Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002416

Physical Location & Seq

Genomic Coordinates Reverse (-)

9012392 .. 9016371

Gene Structure 3980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G157400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGGGAAAATGTTGCATGGCTTTGGCTTAGTTGCTTATGCTCTTCTGCTAGTTCTATGCCTTCATGAAGACCAATTACATTGCTATGCAAAAGTACTTGCGACCAGCTGTGACTTGTTTCATGGGAGTTGGGTTCTTGATAAAAGCTATCCACTCTACGACACCTCCAGCTGCCCTTTCATTGAGAAAGAGTTTGACTGCCAAAACAATGGACGGCCAGACGATCGGTATCTCAAATATAGATGGAAGCCTGACGCTTGTGCATTGCCAAGATTCAATGGTCGGGACCTGTTGAAGAGGTTAAAGGGGAAGAAGATACTATTCGTAGGGGACTCTCTAAGCCTCAACCAATGGCAATCACTAACATGCATGTTGCATGCTGCAGTGCCCCAACCCAACTATGCCTTAACAAGGAAAGCCGACATCTCTGCGTTTTCTTGGCCCGATTATGATGTTTCAATTATGTTATCTCGCAATGCATTTCTGGTGGACCTAGTGGATACAAAGGAAGGCAGGGTTCTAAAGCTGGACTCTATTGAAAACGGCAACACATGGAAAGGATACGATATGCTTATCTTCAATACTTGGCATTGGTGGCTCCACAAAGGAAGCAAACAACCATGGGACTACATAGAAGTAAGAGGTAAGATAGTGAAGGATATGGATCGTTTGGATGCTTTTAAAGAGGGATTAACTACTTGGTCTAAGTGGGTGGACTCTAATGTTGATGCTGCCAACACCAAAGTTTTCTTTCAAGGCATTTCTCCAACCCATTACATAGGAAAAGAATGGGACGAGTCAGAGTCAGCAACTTGCAAAGGACAAAATCAACCCGTAAGTGGTTCAAAATACCCAGGAGGATCACCAGCAGCAGCAACTGTGGTCAACCAAGTGTTGACCGCCATGTCATCCCCAGTAACTTTGCTGGACATAACATTGCTATCGGAACTGAGGAAAGATGGGCACCCATCTGCATATGGTTTGGGTGGGGATAAAGGAAACGATTGCAGTCACTGGTGCCTTGCTGGTGTCCCTGACACCTGGAATGAGCTTTTTTATGCCAGTCTTGTGGCTACTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

361

Amino Acids

40.47

Weight (kDa)

6.36

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14850 AT3G14850
fragaria_vesca	FvH4_3g17810 FvH4_3g17820 FvH4_3g17830
malus_domestica	MD03G1246700.v1.1 MD11G1262000.v1.1 MD11G1268700.v1.1 MD11G1268800.v1.1 MD11G1268900.v1.1
prunus_persica	Prupe.4G157200_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157500_v2.0.a1 Prupe.4G157600_v2.0.a1
pyrus_communis	pycom03g19570 pycom11g23100 pycom11g23770
rosa_chinensis	RchiOBHm_Chr5g0029591 RchiOBHm_Chr5g0029601 RchiOBHm_Chr5g0029611
rosa_laevigata	RLG00000033185 RLG00000033186 RLG00000033187
rosa_multiflora	Rmu_sc0001608.1_g000005 Rmu_sc0001608.1_g000006
rosa_roxburghii	Rroxscaffold_1G00050310 Rroxscaffold_1G00050320
rosa_samantha	Rh5AG207700 Rh5BG206200 Rh5BG206300 Rh5BG206400 Rh5CG228300 Rh5CG228400 Rh5CG228500 Rh5DG210000 Rh5DG210100
rosa_wichuraiana	Rw5G018880 Rw5G018890 Rw5G018900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	904
AccB1I	GGYRCC	2 cut(s)	963, 1017
AciI	CCGC	1 cut(s)	900
AclWI	GGATC	2 cut(s)	672, 868
AcoI	YGGCCR	1 cut(s)	215
AfaI	GTAC	1 cut(s)	96
AfiI	CCNNNNNNNGG	2 cut(s)	411, 839
AgsI	TTSAA	7 cut(s)	277, 295, 459, 539, 580, 755, 846
AjnI	CCWGG	2 cut(s)	853, 1040
AluBI	AGCT	5 cut(s)	108, 147, 171, 526, 1051
AluI	AGCT	5 cut(s)	108, 147, 171, 526, 1051
AlwI	GGATC	2 cut(s)	672, 868
AlwNI	CAGNNNCTG	2 cut(s)	878, 1014
AoxI	GGCC	2 cut(s)	215, 440
ApeKI	GCWGC	5 cut(s)	171, 380, 731, 869, 872
AspS9I	GGNCC	3 cut(s)	286, 441, 490
AsuHPI	GGTGA	1 cut(s)	855
AvaII	GGWCC	2 cut(s)	286, 490
BaeGI	GKGCMC	2 cut(s)	390, 966
BanI	GGYRCC	2 cut(s)	963, 1017
BarI	GAAGNNNNNNTAC	2 cut(s)	60, 92
BbsI	GAAGAC	1 cut(s)	75
BbvI	GCAGC	5 cut(s)	158, 367, 718, 881, 884
BccI	CCATC	3 cut(s)	237, 953, 976
BceAI	ACGGC	2 cut(s)	230, 559
BcgI	CGANNNNNNTGC	2 cut(s)	410, 444
BciT130I	CCWGG	2 cut(s)	855, 1042
BciVI	GTATCC	2 cut(s)	493, 554
BfaI	CTAG	2 cut(s)	50, 494
BfmI	CTRYAG	1 cut(s)	381
BfuI	GTATCC	2 cut(s)	493, 554
BisI	GCNGC	5 cut(s)	172, 381, 732, 870, 873
BlsI	GCNGC	5 cut(s)	173, 382, 733, 871, 874
BmcAI	AGTACT	1 cut(s)	96
Bme1390I	CCNGG	2 cut(s)	855, 1042
Bme18I	GGWCC	2 cut(s)	286, 490
BmgT120I	GGNCC	3 cut(s)	286, 441, 490
BmiI	GGNNCC	4 cut(s)	287, 599, 965, 1019
BmrFI	CCNGG	2 cut(s)	855, 1042
BmrI	ACTGGG	1 cut(s)	908
BmsI	GCATC	2 cut(s)	664, 718
BmuI	ACTGGG	1 cut(s)	908
BpiI	GAAGAC	1 cut(s)	75
BpmI	CTGGAG	1 cut(s)	151
BsaBI	GATNNNNATC	2 cut(s)	228, 663
BsaJI	CCNNGG	2 cut(s)	620, 853
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	2 cut(s)	411, 839
Bse1I	ACTGG	4 cut(s)	914, 1019, 1062, 1081
Bse3DI	GCAATG	4 cut(s)	79, 263, 481, 935
Bse8I	GATNNNNATC	2 cut(s)	228, 663
BseBI	CCWGG	2 cut(s)	855, 1042
BseDI	CCNNGG	2 cut(s)	620, 853
BseGI	GGATG	2 cut(s)	679, 908
BseJI	GATNNNNATC	2 cut(s)	228, 663
BseLI	CCNNNNNNNGG	2 cut(s)	411, 839
BseMI	GCAATG	4 cut(s)	79, 263, 481, 935
BseMII	CTCAG	1 cut(s)	941
BseNI	ACTGG	4 cut(s)	914, 1019, 1062, 1081
BseSI	GKGCMC	2 cut(s)	390, 966
BseXI	GCAGC	5 cut(s)	158, 367, 718, 881, 884
Bsh1285I	CGRYCG	1 cut(s)	226
BshFI	GGCC	2 cut(s)	217, 442
BshNI	GGYRCC	2 cut(s)	963, 1017
BsiEI	CGRYCG	1 cut(s)	226
BslFI	GGGAC	5 cut(s)	299, 344, 638, 806, 1016
BslI	CCNNNNNNNGG	2 cut(s)	411, 839
BsmFI	GGGAC	5 cut(s)	299, 344, 638, 806, 1016
BsnI	GGCC	2 cut(s)	217, 442
Bsp1286I	GDGCHC	2 cut(s)	390, 966
Bsp143I	GATC	3 cut(s)	223, 664, 860
Bsp19I	CCATGG	1 cut(s)	620
BspACI	CCGC	1 cut(s)	900
BspANI	GGCC	2 cut(s)	217, 442
BspCNI	CTCAG	1 cut(s)	942
BspHI	TCATGA	1 cut(s)	64
BspLI	GGNNCC	4 cut(s)	287, 599, 965, 1019
BspMAI	CTGCAG	1 cut(s)	385
BspPI	GGATC	2 cut(s)	672, 868
BspQI	GCTCTTC	1 cut(s)	48
BspT107I	GGYRCC	2 cut(s)	963, 1017
BsrDI	GCAATG	4 cut(s)	79, 263, 481, 935
BsrI	ACTGG	4 cut(s)	914, 1019, 1062, 1081
BssECI	CCNNGG	2 cut(s)	620, 853
BssMI	GATC	3 cut(s)	223, 664, 860
BssT1I	CCWWGG	1 cut(s)	620
Bst2UI	CCWGG	2 cut(s)	855, 1042
Bst4CI	ACNGT	1 cut(s)	880
Bst6I	CTCTTC	2 cut(s)	48, 290
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	4 cut(s)	28, 338, 705, 950
BstDSI	CCRYGG	1 cut(s)	620
BstENI	CCTNNNNNAGG	1 cut(s)	409
BstF5I	GGATG	2 cut(s)	679, 908
BstKTI	GATC	3 cut(s)	226, 667, 863
BstMBI	GATC	3 cut(s)	223, 664, 860
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	1 cut(s)	595
BstNI	CCWGG	2 cut(s)	855, 1042
BstNSI	RCATGY	3 cut(s)	369, 373, 380
BstSCI	CCNGG	2 cut(s)	853, 1040
BstSFI	CTRYAG	1 cut(s)	381
BstSLI	GKGCMC	2 cut(s)	390, 966
BstV1I	GCAGC	5 cut(s)	158, 367, 718, 881, 884
BstV2I	GAAGAC	1 cut(s)	75
BstXI	CCANNNNNNTGG	2 cut(s)	209, 1069
BsuI	GTATCC	2 cut(s)	493, 554
BsuRI	GGCC	2 cut(s)	217, 442
BtgI	CCRYGG	1 cut(s)	620
BtsCI	GGATG	2 cut(s)	679, 908
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	2 cut(s)	390, 1012
Cac8I	GCNNGC	1 cut(s)	378
CaiI	CAGNNNCTG	2 cut(s)	878, 1014
CciI	TCATGA	1 cut(s)	64
Cfr13I	GGNCC	3 cut(s)	286, 441, 490
CseI	GACGC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	95
CviAII	CATG	9 cut(s)	17, 65, 122, 366, 370, 377, 552, 621, 904
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	4 cut(s)	28, 338, 705, 950
DpnI	GATC	3 cut(s)	225, 666, 862
DpnII	GATC	3 cut(s)	223, 664, 860
DraI	TTTAAA	1 cut(s)	682
DrdI	GACNNNNNNGTC	1 cut(s)	904
DseDI	GACNNNNNNGTC	1 cut(s)	904
EaeI	YGGCCR	1 cut(s)	215
Eam1104I	CTCTTC	2 cut(s)	48, 290
EarI	CTCTTC	2 cut(s)	48, 290
Eco130I	CCWWGG	1 cut(s)	620
Eco47I	GGWCC	2 cut(s)	286, 490
EcoNI	CCTNNNNNAGG	1 cut(s)	409
EcoO109I	RGGNCCY	1 cut(s)	286
EcoRII	CCWGG	2 cut(s)	853, 1040
EcoT14I	CCWWGG	1 cut(s)	620
EcoT22I	ATGCAT	2 cut(s)	371, 481
ErhI	CCWWGG	1 cut(s)	620
FaeI	CATG	9 cut(s)	20, 68, 125, 369, 373, 380, 555, 624, 907
FaqI	GGGAC	5 cut(s)	299, 344, 638, 806, 1016
FatI	CATG	9 cut(s)	16, 64, 121, 365, 369, 376, 551, 620, 903
FauNDI	CATATG	1 cut(s)	976
Fnu4HI	GCNGC	5 cut(s)	172, 381, 732, 870, 873
FokI	GGATG	2 cut(s)	686, 895
Fsp4HI	GCNGC	5 cut(s)	172, 381, 732, 870, 873
FspBI	CTAG	2 cut(s)	50, 494
GluI	GCNGC	5 cut(s)	172, 381, 732, 870, 873
GsuI	CTGGAG	1 cut(s)	151
HaeIII	GGCC	2 cut(s)	217, 442
HgaI	GACGC	1 cut(s)	263
Hin1II	CATG	9 cut(s)	20, 68, 125, 369, 373, 380, 555, 624, 907
HincII	GTYRAC	2 cut(s)	886, 897
HindII	GTYRAC	2 cut(s)	886, 897
HinfI	GANTC	6 cut(s)	273, 332, 530, 716, 797, 803
HphI	GGTGA	1 cut(s)	855
Hpy166II	GTNNAC	4 cut(s)	490, 715, 886, 897
Hpy188I	TCNGA	2 cut(s)	802, 946
Hpy188III	TCNNGA	3 cut(s)	65, 137, 284
Hpy8I	GTNNAC	4 cut(s)	490, 715, 886, 897
HpyAV	CCTTC	3 cut(s)	71, 503, 649
HpyCH4III	ACNGT	1 cut(s)	880
HpyF10VI	GCNNNNNNNGC	1 cut(s)	595
HpyF3I	CTNAG	4 cut(s)	28, 338, 705, 950
Hsp92II	CATG	9 cut(s)	20, 68, 125, 369, 373, 380, 555, 624, 907
Kzo9I	GATC	3 cut(s)	223, 664, 860
LguI	GCTCTTC	1 cut(s)	48
LmnI	GCTCC	1 cut(s)	603
Lsp1109I	GCAGC	5 cut(s)	158, 367, 718, 881, 884
LweI	GCATC	2 cut(s)	664, 718
MaeI	CTAG	2 cut(s)	50, 494
MaeIII	GTNAC	3 cut(s)	110, 916, 1010
MalI	GATC	3 cut(s)	225, 666, 862
MboI	GATC	3 cut(s)	223, 664, 860
MboII	GAAGA	6 cut(s)	35, 80, 307, 322, 325, 568
MhlI	GDGCHC	2 cut(s)	390, 966
MluCI	AATT	2 cut(s)	74, 459
MlyI	GAGTC	5 cut(s)	326, 524, 710, 806, 812
MmeI	TCCRAC	1 cut(s)	791
MnlI	CCTC	7 cut(s)	175, 291, 353, 635, 679, 851, 945
Mph1103I	ATGCAT	2 cut(s)	371, 481
MseI	TTAA	4 cut(s)	302, 407, 681, 692
MslI	CAYNNNNRTG	2 cut(s)	84, 364
MspA1I	CMGCKG	2 cut(s)	108, 171
MspR9I	CCNGG	2 cut(s)	855, 1042
MvaI	CCWGG	2 cut(s)	855, 1042
MwoI	GCNNNNNNNGC	1 cut(s)	595
NcoI	CCATGG	1 cut(s)	620
NdeI	CATATG	1 cut(s)	976
NdeII	GATC	3 cut(s)	223, 664, 860
NlaIII	CATG	9 cut(s)	20, 68, 125, 369, 373, 380, 555, 624, 907
NlaIV	GGNNCC	4 cut(s)	287, 599, 965, 1019
NmuCI	GTSAC	2 cut(s)	110, 1010
NsiI	ATGCAT	2 cut(s)	371, 481
NspI	RCATGY	3 cut(s)	369, 373, 380
PaeI	GCATGC	1 cut(s)	380
PagI	TCATGA	1 cut(s)	64
PciSI	GCTCTTC	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	273
PkrI	GCNGC	5 cut(s)	173, 382, 733, 871, 874
Ple19I	CGATCG	1 cut(s)	226
PleI	GAGTC	5 cut(s)	326, 524, 710, 805, 811
PpsI	GAGTC	5 cut(s)	326, 524, 710, 805, 811
PpuMI	RGGWCCY	1 cut(s)	286
Psp5II	RGGWCCY	1 cut(s)	286
Psp6I	CCWGG	2 cut(s)	853, 1040
PspGI	CCWGG	2 cut(s)	853, 1040
PspN4I	GGNNCC	4 cut(s)	287, 599, 965, 1019
PspPI	GGNCC	3 cut(s)	286, 441, 490
PspPPI	RGGWCCY	1 cut(s)	286
PstI	CTGCAG	1 cut(s)	385
PstNI	CAGNNNCTG	2 cut(s)	878, 1014
PvuI	CGATCG	1 cut(s)	226
PvuII	CAGCTG	2 cut(s)	108, 171
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
RseI	CAYNNNNRTG	2 cut(s)	84, 364
SapI	GCTCTTC	1 cut(s)	48
SaqAI	TTAA	4 cut(s)	302, 407, 681, 692
SatI	GCNGC	5 cut(s)	172, 381, 732, 870, 873
Sau3AI	GATC	3 cut(s)	223, 664, 860
Sau96I	GGNCC	3 cut(s)	286, 441, 490
ScaI	AGTACT	1 cut(s)	96
SchI	GAGTC	5 cut(s)	326, 524, 710, 806, 812
ScrFI	CCNGG	2 cut(s)	855, 1042
SduI	GDGCHC	2 cut(s)	390, 966
SfaNI	GCATC	2 cut(s)	664, 718
SfcI	CTRYAG	1 cut(s)	381
SinI	GGWCC	2 cut(s)	286, 490
SmiMI	CAYNNNNRTG	2 cut(s)	84, 364
SphI	GCATGC	1 cut(s)	380
Sse9I	AATT	2 cut(s)	74, 459
SsiI	CCGC	1 cut(s)	900
SspMI	CTAG	2 cut(s)	50, 494
StyD4I	CCNGG	2 cut(s)	853, 1040
StyI	CCWWGG	1 cut(s)	620
TaaI	ACNGT	1 cut(s)	880
TasI	AATT	2 cut(s)	74, 459
TatI	WGTACW	1 cut(s)	94
TfiI	GAWTC	1 cut(s)	273
Tru1I	TTAA	4 cut(s)	302, 407, 681, 692
Tru9I	TTAA	4 cut(s)	302, 407, 681, 692
TscAI	CASTG	2 cut(s)	390, 1019
TseFI	GTSAC	2 cut(s)	110, 1010
TseI	GCWGC	5 cut(s)	171, 380, 731, 869, 872
Tsp45I	GTSAC	2 cut(s)	110, 1010
TspDTI	ATGAA	4 cut(s)	53, 81, 110, 169
TspRI	CASTG	2 cut(s)	390, 1019
VpaK11BI	GGWCC	2 cut(s)	286, 490
XagI	CCTNNNNNAGG	1 cut(s)	409
XceI	RCATGY	3 cut(s)	369, 373, 380
XspI	CTAG	2 cut(s)	50, 494
ZrmI	AGTACT	1 cut(s)	96
Zsp2I	ATGCAT	2 cut(s)	371, 481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.