Rh5BG206300

protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0002416
Physical Location & Seq
Reverse (-)
23369705 .. 23373991
4287 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG206300.1

Sequence Viewer

Length: 636 bp
ATGATGTCTCGCAATGCATTTCTGGTGGATCTAGTGAAAACAAGGACAGGCGGCAGCACGGTTCTAAAGCTTGACTCCATTGAAAACGGAAATGCATGGAAAGGATACGACATGCTTATCTTCAATACTTGGCATTGGTGGCTCCATAAAGGAAGCAAACAACCATGGGACTACATTGTCTCAGGAGGTAAGATACTCCAGGATATGGATCGCTTGGCAGCTTTTAGGGAGGGATTAACTACTTGGTCCAAATGGGTGGACTCTAATGTTGATGCTAAAACTACTAAAGTTTTCTTTCAAGGCATTTCTCCATCACATTACAATGGAAAAGAATGGAACGACACTGATTCGACAACTTGCAGTGGACAAACTCAACCTATAAGTGGTTCAACTTACCCCGGAGGTTCACCACCAGCAACAACTGTGGTCAACCATGTGTTGGCCAAAATGTCGTCTCCAGCAACTTTGCTGGACATAACGTTACTGTCGCAGTTGAGAAAAGACGGGCACCCATCTGTATATGGTTTCGGTGGGAAAGCGGGAAATGATTGTAGTCACTGGTGCCTTAGTGGTGTCCCTGATACCTGGAATGAACTATTATATGCAACTCTTGTGACTACTGACCAAAGGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

211

Amino Acids

23.32

Weight (kDa)

7.0

Isoelectric Point (pI)

39.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PC-Esterase PF13839 2 - 202 3.5e-67 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 176
AccB1I GGYRCC 2 cut(s) 507, 561
AccB7I CCANNNNNTGG 2 cut(s) 205, 439
AciI CCGC 2 cut(s) 51, 539
AclI AACGTT 1 cut(s) 479
AclWI GGATC 2 cut(s) 36, 216
AcoI YGGCCR 1 cut(s) 441
AfiI CCNNNNNNNGG 3 cut(s) 205, 383, 439
AgsI TTSAA 4 cut(s) 83, 124, 299, 390
AjnI CCWGG 2 cut(s) 198, 584
AluBI AGCT 3 cut(s) 70, 221, 633
AluI AGCT 3 cut(s) 70, 221, 633
Alw26I GTCTC 3 cut(s) 12, 184, 459
AlwI GGATC 2 cut(s) 36, 216
AoxI GGCC 1 cut(s) 441
ApeKI GCWGC 2 cut(s) 54, 218
AspS9I GGNCC 1 cut(s) 246
AsuC2I CCSGG 1 cut(s) 399
AsuHPI GGTGA 1 cut(s) 399
AvaII GGWCC 1 cut(s) 246
BaeGI GKGCMC 1 cut(s) 510
BalI TGGCCA 1 cut(s) 443
BanI GGYRCC 2 cut(s) 507, 561
BbvI GCAGC 2 cut(s) 66, 230
BccI CCATC 2 cut(s) 319, 520
BciT130I CCWGG 2 cut(s) 200, 586
BciVI GTATCC 1 cut(s) 98
BcnI CCSGG 1 cut(s) 399
BcoDI GTCTC 3 cut(s) 12, 184, 459
BfaI CTAG 2 cut(s) 32, 634
BfuI GTATCC 1 cut(s) 98
BisI GCNGC 3 cut(s) 52, 55, 219
BlsI GCNGC 3 cut(s) 53, 56, 220
Bme1390I CCNGG 3 cut(s) 200, 399, 586
Bme18I GGWCC 1 cut(s) 246
BmgT120I GGNCC 1 cut(s) 246
BmiI GGNNCC 3 cut(s) 143, 509, 563
BmrFI CCNGG 3 cut(s) 200, 399, 586
BmsI GCATC 1 cut(s) 262
BpmI CTGGAG 2 cut(s) 182, 441
BpuMI CCSGG 1 cut(s) 399
BsaBI GATNNNNATC 1 cut(s) 207
BsaJI CCNNGG 2 cut(s) 164, 397
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 383, 439
Bse1I ACTGG 1 cut(s) 563
Bse3DI GCAATG 1 cut(s) 19
Bse8I GATNNNNATC 1 cut(s) 207
BseBI CCWGG 2 cut(s) 200, 586
BseDI CCNNGG 2 cut(s) 164, 397
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 3 cut(s) 205, 383, 439
BseMI GCAATG 1 cut(s) 19
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 563
BseSI GKGCMC 1 cut(s) 510
BseXI GCAGC 2 cut(s) 66, 230
BshFI GGCC 1 cut(s) 443
BshNI GGYRCC 2 cut(s) 507, 561
BsiSI CCGG 1 cut(s) 399
BslFI GGGAC 2 cut(s) 182, 560
BslI CCNNNNNNNGG 3 cut(s) 205, 383, 439
BsmAI GTCTC 3 cut(s) 12, 184, 459
BsmBI CGTCTC 1 cut(s) 459
BsmFI GGGAC 2 cut(s) 182, 560
BsnI GGCC 1 cut(s) 443
Bsp1286I GDGCHC 1 cut(s) 510
Bsp143I GATC 2 cut(s) 28, 208
Bsp19I CCATGG 1 cut(s) 164
BspACI CCGC 2 cut(s) 51, 539
BspANI GGCC 1 cut(s) 443
BspCNI CTCAG 1 cut(s) 194
BspLI GGNNCC 3 cut(s) 143, 509, 563
BspPI GGATC 2 cut(s) 36, 216
BspT107I GGYRCC 2 cut(s) 507, 561
BsrDI GCAATG 1 cut(s) 19
BsrI ACTGG 1 cut(s) 563
BssECI CCNNGG 2 cut(s) 164, 397
BssMI GATC 2 cut(s) 28, 208
BssT1I CCWWGG 1 cut(s) 164
Bst2UI CCWGG 2 cut(s) 200, 586
Bst4CI ACNGT 3 cut(s) 61, 424, 486
BstDEI CTNAG 2 cut(s) 181, 566
BstDSI CCRYGG 1 cut(s) 164
BstKTI GATC 2 cut(s) 31, 211
BstMAI GTCTC 3 cut(s) 12, 184, 459
BstMBI GATC 2 cut(s) 28, 208
BstMWI GCNNNNNNNGC 1 cut(s) 139
BstNI CCWGG 2 cut(s) 200, 586
BstNSI RCATGY 1 cut(s) 115
BstSCI CCNGG 3 cut(s) 198, 397, 584
BstSLI GKGCMC 1 cut(s) 510
BstV1I GCAGC 2 cut(s) 66, 230
BstX2I RGATCY 1 cut(s) 28
BstXI CCANNNNNNTGG 1 cut(s) 256
BstYI RGATCY 1 cut(s) 28
BsuI GTATCC 1 cut(s) 98
BsuRI GGCC 1 cut(s) 443
BtgI CCRYGG 1 cut(s) 164
BtsI GCAGTG 1 cut(s) 367
BtsIMutI CAGTG 3 cut(s) 342, 367, 556
Cfr13I GGNCC 1 cut(s) 246
CspCI CAANNNNNGTGG 2 cut(s) 405, 440
CviAII CATG 4 cut(s) 96, 112, 165, 434
CviJI RGCY 5 cut(s) 70, 142, 221, 443, 633
CviKI_1 RGCY 5 cut(s) 70, 142, 221, 443, 633
DdeI CTNAG 2 cut(s) 181, 566
DpnI GATC 2 cut(s) 30, 210
DpnII GATC 2 cut(s) 28, 208
DrdI GACNNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 176
EaeI YGGCCR 1 cut(s) 441
Eco130I CCWWGG 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 246
EcoRII CCWGG 2 cut(s) 198, 584
EcoT14I CCWWGG 1 cut(s) 164
EcoT22I ATGCAT 2 cut(s) 19, 97
ErhI CCWWGG 1 cut(s) 164
Esp3I CGTCTC 1 cut(s) 459
FaeI CATG 4 cut(s) 99, 115, 168, 437
FaqI GGGAC 2 cut(s) 182, 560
FatI CATG 4 cut(s) 95, 111, 164, 433
FauI CCCGC 1 cut(s) 532
Fnu4HI GCNGC 3 cut(s) 52, 55, 219
Fsp4HI GCNGC 3 cut(s) 52, 55, 219
FspBI CTAG 2 cut(s) 32, 634
GluI GCNGC 3 cut(s) 52, 55, 219
GsuI CTGGAG 2 cut(s) 182, 441
HaeIII GGCC 1 cut(s) 443
HapII CCGG 1 cut(s) 399
Hin1II CATG 4 cut(s) 99, 115, 168, 437
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 3 cut(s) 74, 260, 347
HpaII CCGG 1 cut(s) 399
HphI GGTGA 1 cut(s) 399
Hpy166II GTNNAC 4 cut(s) 259, 365, 407, 430
Hpy188III TCNNGA 1 cut(s) 183
Hpy8I GTNNAC 4 cut(s) 259, 365, 407, 430
HpyCH4III ACNGT 3 cut(s) 61, 424, 486
HpyCH4IV ACGT 1 cut(s) 479
HpyCH4V TGCA 4 cut(s) 17, 95, 360, 605
HpyF10VI GCNNNNNNNGC 1 cut(s) 139
HpyF3I CTNAG 2 cut(s) 181, 566
HpySE526I ACGT 1 cut(s) 479
Hsp92II CATG 4 cut(s) 99, 115, 168, 437
Kzo9I GATC 2 cut(s) 28, 208
LmnI GCTCC 2 cut(s) 147, 630
Lsp1109I GCAGC 2 cut(s) 66, 230
LweI GCATC 1 cut(s) 262
MaeI CTAG 2 cut(s) 32, 634
MaeII ACGT 1 cut(s) 479
MaeIII GTNAC 3 cut(s) 480, 554, 613
MalI GATC 2 cut(s) 30, 210
MboI GATC 2 cut(s) 28, 208
MboII GAAGA 1 cut(s) 112
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 510
MlsI TGGCCA 1 cut(s) 443
MluNI TGGCCA 1 cut(s) 443
MlyI GAGTC 2 cut(s) 68, 254
MnlI CCTC 3 cut(s) 179, 223, 395
Mox20I TGGCCA 1 cut(s) 443
Mph1103I ATGCAT 2 cut(s) 19, 97
MscI TGGCCA 1 cut(s) 443
MseI TTAA 1 cut(s) 236
MslI CAYNNNNRTG 1 cut(s) 321
Msp20I TGGCCA 1 cut(s) 443
MspI CCGG 1 cut(s) 399
MspR9I CCNGG 3 cut(s) 200, 399, 586
MvaI CCWGG 2 cut(s) 200, 586
MwoI GCNNNNNNNGC 1 cut(s) 139
NciI CCSGG 1 cut(s) 399
NcoI CCATGG 1 cut(s) 164
NdeII GATC 2 cut(s) 28, 208
NlaIII CATG 4 cut(s) 99, 115, 168, 437
NlaIV GGNNCC 3 cut(s) 143, 509, 563
NmuCI GTSAC 2 cut(s) 554, 613
NsiI ATGCAT 2 cut(s) 19, 97
NspI RCATGY 1 cut(s) 115
PfeI GAWTC 1 cut(s) 347
PflMI CCANNNNNTGG 2 cut(s) 205, 439
PfoI TCCNGGA 1 cut(s) 198
PkrI GCNGC 3 cut(s) 53, 56, 220
PleI GAGTC 2 cut(s) 68, 254
PpsI GAGTC 2 cut(s) 68, 254
Psp1406I AACGTT 1 cut(s) 479
Psp6I CCWGG 2 cut(s) 198, 584
PspGI CCWGG 2 cut(s) 198, 584
PspN4I GGNNCC 3 cut(s) 143, 509, 563
PspPI GGNCC 1 cut(s) 246
PsuI RGATCY 1 cut(s) 28
RseI CAYNNNNRTG 1 cut(s) 321
SaqAI TTAA 1 cut(s) 236
SatI GCNGC 3 cut(s) 52, 55, 219
Sau3AI GATC 2 cut(s) 28, 208
Sau96I GGNCC 1 cut(s) 246
SchI GAGTC 2 cut(s) 68, 254
ScrFI CCNGG 3 cut(s) 200, 399, 586
SduI GDGCHC 1 cut(s) 510
SetI ASST 8 cut(s) 72, 190, 223, 379, 406, 482, 587, 635
SfaNI GCATC 1 cut(s) 262
SinI GGWCC 1 cut(s) 246
SmiMI CAYNNNNRTG 1 cut(s) 321
SsiI CCGC 2 cut(s) 51, 539
SspMI CTAG 2 cut(s) 32, 634
StyD4I CCNGG 3 cut(s) 198, 397, 584
StyI CCWWGG 1 cut(s) 164
TaaI ACNGT 3 cut(s) 61, 424, 486
TaiI ACGT 1 cut(s) 482
TaqI TCGA 1 cut(s) 350
TauI GCSGC 1 cut(s) 54
TfiI GAWTC 1 cut(s) 347
Tru1I TTAA 1 cut(s) 236
Tru9I TTAA 1 cut(s) 236
TscAI CASTG 3 cut(s) 349, 367, 563
TseFI GTSAC 2 cut(s) 554, 613
TseI GCWGC 2 cut(s) 54, 218
Tsp45I GTSAC 2 cut(s) 554, 613
TspDTI ATGAA 1 cut(s) 606
TspGWI ACGGA 1 cut(s) 102
TspRI CASTG 3 cut(s) 349, 367, 563
Van91I CCANNNNNTGG 2 cut(s) 205, 439
VpaK11BI GGWCC 1 cut(s) 246
XceI RCATGY 1 cut(s) 115
XspI CTAG 2 cut(s) 32, 634
Zsp2I ATGCAT 2 cut(s) 19, 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.