Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002416

Physical Location & Seq

Genomic Coordinates Forward (+)

38475008 .. 38480408

Gene Structure 5401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1268700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGGTTTCTGGGTTCATAGTAGTTTTTGCGCTAGGAGTGCAGCTGTTCTCCTCCTCCTTGTTGTTTGTGATTACCAAGCGGTTGTATTAGCAAATGGTGCAAGAAGTGATGAATCAATATCATCGTCATCGTCGTGTGATTTCTTCAAAGGGAGATGGGTTTTGGACCAGTCCTACCCCCTCTACAATCCTTCCTCATGCCCCTTCATTGAGAACGAGTTTACCTGCCAAAAGAATGGCCGTCCCGACCAGATATACACCAAATACAGATGGCAACCACATGACTGTGATTTAGCAAGATTTGACGCGCTTGACTTCTTCGAAAGATTTAGAGGGAAGAGCATCATGTTCGTTGGAGATTCATTGAGCCGAAATCAATGGCAGTCCTTGACATGCATGCTTCACTCAAATGTACCAACTGCTAAGTATAATGTGACAAGAGTAAACGATGTATCTATCTTCGAATTCATGGATTATGAAGTTAAAGTGATGCTAGACCGCAATGTATATCTAGTAGATATTGTAAGAGAAAATATTGGGAGGGTCTTGAAGCTTGATTCAATTGTGGGAGGCAAGTTATGGAAGGATATTGATATGCTCATCTTCAACACTTGGCATTGGTGGAATCGTAGAGGACCCTCGCAACCATGGGATTATGTTGAAGTAGGAGGTCAGAGGAGCAAAGACATTGACCGCATGCTTGCTTTTCAGAAGGCACTCGTGACTTGGGCTGCATGGGTGGACTTAAACATTGATCCAGCGAAGTCTAGGGTTTTCTTCCAAGGAATTTCTCCCTCTCATTACAATGGCAGTGAATGGCATGAACCATGGGCAAGAAATTGTGTAGGGCAGAAGGAGCCTTTGCTTGGGTCGATCTATCCAGGAGCTTTGCCACCAGCTCTGGGTGTGCTGAAGAATGTGTTAAGCACAATAAAAAAGCCCGTGACATTGCTAGATATAACAAACCTCTCACTCCTGCGCAAGGATGGACATCCTTCAACTTATGGGTTGGCAGGCCGCACAGGAATGGATTGTAGTCATTGGTGTCTTTGTGGAGTACCAGACACTTGGAATGAGATTCTCTACAATTTTATTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

367

Amino Acids

41.91

Weight (kDa)

7.05

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	45 - 97	1.1e-24	PMR5 N terminal Domain
PC-Esterase	PF13839	98 - 363	5.3e-88	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14850 AT3G14850
fragaria_vesca	FvH4_3g17810 FvH4_3g17820 FvH4_3g17830
malus_domestica	MD03G1246700.v1.1 MD11G1262000.v1.1 MD11G1268700.v1.1 MD11G1268800.v1.1 MD11G1268900.v1.1
prunus_persica	Prupe.4G157200_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157500_v2.0.a1 Prupe.4G157600_v2.0.a1
pyrus_communis	pycom03g19570 pycom11g23100 pycom11g23770
rosa_chinensis	RchiOBHm_Chr5g0029591 RchiOBHm_Chr5g0029601 RchiOBHm_Chr5g0029611
rosa_laevigata	RLG00000033185 RLG00000033186 RLG00000033187
rosa_multiflora	Rmu_sc0001608.1_g000005 Rmu_sc0001608.1_g000006
rosa_roxburghii	Rroxscaffold_1G00050310 Rroxscaffold_1G00050320
rosa_samantha	Rh5AG207700 Rh5BG206200 Rh5BG206300 Rh5BG206400 Rh5CG228300 Rh5CG228400 Rh5CG228500 Rh5DG210000 Rh5DG210100
rosa_wichuraiana	Rw5G018880 Rw5G018890 Rw5G018900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	980
Acc36I	ACCTGC	1 cut(s)	233
AccII	CGCG	1 cut(s)	308
AciI	CCGC	4 cut(s)	80, 499, 694, 1018
AclWI	GGATC	1 cut(s)	749
AcoI	YGGCCR	1 cut(s)	238
AcsI	RAATTY	2 cut(s)	464, 786
AcuI	CTGAAG	1 cut(s)	932
AfaI	GTAC	2 cut(s)	414, 1059
AfiI	CCNNNNNNNGG	3 cut(s)	866, 902, 982
AgsI	TTSAA	6 cut(s)	148, 550, 561, 607, 662, 999
AjnI	CCWGG	1 cut(s)	880
AluBI	AGCT	4 cut(s)	44, 553, 887, 899
AluI	AGCT	4 cut(s)	44, 553, 887, 899
AlwI	GGATC	1 cut(s)	749
AoxI	GGCC	2 cut(s)	238, 1015
ApeKI	GCWGC	2 cut(s)	41, 731
ApoI	RAATTY	2 cut(s)	464, 786
AspLEI	GCGC	3 cut(s)	32, 310, 981
AspS9I	GGNCC	2 cut(s)	166, 635
AsuII	TTCGAA	2 cut(s)	321, 462
AvaII	GGWCC	2 cut(s)	166, 635
BauI	CACGAG	1 cut(s)	719
BbvI	GCAGC	2 cut(s)	53, 718
BccI	CCATC	3 cut(s)	150, 264, 980
BceAI	ACGGC	1 cut(s)	225
BcgI	CGANNNNNNTGC	2 cut(s)	331, 365
BciT130I	CCWGG	1 cut(s)	882
BfaI	CTAG	5 cut(s)	33, 494, 512, 768, 953
BfuAI	ACCTGC	1 cut(s)	233
BisI	GCNGC	3 cut(s)	42, 732, 1018
BlsI	GCNGC	3 cut(s)	43, 733, 1019
Bme1390I	CCNGG	1 cut(s)	882
Bme18I	GGWCC	2 cut(s)	166, 635
BmgT120I	GGNCC	2 cut(s)	166, 635
BmiI	GGNNCC	2 cut(s)	637, 858
BmrFI	CCNGG	1 cut(s)	882
BmsI	GCATC	2 cut(s)	351, 480
Bpu14I	TTCGAA	2 cut(s)	321, 462
BsaBI	GATNNNNATC	1 cut(s)	990
BsaJI	CCNNGG	3 cut(s)	647, 781, 827
Bsc4I	CCNNNNNNNGG	3 cut(s)	866, 902, 982
Bse1I	ACTGG	1 cut(s)	169
Bse3DI	GCAATG	2 cut(s)	508, 947
Bse8I	GATNNNNATC	1 cut(s)	990
BseBI	CCWGG	1 cut(s)	882
BseDI	CCNNGG	3 cut(s)	647, 781, 827
BseGI	GGATG	2 cut(s)	991, 991
BseJI	GATNNNNATC	1 cut(s)	990
BseLI	CCNNNNNNNGG	3 cut(s)	866, 902, 982
BseMI	GCAATG	2 cut(s)	508, 947
BseNI	ACTGG	1 cut(s)	169
BseRI	GAGGAG	3 cut(s)	41, 44, 691
BseXI	GCAGC	2 cut(s)	53, 718
BsgI	GTGCAG	1 cut(s)	60
Bsh1236I	CGCG	1 cut(s)	308
BshFI	GGCC	2 cut(s)	240, 1017
BslFI	GGGAC	1 cut(s)	228
BslI	CCNNNNNNNGG	3 cut(s)	866, 902, 982
BsmFI	GGGAC	1 cut(s)	228
BsnI	GGCC	2 cut(s)	240, 1017
Bsp119I	TTCGAA	2 cut(s)	321, 462
Bsp143I	GATC	2 cut(s)	754, 873
Bsp19I	CCATGG	2 cut(s)	647, 827
BspACI	CCGC	4 cut(s)	80, 499, 694, 1018
BspANI	GGCC	2 cut(s)	240, 1017
BspFNI	CGCG	1 cut(s)	308
BspLI	GGNNCC	2 cut(s)	637, 858
BspMI	ACCTGC	1 cut(s)	233
BspPI	GGATC	1 cut(s)	749
BspQI	GCTCTTC	1 cut(s)	332
BspT104I	TTCGAA	2 cut(s)	321, 462
BsrDI	GCAATG	2 cut(s)	508, 947
BsrI	ACTGG	1 cut(s)	169
BssECI	CCNNGG	3 cut(s)	647, 781, 827
BssMI	GATC	2 cut(s)	754, 873
BssSI	CACGAG	1 cut(s)	719
BssT1I	CCWWGG	3 cut(s)	647, 781, 827
Bst2BI	CACGAG	1 cut(s)	719
Bst2UI	CCWGG	1 cut(s)	882
Bst4CI	ACNGT	1 cut(s)	287
Bst6I	CTCTTC	1 cut(s)	332
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstBI	TTCGAA	2 cut(s)	321, 462
BstC8I	GCNNGC	4 cut(s)	398, 698, 702, 1015
BstDEI	CTNAG	1 cut(s)	423
BstDSI	CCRYGG	2 cut(s)	647, 827
BstENI	CCTNNNNNAGG	1 cut(s)	980
BstF5I	GGATG	2 cut(s)	991, 991
BstFNI	CGCG	1 cut(s)	308
BstHHI	GCGC	3 cut(s)	32, 310, 981
BstKTI	GATC	2 cut(s)	757, 876
BstMBI	GATC	2 cut(s)	754, 873
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 98, 856
BstNI	CCWGG	1 cut(s)	882
BstNSI	RCATGY	3 cut(s)	396, 400, 700
BstSCI	CCNGG	1 cut(s)	880
BstUI	CGCG	1 cut(s)	308
BstV1I	GCAGC	2 cut(s)	53, 718
BstXI	CCANNNNNNTGG	2 cut(s)	236, 1068
BsuRI	GGCC	2 cut(s)	240, 1017
BtgI	CCRYGG	2 cut(s)	647, 827
BtsCI	GGATG	2 cut(s)	991, 991
BtsI	GCAGTG	1 cut(s)	817
BtsIMutI	CAGTG	1 cut(s)	817
BveI	ACCTGC	1 cut(s)	233
Cac8I	GCNNGC	4 cut(s)	398, 698, 702, 1015
CfoI	GCGC	3 cut(s)	32, 310, 981
Cfr13I	GGNCC	2 cut(s)	166, 635
CseI	GACGC	1 cut(s)	314
Csp6I	GTAC	2 cut(s)	413, 1058
CviQI	GTAC	2 cut(s)	413, 1058
DdeI	CTNAG	1 cut(s)	423
DpnI	GATC	2 cut(s)	756, 875
DpnII	GATC	2 cut(s)	754, 873
EaeI	YGGCCR	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	332
EarI	CTCTTC	1 cut(s)	332
Eco130I	CCWWGG	3 cut(s)	647, 781, 827
Eco47I	GGWCC	2 cut(s)	166, 635
Eco57I	CTGAAG	1 cut(s)	932
EcoNI	CCTNNNNNAGG	1 cut(s)	980
EcoO109I	RGGNCCY	1 cut(s)	635
EcoRI	GAATTC	1 cut(s)	464
EcoRII	CCWGG	1 cut(s)	880
EcoT14I	CCWWGG	3 cut(s)	647, 781, 827
EcoT22I	ATGCAT	1 cut(s)	398
ErhI	CCWWGG	3 cut(s)	647, 781, 827
FaqI	GGGAC	1 cut(s)	228
Fnu4HI	GCNGC	3 cut(s)	42, 732, 1018
FokI	GGATG	2 cut(s)	978, 998
Fsp4HI	GCNGC	3 cut(s)	42, 732, 1018
FspBI	CTAG	5 cut(s)	33, 494, 512, 768, 953
FspI	TGCGCA	1 cut(s)	980
GlaI	GCGC	3 cut(s)	31, 309, 980
GluI	GCNGC	3 cut(s)	42, 732, 1018
HaeIII	GGCC	2 cut(s)	240, 1017
HgaI	GACGC	1 cut(s)	314
HhaI	GCGC	3 cut(s)	32, 310, 981
Hin6I	GCGC	3 cut(s)	30, 308, 979
HinP1I	GCGC	3 cut(s)	30, 308, 979
HindIII	AAGCTT	1 cut(s)	551
HinfI	GANTC	5 cut(s)	113, 359, 557, 625, 1078
Hpy166II	GTNNAC	3 cut(s)	222, 445, 742
Hpy188I	TCNGA	2 cut(s)	675, 711
Hpy188III	TCNNGA	3 cut(s)	245, 547, 721
Hpy8I	GTNNAC	3 cut(s)	222, 445, 742
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	6 cut(s)	201, 214, 577, 706, 847, 1005
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4V	TGCA	4 cut(s)	41, 101, 396, 734
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 98, 856
HpyF3I	CTNAG	1 cut(s)	423
HspAI	GCGC	3 cut(s)	30, 308, 979
Kzo9I	GATC	2 cut(s)	754, 873
LguI	GCTCTTC	1 cut(s)	332
LmnI	GCTCC	3 cut(s)	678, 856, 884
Lsp1109I	GCAGC	2 cut(s)	53, 718
LweI	GCATC	2 cut(s)	351, 480
MaeI	CTAG	5 cut(s)	33, 494, 512, 768, 953
MaeIII	GTNAC	3 cut(s)	433, 721, 943
MalI	GATC	2 cut(s)	756, 875
MboI	GATC	2 cut(s)	754, 873
MboII	GAAGA	7 cut(s)	136, 310, 349, 451, 595, 769, 925
MfeI	CAATTG	1 cut(s)	561
MluCI	AATT	5 cut(s)	464, 561, 786, 838, 1087
MmeI	TCCRAC	1 cut(s)	334
Mph1103I	ATGCAT	1 cut(s)	398
MseI	TTAA	4 cut(s)	483, 746, 923, 1099
MslI	CAYNNNNRTG	5 cut(s)	133, 285, 408, 804, 1025
MspA1I	CMGCKG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	882
MunI	CAATTG	1 cut(s)	561
MvaI	CCWGG	1 cut(s)	882
MvnI	CGCG	1 cut(s)	308
MwoI	GCNNNNNNNGC	3 cut(s)	38, 98, 856
NcoI	CCATGG	2 cut(s)	647, 827
NdeII	GATC	2 cut(s)	754, 873
NlaIV	GGNNCC	2 cut(s)	637, 858
NmuCI	GTSAC	3 cut(s)	433, 721, 943
NsbI	TGCGCA	1 cut(s)	980
NsiI	ATGCAT	1 cut(s)	398
NspI	RCATGY	3 cut(s)	396, 400, 700
NspV	TTCGAA	2 cut(s)	321, 462
PaeI	GCATGC	2 cut(s)	400, 700
PciSI	GCTCTTC	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PfeI	GAWTC	5 cut(s)	113, 359, 557, 625, 1078
PfoI	TCCNGGA	1 cut(s)	880
PkrI	GCNGC	3 cut(s)	43, 733, 1019
PpuMI	RGGWCCY	1 cut(s)	635
Psp5II	RGGWCCY	1 cut(s)	635
Psp6I	CCWGG	1 cut(s)	880
PspGI	CCWGG	1 cut(s)	880
PspN4I	GGNNCC	2 cut(s)	637, 858
PspPI	GGNCC	2 cut(s)	166, 635
PspPPI	RGGWCCY	1 cut(s)	635
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	2 cut(s)	414, 1059
RsaNI	GTAC	2 cut(s)	413, 1058
RseI	CAYNNNNRTG	5 cut(s)	133, 285, 408, 804, 1025
SapI	GCTCTTC	1 cut(s)	332
SaqAI	TTAA	4 cut(s)	483, 746, 923, 1099
SatI	GCNGC	3 cut(s)	42, 732, 1018
Sau3AI	GATC	2 cut(s)	754, 873
Sau96I	GGNCC	2 cut(s)	166, 635
ScrFI	CCNGG	1 cut(s)	882
SetI	ASST	7 cut(s)	46, 227, 555, 673, 889, 901, 969
SfaNI	GCATC	2 cut(s)	351, 480
SfuI	TTCGAA	2 cut(s)	321, 462
SinI	GGWCC	2 cut(s)	166, 635
SmiMI	CAYNNNNRTG	5 cut(s)	133, 285, 408, 804, 1025
SphI	GCATGC	2 cut(s)	400, 700
Sse9I	AATT	5 cut(s)	464, 561, 786, 838, 1087
SsiI	CCGC	4 cut(s)	80, 499, 694, 1018
SspI	AATATT	1 cut(s)	535
SspMI	CTAG	5 cut(s)	33, 494, 512, 768, 953
StyD4I	CCNGG	1 cut(s)	880
StyI	CCWWGG	3 cut(s)	647, 781, 827
TaaI	ACNGT	1 cut(s)	287
TaqI	TCGA	3 cut(s)	321, 462, 872
TasI	AATT	5 cut(s)	464, 561, 786, 838, 1087
TauI	GCSGC	1 cut(s)	1020
TfiI	GAWTC	5 cut(s)	113, 359, 557, 625, 1078
Tru1I	TTAA	4 cut(s)	483, 746, 923, 1099
Tru9I	TTAA	4 cut(s)	483, 746, 923, 1099
TscAI	CASTG	1 cut(s)	817
TseFI	GTSAC	3 cut(s)	433, 721, 943
TseI	GCWGC	2 cut(s)	41, 731
Tsp45I	GTSAC	3 cut(s)	433, 721, 943
TspDTI	ATGAA	7 cut(s)	5, 126, 196, 351, 457, 492, 837
TspRI	CASTG	1 cut(s)	817
VpaK11BI	GGWCC	2 cut(s)	166, 635
XagI	CCTNNNNNAGG	1 cut(s)	980
XapI	RAATTY	2 cut(s)	464, 786
XceI	RCATGY	3 cut(s)	396, 400, 700
XspI	CTAG	5 cut(s)	33, 494, 512, 768, 953
Zsp2I	ATGCAT	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.