Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002416

Physical Location & Seq

Genomic Coordinates Reverse (-)

8994941 .. 8996612

Gene Structure 1672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G157200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

GCAGGCGCAGGGCATGATAAACAATCAAATGGCTGCAATTACTTTCAAGGAAGTTGGATAATTGATCCTTCAGATATACATCCACTCTACGATTCATCGAAGTGTCCATTCATCAATCGAGCATTCGATTGCCTGACGAACGGTAGACCTGATAAAGAGTACCTCAGATATAGATGGAAGCCAACTGGATGTGATCTTCCAAGATTCAATGGTGAGGACATGCTGAGGAGGTTAAAGGGGAAGAAGATATTATTCGTGGGGGACTCTCTAAGCTACAACCAATGGCAGTCACTAGTATGCATGTTGCATGCTGCTGTGCCCCAAACCAATTATACTCTAACAAGCAAAGGTGGCCTCTCCACGTTTTATTTGCCTGATTATGGAGTTTCTGTGTCGCTATCCCGAAATCCGTTTCTAGTGGATCTAGTCAAAACAAAAGTGGGCAGGGTTTTGAGGCTTGACTCCATTGAAAATGGCAAGACATGGAAAGGATACGACATGCTTATCTTCAATACTTGGCATTGGTGGCTCCATACGGGAAGGCTACAATCTTTCAGGTGGGACTACATTGACGTAGGAGGAAAGGTGCACATGGATATGGATCGTTTGGATGCTTTTAGGGAGGGATTAACTACTTGGTCCAAGTGGGTGAACTCTAATGTTCATTCCAACAACACCAAAGTTTTCTTTCAAGGCATTTCTCCAACCCACAACAATGGAAAAGAATGGGGCTCAAATTCAACAACTTGCAATGGAGAAACTCAACCTATAAGTGGCTCAATATATCCAGGAAGCTCTCCACCTGCAACAACTGTGGTCAACGACGTGTTGAGTAAAATGTCAACTAGCACCCCAGTAACTTTGCTGGACATAACTTTACTTTCGCAGCTGAGAAAAGATGGGCACCCTTCTGTTTATTCCGGTGATGGGGAGAAGGGAAATGATTGTAGCCACTGGTGCCTTGCTGGTGTCCCTGATACCTGGAATGAACTTTTGTATGCAATTCTTGTGACTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

340

Amino Acids

38.16

Weight (kDa)

8.35

Isoelectric Point (pI)

34.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14850 AT3G14850
fragaria_vesca	FvH4_3g17810 FvH4_3g17820 FvH4_3g17830
malus_domestica	MD03G1246700.v1.1 MD11G1262000.v1.1 MD11G1268700.v1.1 MD11G1268800.v1.1 MD11G1268900.v1.1
prunus_persica	Prupe.4G157200_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157500_v2.0.a1 Prupe.4G157600_v2.0.a1
pyrus_communis	pycom03g19570 pycom11g23100 pycom11g23770
rosa_chinensis	RchiOBHm_Chr5g0029591 RchiOBHm_Chr5g0029601 RchiOBHm_Chr5g0029611
rosa_laevigata	RLG00000033185 RLG00000033186 RLG00000033187
rosa_multiflora	Rmu_sc0001608.1_g000005 Rmu_sc0001608.1_g000006
rosa_roxburghii	Rroxscaffold_1G00050310 Rroxscaffold_1G00050320
rosa_samantha	Rh5AG207700 Rh5BG206200 Rh5BG206300 Rh5BG206400 Rh5CG228300 Rh5CG228400 Rh5CG228500 Rh5DG210000 Rh5DG210100
rosa_wichuraiana	Rw5G018880 Rw5G018890 Rw5G018900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	811
Acc36I	ACCTGC	1 cut(s)	811
AccB1I	GGYRCC	2 cut(s)	903, 957
AccI	GTMKAC	1 cut(s)	145
AclWI	GGATC	3 cut(s)	59, 429, 609
AcsI	RAATTY	1 cut(s)	736
AcuI	CTGAAG	1 cut(s)	54
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	3 cut(s)	380, 773, 927
AflIII	ACRYGT	1 cut(s)	825
AgsI	TTSAA	6 cut(s)	47, 208, 470, 511, 692, 741
AhlI	ACTAGT	1 cut(s)	292
AjiI	CACGTC	1 cut(s)	826
AjnI	CCWGG	2 cut(s)	787, 980
AluBI	AGCT	3 cut(s)	273, 795, 889
AluI	AGCT	3 cut(s)	273, 795, 889
Alw21I	GWGCWC	1 cut(s)	591
Alw44I	GTGCAC	1 cut(s)	587
AlwI	GGATC	3 cut(s)	59, 429, 609
AoxI	GGCC	1 cut(s)	352
ApaLI	GTGCAC	1 cut(s)	587
ApeKI	GCWGC	3 cut(s)	33, 311, 886
ApoI	RAATTY	1 cut(s)	736
AspLEI	GCGC	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	639
AsuHPI	GGTGA	3 cut(s)	224, 661, 935
AvaII	GGWCC	1 cut(s)	639
BaeGI	GKGCMC	3 cut(s)	321, 591, 906
BanI	GGYRCC	2 cut(s)	903, 957
BanII	GRGCYC	1 cut(s)	734
Bbv12I	GWGCWC	1 cut(s)	591
BbvCI	CCTCAGC	1 cut(s)	224
BbvI	GCAGC	3 cut(s)	20, 298, 898
BccI	CCATC	3 cut(s)	168, 893, 920
BciT130I	CCWGG	2 cut(s)	789, 982
BciVI	GTATCC	1 cut(s)	485
BcuI	ACTAGT	1 cut(s)	292
BfaI	CTAG	4 cut(s)	293, 416, 425, 846
BfuAI	ACCTGC	1 cut(s)	811
BfuI	GTATCC	1 cut(s)	485
BisI	GCNGC	3 cut(s)	34, 312, 887
BlsI	GCNGC	3 cut(s)	35, 313, 888
Bme1390I	CCNGG	2 cut(s)	789, 982
Bme18I	GGWCC	1 cut(s)	639
BmgBI	CACGTC	1 cut(s)	826
BmgT120I	GGNCC	1 cut(s)	639
BmiI	GGNNCC	3 cut(s)	530, 905, 959
BmrFI	CCNGG	2 cut(s)	789, 982
BmrI	ACTGGG	1 cut(s)	848
BmsI	GCATC	1 cut(s)	601
BmuI	ACTGGG	1 cut(s)	848
Bpu10I	CCTNAGC	1 cut(s)	224
BsaBI	GATNNNNATC	2 cut(s)	78, 600
BsaWI	WCCGGW	1 cut(s)	920
BsaXI	ACNNNNNCTCC	4 cut(s)	375, 405, 570, 600
Bsc4I	CCNNNNNNNGG	3 cut(s)	380, 773, 927
Bse1I	ACTGG	3 cut(s)	190, 854, 959
Bse3DI	GCAATG	1 cut(s)	757
Bse8I	GATNNNNATC	2 cut(s)	78, 600
BseBI	CCWGG	2 cut(s)	789, 982
BseGI	GGATG	3 cut(s)	79, 194, 616
BseJI	GATNNNNATC	2 cut(s)	78, 600
BseLI	CCNNNNNNNGG	3 cut(s)	380, 773, 927
BseMI	GCAATG	1 cut(s)	757
BseMII	CTCAG	3 cut(s)	178, 215, 881
BseNI	ACTGG	3 cut(s)	190, 854, 959
BseRI	GAGGAG	1 cut(s)	241
BseSI	GKGCMC	3 cut(s)	321, 591, 906
BseXI	GCAGC	3 cut(s)	20, 298, 898
BshFI	GGCC	1 cut(s)	354
BshNI	GGYRCC	2 cut(s)	903, 957
BsiHKAI	GWGCWC	1 cut(s)	591
BsiSI	CCGG	1 cut(s)	921
BslFI	GGGAC	3 cut(s)	275, 575, 956
BslI	CCNNNNNNNGG	3 cut(s)	380, 773, 927
BsmFI	GGGAC	3 cut(s)	275, 575, 956
BsmI	GAATGC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	354
Bsp1286I	GDGCHC	4 cut(s)	321, 591, 734, 906
Bsp143I	GATC	4 cut(s)	64, 193, 421, 601
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	3 cut(s)	177, 216, 882
BspLI	GGNNCC	3 cut(s)	530, 905, 959
BspMI	ACCTGC	1 cut(s)	811
BspPI	GGATC	3 cut(s)	59, 429, 609
BspT107I	GGYRCC	2 cut(s)	903, 957
BsrDI	GCAATG	1 cut(s)	757
BsrI	ACTGG	3 cut(s)	190, 854, 959
BssMI	GATC	4 cut(s)	64, 193, 421, 601
Bst2UI	CCWGG	2 cut(s)	789, 982
Bst4CI	ACNGT	2 cut(s)	143, 814
BstC8I	GCNNGC	2 cut(s)	4, 309
BstDEI	CTNAG	5 cut(s)	164, 224, 269, 890, 1014
BstF5I	GGATG	3 cut(s)	79, 194, 616
BstHHI	GCGC	1 cut(s)	8
BstKTI	GATC	4 cut(s)	67, 196, 424, 604
BstMBI	GATC	4 cut(s)	64, 193, 421, 601
BstMWI	GCNNNNNNNGC	3 cut(s)	351, 526, 957
BstNI	CCWGG	2 cut(s)	789, 982
BstNSI	RCATGY	4 cut(s)	223, 304, 311, 502
BstSCI	CCNGG	2 cut(s)	787, 980
BstSLI	GKGCMC	3 cut(s)	321, 591, 906
BstV1I	GCAGC	3 cut(s)	20, 298, 898
BstX2I	RGATCY	1 cut(s)	421
BstXI	CCANNNNNNTGG	1 cut(s)	716
BstYI	RGATCY	1 cut(s)	421
BsuI	GTATCC	1 cut(s)	485
BsuRI	GGCC	1 cut(s)	354
BtrI	CACGTC	1 cut(s)	826
BtsCI	GGATG	3 cut(s)	79, 194, 616
BtsIMutI	CAGTG	1 cut(s)	952
BveI	ACCTGC	1 cut(s)	811
Cac8I	GCNNGC	2 cut(s)	4, 309
CfoI	GCGC	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	639
Csp6I	GTAC	1 cut(s)	160
CspCI	CAANNNNNGTGG	2 cut(s)	795, 830
CviAII	CATG	7 cut(s)	14, 220, 301, 308, 483, 499, 592
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	5 cut(s)	164, 224, 269, 890, 1014
DpnI	GATC	4 cut(s)	66, 195, 423, 603
DpnII	GATC	4 cut(s)	64, 193, 421, 601
Eco24I	GRGCYC	1 cut(s)	734
Eco47I	GGWCC	1 cut(s)	639
Eco57I	CTGAAG	1 cut(s)	54
EcoRII	CCWGG	2 cut(s)	787, 980
EcoT22I	ATGCAT	1 cut(s)	302
EcoT38I	GRGCYC	1 cut(s)	734
FaeI	CATG	7 cut(s)	17, 223, 304, 311, 486, 502, 595
FaqI	GGGAC	3 cut(s)	275, 575, 956
FatI	CATG	7 cut(s)	13, 219, 300, 307, 482, 498, 591
FblI	GTMKAC	1 cut(s)	145
Fnu4HI	GCNGC	3 cut(s)	34, 312, 887
FokI	GGATG	3 cut(s)	66, 201, 623
FriOI	GRGCYC	1 cut(s)	734
Fsp4HI	GCNGC	3 cut(s)	34, 312, 887
FspBI	CTAG	4 cut(s)	293, 416, 425, 846
GlaI	GCGC	1 cut(s)	7
GluI	GCNGC	3 cut(s)	34, 312, 887
HaeIII	GGCC	1 cut(s)	354
HapII	CCGG	1 cut(s)	921
HhaI	GCGC	1 cut(s)	8
Hin1II	CATG	7 cut(s)	17, 223, 304, 311, 486, 502, 595
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
HincII	GTYRAC	2 cut(s)	820, 843
HindII	GTYRAC	2 cut(s)	820, 843
HinfI	GANTC	4 cut(s)	92, 204, 263, 461
HpaII	CCGG	1 cut(s)	921
HphI	GGTGA	3 cut(s)	224, 661, 935
Hpy166II	GTNNAC	5 cut(s)	146, 589, 652, 820, 843
Hpy188I	TCNGA	2 cut(s)	73, 167
Hpy188III	TCNNGA	1 cut(s)	402
Hpy8I	GTNNAC	5 cut(s)	146, 589, 652, 820, 843
Hpy99I	CGWCG	1 cut(s)	827
HpyAV	CCTTC	4 cut(s)	78, 534, 918, 928
HpyCH4III	ACNGT	2 cut(s)	143, 814
HpyCH4IV	ACGT	3 cut(s)	362, 573, 825
HpyCH4V	TGCA	7 cut(s)	36, 300, 307, 589, 750, 806, 1001
HpyF10VI	GCNNNNNNNGC	3 cut(s)	351, 526, 957
HpyF3I	CTNAG	5 cut(s)	164, 224, 269, 890, 1014
HpySE526I	ACGT	3 cut(s)	362, 573, 825
Hsp92II	CATG	7 cut(s)	17, 223, 304, 311, 486, 502, 595
HspAI	GCGC	1 cut(s)	6
Kzo9I	GATC	4 cut(s)	64, 193, 421, 601
LmnI	GCTCC	1 cut(s)	534
Lsp1109I	GCAGC	3 cut(s)	20, 298, 898
LweI	GCATC	1 cut(s)	601
MaeI	CTAG	4 cut(s)	293, 416, 425, 846
MaeII	ACGT	3 cut(s)	362, 573, 825
MaeIII	GTNAC	3 cut(s)	288, 856, 1009
MalI	GATC	4 cut(s)	66, 195, 423, 603
MboI	GATC	4 cut(s)	64, 193, 421, 601
MboII	GAAGA	4 cut(s)	188, 253, 256, 499
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	4 cut(s)	321, 591, 734, 906
MluCI	AATT	5 cut(s)	37, 60, 328, 736, 1002
MlyI	GAGTC	2 cut(s)	257, 455
MmeI	TCCRAC	3 cut(s)	35, 693, 728
MnlI	CCTC	8 cut(s)	173, 208, 219, 222, 365, 447, 572, 616
Mph1103I	ATGCAT	1 cut(s)	302
MseI	TTAA	2 cut(s)	233, 629
MslI	CAYNNNNRTG	4 cut(s)	100, 295, 596, 714
MspA1I	CMGCKG	1 cut(s)	889
MspI	CCGG	1 cut(s)	921
MspR9I	CCNGG	2 cut(s)	789, 982
Mva1269I	GAATGC	1 cut(s)	122
MvaI	CCWGG	2 cut(s)	789, 982
MwoI	GCNNNNNNNGC	3 cut(s)	351, 526, 957
NdeII	GATC	4 cut(s)	64, 193, 421, 601
NlaIII	CATG	7 cut(s)	17, 223, 304, 311, 486, 502, 595
NlaIV	GGNNCC	3 cut(s)	530, 905, 959
NmuCI	GTSAC	2 cut(s)	288, 1009
NsiI	ATGCAT	1 cut(s)	302
NspI	RCATGY	4 cut(s)	223, 304, 311, 502
PaeI	GCATGC	1 cut(s)	311
PaqCI	CACCTGC	1 cut(s)	811
PctI	GAATGC	1 cut(s)	122
PfeI	GAWTC	2 cut(s)	92, 204
PfoI	TCCNGGA	1 cut(s)	787
PkrI	GCNGC	3 cut(s)	35, 313, 888
PleI	GAGTC	2 cut(s)	257, 455
PpsI	GAGTC	2 cut(s)	257, 455
Psp6I	CCWGG	2 cut(s)	787, 980
PspGI	CCWGG	2 cut(s)	787, 980
PspN4I	GGNNCC	3 cut(s)	530, 905, 959
PspPI	GGNCC	1 cut(s)	639
PsuI	RGATCY	1 cut(s)	421
PvuII	CAGCTG	1 cut(s)	889
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
RseI	CAYNNNNRTG	4 cut(s)	100, 295, 596, 714
SaqAI	TTAA	2 cut(s)	233, 629
SatI	GCNGC	3 cut(s)	34, 312, 887
Sau3AI	GATC	4 cut(s)	64, 193, 421, 601
Sau96I	GGNCC	1 cut(s)	639
SchI	GAGTC	2 cut(s)	257, 455
ScrFI	CCNGG	2 cut(s)	789, 982
SduI	GDGCHC	4 cut(s)	321, 591, 734, 906
SfaNI	GCATC	1 cut(s)	601
SinI	GGWCC	1 cut(s)	639
SmiMI	CAYNNNNRTG	4 cut(s)	100, 295, 596, 714
SpeI	ACTAGT	1 cut(s)	292
SphI	GCATGC	1 cut(s)	311
Sse9I	AATT	5 cut(s)	37, 60, 328, 736, 1002
SspMI	CTAG	4 cut(s)	293, 416, 425, 846
StyD4I	CCNGG	2 cut(s)	787, 980
TaaI	ACNGT	2 cut(s)	143, 814
TaiI	ACGT	3 cut(s)	365, 576, 828
TaqI	TCGA	3 cut(s)	98, 118, 126
TasI	AATT	5 cut(s)	37, 60, 328, 736, 1002
TfiI	GAWTC	2 cut(s)	92, 204
Tru1I	TTAA	2 cut(s)	233, 629
Tru9I	TTAA	2 cut(s)	233, 629
TscAI	CASTG	1 cut(s)	959
TseFI	GTSAC	2 cut(s)	288, 1009
TseI	GCWGC	3 cut(s)	33, 311, 886
Tsp45I	GTSAC	2 cut(s)	288, 1009
TspDTI	ATGAA	4 cut(s)	84, 100, 653, 1002
TspGWI	ACGGA	1 cut(s)	399
TspRI	CASTG	1 cut(s)	959
VneI	GTGCAC	1 cut(s)	587
VpaK11BI	GGWCC	1 cut(s)	639
XapI	RAATTY	1 cut(s)	736
XceI	RCATGY	4 cut(s)	223, 304, 311, 502
XmiI	GTMKAC	1 cut(s)	145
XspI	CTAG	4 cut(s)	293, 416, 425, 846
Zsp2I	ATGCAT	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.