)	183, 948
BstKTI	GATC	1 cut(s)	724
BstMBI	GATC	1 cut(s)	721
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 645
BstNI	CCWGG	2 cut(s)	10, 849
BstNSI	RCATGY	2 cut(s)	363, 565
BstSCI	CCNGG	3 cut(s)	8, 639, 847
BstSLI	GKGCMC	1 cut(s)	960
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	179
BstXI	CCANNNNNNTGG	3 cut(s)	203, 994, 1035
BsuRI	GGCC	3 cut(s)	48, 207, 639
BtgI	CCRYGG	1 cut(s)	614
BtsCI	GGATG	3 cut(s)	669, 707, 793
CciI	TCATGA	1 cut(s)	687
CfoI	GCGC	2 cut(s)	183, 948
Cfr13I	GGNCC	1 cut(s)	602
CviAII	CATG	8 cut(s)	102, 248, 313, 360, 562, 579, 615, 688
DdeI	CTNAG	5 cut(s)	259, 373, 609, 869, 890
DpnI	GATC	1 cut(s)	723
DpnII	GATC	1 cut(s)	721
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	2 cut(s)	87, 299
EarI	CTCTTC	2 cut(s)	87, 299
Eco130I	CCWWGG	2 cut(s)	614, 748
Eco147I	AGGCCT	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	602
Eco57I	CTGAAG	1 cut(s)	899
EcoO109I	RGGNCCY	1 cut(s)	602
EcoRII	CCWGG	2 cut(s)	8, 847
EcoT14I	CCWWGG	2 cut(s)	614, 748
ErhI	CCWWGG	2 cut(s)	614, 748
FaeI	CATG	8 cut(s)	105, 251, 316, 363, 565, 582, 618, 691
FaqI	GGGAC	2 cut(s)	365, 1010
FatI	CATG	8 cut(s)	101, 247, 312, 359, 561, 578, 614, 687
FblI	GTMKAC	2 cut(s)	411, 839
Fnu4HI	GCNGC	2 cut(s)	193, 208
FokI	GGATG	3 cut(s)	676, 714, 800
Fsp4HI	GCNGC	2 cut(s)	193, 208
FspBI	CTAG	4 cut(s)	36, 461, 479, 920
FspI	TGCGCA	1 cut(s)	947
GlaI	GCGC	2 cut(s)	182, 947
GluI	GCNGC	2 cut(s)	193, 208
HaeIII	GGCC	3 cut(s)	48, 207, 639
HapII	CCGG	2 cut(s)	640, 661
HhaI	GCGC	2 cut(s)	183, 948
Hin1II	CATG	8 cut(s)	105, 251, 316, 363, 565, 582, 618, 691
Hin6I	GCGC	2 cut(s)	181, 946
HinP1I	GCGC	2 cut(s)	181, 946
HincII	GTYRAC	2 cut(s)	280, 840
HindII	GTYRAC	2 cut(s)	280, 840
HindIII	AAGCTT	1 cut(s)	518
HinfI	GANTC	6 cut(s)	326, 524, 592, 710, 1023, 1045
HpaII	CCGG	2 cut(s)	640, 661
Hpy166II	GTNNAC	3 cut(s)	280, 412, 840
Hpy188I	TCNGA	1 cut(s)	870
Hpy188III	TCNNGA	2 cut(s)	131, 688
Hpy8I	GTNNAC	3 cut(s)	280, 412, 840
HpyAV	CCTTC	5 cut(s)	181, 544, 673, 814, 972
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4V	TGCA	2 cut(s)	86, 728
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 645
HpyF3I	CTNAG	5 cut(s)	259, 373, 609, 869, 890
Hsp92II	CATG	8 cut(s)	105, 251, 316, 363, 565, 582, 618, 691
HspAI	GCGC	2 cut(s)	181, 946
Kzo9I	GATC	1 cut(s)	721
LguI	GCTCTTC	1 cut(s)	299
LmnI	GCTCC	3 cut(s)	777, 823, 945
Lsp1109I	GCAGC	1 cut(s)	179
LweI	GCATC	3 cut(s)	107, 318, 447
MaeI	CTAG	4 cut(s)	36, 461, 479, 920
MaeIII	GTNAC	4 cut(s)	254, 400, 910, 925
MalI	GATC	1 cut(s)	723
MboI	GATC	1 cut(s)	721
MboII	GAAGA	6 cut(s)	104, 316, 418, 562, 736, 892
MfeI	CAATTG	1 cut(s)	528
MhlI	GDGCHC	1 cut(s)	960
MluCI	AATT	3 cut(s)	528, 753, 1054
MlyI	GAGTC	1 cut(s)	1032
MmeI	TCCRAC	1 cut(s)	301
MnlI	CCTC	8 cut(s)	88, 530, 593, 616, 629, 772, 845, 974
MseI	TTAA	1 cut(s)	332
MslI	CAYNNNNRTG	3 cut(s)	252, 771, 992
MspA1I	CMGCKG	1 cut(s)	192
MspI	CCGG	2 cut(s)	640, 661
MspR9I	CCNGG	3 cut(s)	10, 641, 849
MunI	CAATTG	1 cut(s)	528
MvaI	CCWGG	2 cut(s)	10, 849
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	2 cut(s)	189, 645
NciI	CCSGG	1 cut(s)	641
NcoI	CCATGG	1 cut(s)	614
NdeII	GATC	1 cut(s)	721
NlaIII	CATG	8 cut(s)	105, 251, 316, 363, 565, 582, 618, 691
NlaIV	GGNNCC	7 cut(s)	7, 604, 779, 825, 959, 985, 1013
NmuCI	GTSAC	3 cut(s)	254, 400, 910
NsbI	TGCGCA	1 cut(s)	947
NspI	RCATGY	2 cut(s)	363, 565
PagI	TCATGA	1 cut(s)	687
PceI	AGGCCT	1 cut(s)	48
PciI	ACATGT	1 cut(s)	359
PciSI	GCTCTTC	1 cut(s)	299
PfeI	GAWTC	5 cut(s)	326, 524, 592, 710, 1045
PfoI	TCCNGGA	1 cut(s)	847
PkrI	GCNGC	2 cut(s)	194, 209
PleI	GAGTC	1 cut(s)	1031
PpsI	GAGTC	1 cut(s)	1031
PpuMI	RGGWCCY	1 cut(s)	602
PscI	ACATGT	1 cut(s)	359
Psp5II	RGGWCCY	1 cut(s)	602
Psp6I	CCWGG	2 cut(s)	8, 847
PspGI	CCWGG	2 cut(s)	8, 847
PspN4I	GGNNCC	7 cut(s)	7, 604, 779, 825, 959, 985, 1013
PspPI	GGNCC	1 cut(s)	602
PspPPI	RGGWCCY	1 cut(s)	602
PvuII	CAGCTG	1 cut(s)	192
RseI	CAYNNNNRTG	3 cut(s)	252, 771, 992
SalI	GTCGAC	1 cut(s)	838
SapI	GCTCTTC	1 cut(s)	299
SaqAI	TTAA	1 cut(s)	332
SatI	GCNGC	2 cut(s)	193, 208
Sau3AI	GATC	1 cut(s)	721
Sau96I	GGNCC	1 cut(s)	602
SchI	GAGTC	1 cut(s)	1032
ScrFI	CCNGG	3 cut(s)	10, 641, 849
SduI	GDGCHC	1 cut(s)	960
SetI	ASST	6 cut(s)	194, 269, 522, 856, 868, 936
SfaNI	GCATC	3 cut(s)	107, 318, 447
SinI	GGWCC	1 cut(s)	602
SmiMI	CAYNNNNRTG	3 cut(s)	252, 771, 992
Sse9I	AATT	3 cut(s)	528, 753, 1054
SseBI	AGGCCT	1 cut(s)	48
SsiI	CCGC	3 cut(s)	81, 208, 466
SspI	AATATT	1 cut(s)	42
SspMI	CTAG	4 cut(s)	36, 461, 479, 920
StuI	AGGCCT	1 cut(s)	48
StyD4I	CCNGG	3 cut(s)	8, 639, 847
StyI	CCWWGG	2 cut(s)	614, 748
TaaI	ACNGT	1 cut(s)	254
TaqI	TCGA	2 cut(s)	177, 839
TasI	AATT	3 cut(s)	528, 753, 1054
TauI	GCSGC	1 cut(s)	210
TfiI	GAWTC	5 cut(s)	326, 524, 592, 710, 1045
Tru1I	TTAA	1 cut(s)	332
Tru9I	TTAA	1 cut(s)	332
TseFI	GTSAC	3 cut(s)	254, 400, 910
TseI	GCWGC	1 cut(s)	192
Tsp45I	GTSAC	3 cut(s)	254, 400, 910
TspDTI	ATGAA	3 cut(s)	5, 163, 318
TspGWI	ACGGA	1 cut(s)	452
VpaK11BI	GGWCC	1 cut(s)	602
XapI	RAATTY	1 cut(s)	753
XceI	RCATGY	2 cut(s)	363, 565
XmiI	GTMKAC	2 cut(s)	411, 839
XspI	CTAG	4 cut(s)	36, 461, 479, 920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.