Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002416

Physical Location & Seq

Genomic Coordinates Reverse (-)

37672704 .. 37680349

Gene Structure 7646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1262000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGAAGCTGCTCACCTCCTCCTCCTTCTTGTTGTTTGTGATTACCAAGTAGTAGTACGTGCAAGAGGTGATGAGTCACCATCGTCGTGCGATTTCTTCAAAGGTAGATGGGTTCTGGACCAGTCCTACCCGCTCTACGATCCTTCCTCATGCCCCTTCATTGAGCGCGAGTTTAGCTGCCAAAAGAATGGCCGTCCCGATCAGATTCACACCAAATACAGATGGCAACCACTTGACTGTGATTTAGCAAGATTTGACGCACTTGACTTCTTCGAAAGATTTAGAGGGAAGAACATCATTTTCGTTGGAGATTCATTGAGCCGAAATCAATGGCAGTCCTTGACATGCATACTTCACTCTGCTGTACCAACTGCTAATTATAATGTGACAAGAGTAGACACTGTATCTATCTTCGAATTCACGGATTATGGAATTAGAGTGATGCTAGACAGTAATATGTATCTAGTAGATATTGTAAAAGAAAAGATTGGGAGGGTCTTGAAGCTTGATTCAATTGTGGGAGGCAACTTATGGAAGGATATTGACATGCTCATCTTTAACACTTGGCATTGGTGGAATCGCAGAGGGCCCTCTCAACCATGGGATTATGTTGAAGTAGGAGGCCAGACGAGCAAAGACATTGACCGCATGCTTGCTTTTCAGAAGGCGCTCGAGACTTGGGCTGGATGGGTGGATTCAAACATTGATCCAGCAAAGTCTAGGGTTTTCTTCCAAGGAATTTCTCCCTCTCATTACAATGGCAGTGAATGGCATGAACCAAGTGCAAAAAGTTGTGTCGGGCAGAAGGAGCCTTTGCTTGGGCCCTATCCAGGAGCTTCGCCACCAGCTTTGGGTGTGCTGAAGAATGTGTTAAGCACTATCAAAAAGCCAGTGACATTGCTCGATATAACAAACCTCTCGCTCCTGCGTAAAGATGGACATCCTTCAATTTATGGGTTGGGAGGCCGCACGGGAATGGATTGTACTCATTGGTGTCTCTGTGGAGTCCCAGATACTTGGAATGAGATTCTCTACAATTTTTTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

350

Amino Acids

39.82

Weight (kDa)

6.07

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	29 - 81	4.3e-23	PMR5 N terminal Domain
PC-Esterase	PF13839	82 - 346	2.2e-86	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14850 AT3G14850
fragaria_vesca	FvH4_3g17810 FvH4_3g17820 FvH4_3g17830
malus_domestica	MD03G1246700.v1.1 MD11G1262000.v1.1 MD11G1268700.v1.1 MD11G1268800.v1.1 MD11G1268900.v1.1
prunus_persica	Prupe.4G157200_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157500_v2.0.a1 Prupe.4G157600_v2.0.a1
pyrus_communis	pycom03g19570 pycom11g23100 pycom11g23770
rosa_chinensis	RchiOBHm_Chr5g0029591 RchiOBHm_Chr5g0029601 RchiOBHm_Chr5g0029611
rosa_laevigata	RLG00000033185 RLG00000033186 RLG00000033187
rosa_multiflora	Rmu_sc0001608.1_g000005 Rmu_sc0001608.1_g000006
rosa_roxburghii	Rroxscaffold_1G00050310 Rroxscaffold_1G00050320
rosa_samantha	Rh5AG207700 Rh5BG206200 Rh5BG206300 Rh5BG206400 Rh5CG228300 Rh5CG228400 Rh5CG228500 Rh5DG210000 Rh5DG210100
rosa_wichuraiana	Rw5G018880 Rw5G018890 Rw5G018900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	381
AccBSI	CCGCTC	1 cut(s)	133
AccI	GTMKAC	1 cut(s)	396
AccII	CGCG	1 cut(s)	168
AciI	CCGC	3 cut(s)	131, 646, 967
AclWI	GGATC	2 cut(s)	134, 701
AcoI	YGGCCR	1 cut(s)	190
AcsI	RAATTY	2 cut(s)	416, 738
AcuI	CTGAAG	1 cut(s)	881
AfaI	GTAC	3 cut(s)	57, 366, 985
AfiI	CCNNNNNNNGG	3 cut(s)	818, 830, 851
AgsI	TTSAA	6 cut(s)	100, 502, 513, 614, 699, 948
AjnI	CCWGG	1 cut(s)	829
AluBI	AGCT	5 cut(s)	8, 177, 505, 836, 848
AluI	AGCT	5 cut(s)	8, 177, 505, 836, 848
Alw26I	GTCTC	2 cut(s)	668, 1001
AlwI	GGATC	2 cut(s)	134, 701
Ama87I	CYCGRG	1 cut(s)	671
AoxI	GGCC	5 cut(s)	190, 587, 622, 821, 964
ApaI	GGGCCC	2 cut(s)	591, 825
ApeKI	GCWGC	2 cut(s)	8, 177
ApoI	RAATTY	2 cut(s)	416, 738
AspLEI	GCGC	2 cut(s)	168, 670
AspS9I	GGNCC	5 cut(s)	118, 587, 588, 821, 822
AsuHPI	GGTGA	3 cut(s)	5, 69, 80
AsuII	TTCGAA	2 cut(s)	273, 414
AvaI	CYCGRG	1 cut(s)	671
AvaII	GGWCC	1 cut(s)	118
BaeGI	GKGCMC	2 cut(s)	591, 825
BanII	GRGCYC	2 cut(s)	591, 825
BbvI	GCAGC	1 cut(s)	164
BccI	CCATC	5 cut(s)	88, 102, 216, 681, 929
BceAI	ACGGC	1 cut(s)	177
BciT130I	CCWGG	1 cut(s)	831
BcoDI	GTCTC	2 cut(s)	668, 1001
BfaI	CTAG	3 cut(s)	446, 464, 720
BfoI	RGCGCY	1 cut(s)	671
BisI	GCNGC	3 cut(s)	9, 178, 967
BlsI	GCNGC	3 cut(s)	10, 179, 968
Bme1390I	CCNGG	1 cut(s)	831
Bme18I	GGWCC	1 cut(s)	118
BmeT110I	CYCGRG	1 cut(s)	671
BmgT120I	GGNCC	5 cut(s)	118, 587, 588, 821, 822
BmiI	GGNNCC	3 cut(s)	589, 810, 823
BmrFI	CCNGG	1 cut(s)	831
BmsI	GCATC	1 cut(s)	432
Bpu14I	TTCGAA	2 cut(s)	273, 414
BsaAI	YACGTR	1 cut(s)	59
BsaBI	GATNNNNATC	1 cut(s)	939
BsaJI	CCNNGG	2 cut(s)	599, 733
Bsc4I	CCNNNNNNNGG	3 cut(s)	818, 830, 851
Bse1I	ACTGG	2 cut(s)	121, 890
Bse3DI	GCAATG	1 cut(s)	896
Bse8I	GATNNNNATC	1 cut(s)	939
BseBI	CCWGG	1 cut(s)	831
BseDI	CCNNGG	2 cut(s)	599, 733
BseGI	GGATG	2 cut(s)	692, 940
BseJI	GATNNNNATC	1 cut(s)	939
BseLI	CCNNNNNNNGG	3 cut(s)	818, 830, 851
BseMI	GCAATG	1 cut(s)	896
BseNI	ACTGG	2 cut(s)	121, 890
BseRI	GAGGAG	2 cut(s)	8, 11
BseSI	GKGCMC	2 cut(s)	591, 825
BseXI	GCAGC	1 cut(s)	164
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	5 cut(s)	192, 589, 624, 823, 966
BsiHKCI	CYCGRG	1 cut(s)	671
BslFI	GGGAC	2 cut(s)	180, 992
BslI	CCNNNNNNNGG	3 cut(s)	818, 830, 851
BsmAI	GTCTC	2 cut(s)	668, 1001
BsmFI	GGGAC	2 cut(s)	180, 992
BsnI	GGCC	5 cut(s)	192, 589, 624, 823, 966
BsoBI	CYCGRG	1 cut(s)	671
Bsp119I	TTCGAA	2 cut(s)	273, 414
Bsp120I	GGGCCC	2 cut(s)	587, 821
Bsp1286I	GDGCHC	2 cut(s)	591, 825
Bsp143I	GATC	3 cut(s)	139, 199, 706
Bsp19I	CCATGG	1 cut(s)	599
BspACI	CCGC	3 cut(s)	131, 646, 967
BspANI	GGCC	5 cut(s)	192, 589, 624, 823, 966
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	3 cut(s)	589, 810, 823
BspPI	GGATC	2 cut(s)	134, 701
BspT104I	TTCGAA	2 cut(s)	273, 414
BsrBI	CCGCTC	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	896
BsrI	ACTGG	2 cut(s)	121, 890
BssECI	CCNNGG	2 cut(s)	599, 733
BssMI	GATC	3 cut(s)	139, 199, 706
BssT1I	CCWWGG	2 cut(s)	599, 733
Bst2UI	CCWGG	1 cut(s)	831
Bst4CI	ACNGT	3 cut(s)	239, 403, 452
BstBAI	YACGTR	1 cut(s)	59
BstBI	TTCGAA	2 cut(s)	273, 414
BstC8I	GCNNGC	2 cut(s)	650, 654
BstDSI	CCRYGG	1 cut(s)	599
BstF5I	GGATG	2 cut(s)	692, 940
BstFNI	CGCG	1 cut(s)	168
BstH2I	RGCGCY	1 cut(s)	671
BstHHI	GCGC	2 cut(s)	168, 670
BstKTI	GATC	3 cut(s)	142, 202, 709
BstMAI	GTCTC	2 cut(s)	668, 1001
BstMBI	GATC	3 cut(s)	139, 199, 706
BstMWI	GCNNNNNNNGC	3 cut(s)	174, 630, 808
BstNI	CCWGG	1 cut(s)	831
BstNSI	RCATGY	3 cut(s)	348, 550, 652
BstSCI	CCNGG	1 cut(s)	829
BstSLI	GKGCMC	2 cut(s)	591, 825
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	164
BstXI	CCANNNNNNTGG	2 cut(s)	188, 1017
BsuRI	GGCC	5 cut(s)	192, 589, 624, 823, 966
BtgI	CCRYGG	1 cut(s)	599
BtsCI	GGATG	2 cut(s)	692, 940
BtsI	GCAGTG	1 cut(s)	769
BtsIMutI	CAGTG	3 cut(s)	399, 769, 897
Cac8I	GCNNGC	2 cut(s)	650, 654
CfoI	GCGC	2 cut(s)	168, 670
Cfr13I	GGNCC	5 cut(s)	118, 587, 588, 821, 822
CseI	GACGC	1 cut(s)	266
Csp6I	GTAC	3 cut(s)	56, 365, 984
CspCI	CAANNNNNGTGG	2 cut(s)	831, 866
CviAII	CATG	6 cut(s)	150, 345, 547, 600, 649, 773
CviQI	GTAC	3 cut(s)	56, 365, 984
DpnI	GATC	3 cut(s)	141, 201, 708
DpnII	GATC	3 cut(s)	139, 199, 706
EaeI	YGGCCR	1 cut(s)	190
Eco130I	CCWWGG	2 cut(s)	599, 733
Eco24I	GRGCYC	2 cut(s)	591, 825
Eco47I	GGWCC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	881
Eco88I	CYCGRG	1 cut(s)	671
EcoO109I	RGGNCCY	3 cut(s)	587, 588, 822
EcoRI	GAATTC	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	829
EcoT14I	CCWWGG	2 cut(s)	599, 733
EcoT22I	ATGCAT	1 cut(s)	350
EcoT38I	GRGCYC	2 cut(s)	591, 825
ErhI	CCWWGG	2 cut(s)	599, 733
FaeI	CATG	6 cut(s)	153, 348, 550, 603, 652, 776
FaqI	GGGAC	2 cut(s)	180, 992
FatI	CATG	6 cut(s)	149, 344, 546, 599, 648, 772
FauI	CCCGC	1 cut(s)	138
FblI	GTMKAC	1 cut(s)	396
Fnu4HI	GCNGC	3 cut(s)	9, 178, 967
FokI	GGATG	2 cut(s)	699, 927
FriOI	GRGCYC	2 cut(s)	591, 825
Fsp4HI	GCNGC	3 cut(s)	9, 178, 967
FspBI	CTAG	3 cut(s)	446, 464, 720
GlaI	GCGC	2 cut(s)	167, 669
GluI	GCNGC	3 cut(s)	9, 178, 967
HaeII	RGCGCY	1 cut(s)	671
HaeIII	GGCC	5 cut(s)	192, 589, 624, 823, 966
HgaI	GACGC	1 cut(s)	266
HhaI	GCGC	2 cut(s)	168, 670
Hin1II	CATG	6 cut(s)	153, 348, 550, 603, 652, 776
Hin6I	GCGC	2 cut(s)	166, 668
HinP1I	GCGC	2 cut(s)	166, 668
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	8 cut(s)	74, 205, 311, 509, 577, 695, 1005, 1027
HphI	GGTGA	3 cut(s)	5, 69, 80
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	2 cut(s)	204, 663
Hpy188III	TCNNGA	4 cut(s)	116, 197, 499, 673
Hpy8I	GTNNAC	1 cut(s)	397
Hpy99I	CGWCG	1 cut(s)	88
HpyAV	CCTTC	7 cut(s)	35, 153, 166, 529, 658, 799, 954
HpyCH4III	ACNGT	3 cut(s)	239, 403, 452
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	3 cut(s)	62, 348, 785
HpyF10VI	GCNNNNNNNGC	3 cut(s)	174, 630, 808
HpySE526I	ACGT	1 cut(s)	58
Hsp92II	CATG	6 cut(s)	153, 348, 550, 603, 652, 776
HspAI	GCGC	2 cut(s)	166, 668
Kzo9I	GATC	3 cut(s)	139, 199, 706
LmnI	GCTCC	3 cut(s)	808, 833, 927
Lsp1109I	GCAGC	1 cut(s)	164
LweI	GCATC	1 cut(s)	432
MaeI	CTAG	3 cut(s)	446, 464, 720
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	3 cut(s)	75, 385, 892
MalI	GATC	3 cut(s)	141, 201, 708
MbiI	CCGCTC	1 cut(s)	133
MboI	GATC	3 cut(s)	139, 199, 706
MboII	GAAGA	6 cut(s)	88, 262, 301, 403, 721, 874
MfeI	CAATTG	1 cut(s)	513
MhlI	GDGCHC	2 cut(s)	591, 825
MluCI	AATT	7 cut(s)	376, 416, 432, 513, 738, 948, 1036
MlyI	GAGTC	2 cut(s)	83, 1014
MmeI	TCCRAC	1 cut(s)	286
Mph1103I	ATGCAT	1 cut(s)	350
MseI	TTAA	2 cut(s)	558, 872
MslI	CAYNNNNRTG	3 cut(s)	85, 756, 974
MspR9I	CCNGG	1 cut(s)	831
MunI	CAATTG	1 cut(s)	513
MvaI	CCWGG	1 cut(s)	831
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	3 cut(s)	174, 630, 808
NcoI	CCATGG	1 cut(s)	599
NdeII	GATC	3 cut(s)	139, 199, 706
NlaIII	CATG	6 cut(s)	153, 348, 550, 603, 652, 776
NlaIV	GGNNCC	3 cut(s)	589, 810, 823
NmuCI	GTSAC	3 cut(s)	75, 385, 892
NsiI	ATGCAT	1 cut(s)	350
NspI	RCATGY	3 cut(s)	348, 550, 652
NspV	TTCGAA	2 cut(s)	273, 414
PaeI	GCATGC	1 cut(s)	652
PaeR7I	CTCGAG	1 cut(s)	671
PfeI	GAWTC	6 cut(s)	205, 311, 509, 577, 695, 1027
PfoI	TCCNGGA	1 cut(s)	829
PkrI	GCNGC	3 cut(s)	10, 179, 968
PleI	GAGTC	2 cut(s)	82, 1013
PpsI	GAGTC	2 cut(s)	82, 1013
Ppu21I	YACGTR	1 cut(s)	59
PsiI	TTATAA	1 cut(s)	381
Psp6I	CCWGG	1 cut(s)	829
PspGI	CCWGG	1 cut(s)	829
PspN4I	GGNNCC	3 cut(s)	589, 810, 823
PspOMI	GGGCCC	2 cut(s)	587, 821
PspPI	GGNCC	5 cut(s)	118, 587, 588, 821, 822
RsaI	GTAC	3 cut(s)	57, 366, 985
RsaNI	GTAC	3 cut(s)	56, 365, 984
RseI	CAYNNNNRTG	3 cut(s)	85, 756, 974
SaqAI	TTAA	2 cut(s)	558, 872
SatI	GCNGC	3 cut(s)	9, 178, 967
Sau3AI	GATC	3 cut(s)	139, 199, 706
Sau96I	GGNCC	5 cut(s)	118, 587, 588, 821, 822
SchI	GAGTC	2 cut(s)	83, 1014
ScrFI	CCNGG	1 cut(s)	831
SduI	GDGCHC	2 cut(s)	591, 825
SfaNI	GCATC	1 cut(s)	432
Sfr274I	CTCGAG	1 cut(s)	671
SfuI	TTCGAA	2 cut(s)	273, 414
SinI	GGWCC	1 cut(s)	118
SlaI	CTCGAG	1 cut(s)	671
SmiMI	CAYNNNNRTG	3 cut(s)	85, 756, 974
SmlI	CTYRAG	1 cut(s)	671
SmoI	CTYRAG	1 cut(s)	671
SphI	GCATGC	1 cut(s)	652
Sse9I	AATT	7 cut(s)	376, 416, 432, 513, 738, 948, 1036
SsiI	CCGC	3 cut(s)	131, 646, 967
SspMI	CTAG	3 cut(s)	446, 464, 720
StyD4I	CCNGG	1 cut(s)	829
StyI	CCWWGG	2 cut(s)	599, 733
TaaI	ACNGT	3 cut(s)	239, 403, 452
TaiI	ACGT	1 cut(s)	61
TaqI	TCGA	4 cut(s)	273, 414, 672, 903
TasI	AATT	7 cut(s)	376, 416, 432, 513, 738, 948, 1036
TatI	WGTACW	1 cut(s)	983
TauI	GCSGC	1 cut(s)	969
TfiI	GAWTC	6 cut(s)	205, 311, 509, 577, 695, 1027
Tru1I	TTAA	2 cut(s)	558, 872
Tru9I	TTAA	2 cut(s)	558, 872
TscAI	CASTG	3 cut(s)	406, 769, 897
TseFI	GTSAC	3 cut(s)	75, 385, 892
TseI	GCWGC	2 cut(s)	8, 177
Tsp45I	GTSAC	3 cut(s)	75, 385, 892
TspDTI	ATGAA	3 cut(s)	148, 303, 789
TspGWI	ACGGA	1 cut(s)	437
TspRI	CASTG	3 cut(s)	406, 769, 897
VpaK11BI	GGWCC	1 cut(s)	118
XapI	RAATTY	2 cut(s)	416, 738
XceI	RCATGY	3 cut(s)	348, 550, 652
XhoI	CTCGAG	1 cut(s)	671
XmiI	GTMKAC	1 cut(s)	396
XspI	CTAG	3 cut(s)	446, 464, 720
Zsp2I	ATGCAT	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.