Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002416

Physical Location & Seq

Genomic Coordinates Reverse (-)

24159587 .. 24162260

Gene Structure 2674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033185

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGTTGAATGGCTTTGGCCTATTTGTTTATGCTATTCTAGTACTAATCTTATTGCTTCTTGAACATGAAAACCAATATTGCTCTGCGGGAGTACTAGAGAAGAAGAAAAATGAGTCACAAATCGGCGCCAAATGCGACTTGTTTGATGGGAGTTGGGTTCACGATGATACATATCCACTCTACCACACATCCAGCTGCCCTTTTATTGACAGAGAGTTCGACTGTCAGAAAAATGGACGCCCGGATAATCAATATCTCAAGTATAGATGGAAGCCTAAGGGTTGTGCATTGCCCAGATTCAATGGTCAGGACTTCTTGAGGAGATTAAAGGGGAAGAAGATATTATTCGTAGGGGACTCTCTGAGCTATAACCAGTGGCAGTCACTAACATGTATGCTGTATTCTGCAGTACCCAAAGCCAAATATACTTCATCCAGTAAAGGAGATTTCTATACGTTTCTTTTGCCAGAATATGAAGTTTCTGTGATGTTTTCTCGCAATAAGTTTCTAGTGGATCTGGTCCAAACAAAGGAGGGCATGGTTCTAAACCTTGACTCTATTGAAGGAGGAAAGTTGTGGAAAGGATACGACATGCTAATCTTCAATACCTGGCATTGGTGGCTCCATACGGGACGCGATCAACCATGGAAGTACATTGAATCGGGTGGCAAGATACTGAAGGATATGGATCGTCTGGCTGCGTTTAGAGAGGGATTAACTACTTGGTCCAAATGGGTCGATTCCAACGTTGGCAACACCAAAGTTTTCTTTCAGGGCATCTCTCCAACTCATTTCAATGGAGAGGAATGGGGAGGGCAAAAATCAGCAAACTGCATAGGACAAACTCAACCTGTTAATGGCTCAACATATCCCGGAGGTTCACCACCACCGGCAGCGGTGGTCCATGAAGTATTGAACAAAATGTCACAGCCAGTAACTCTGTTGGACATAACGTTACTATCCCAACTGAGAAAAGATGGTCACCCATCTCTATATGGCATAGATGGCAAAAAGGGAAATGACTGTAGCCATTGGTGTCTTGCTGGTGTTCCGGACACATGGAATGAACTATTCTGTGCAATTCTTGCGACTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

366

Amino Acids

41.39

Weight (kDa)

7.95

Isoelectric Point (pI)

34.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	44 - 95	7.9e-25	PMR5 N terminal Domain
PC-Esterase	PF13839	97 - 360	8.7e-92	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14850 AT3G14850
fragaria_vesca	FvH4_3g17810 FvH4_3g17820 FvH4_3g17830
malus_domestica	MD03G1246700.v1.1 MD11G1262000.v1.1 MD11G1268700.v1.1 MD11G1268800.v1.1 MD11G1268900.v1.1
prunus_persica	Prupe.4G157200_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157500_v2.0.a1 Prupe.4G157600_v2.0.a1
pyrus_communis	pycom03g19570 pycom11g23100 pycom11g23770
rosa_chinensis	RchiOBHm_Chr5g0029591 RchiOBHm_Chr5g0029601 RchiOBHm_Chr5g0029611
rosa_laevigata	RLG00000033185 RLG00000033186 RLG00000033187
rosa_multiflora	Rmu_sc0001608.1_g000005 Rmu_sc0001608.1_g000006
rosa_roxburghii	Rroxscaffold_1G00050310 Rroxscaffold_1G00050320
rosa_samantha	Rh5AG207700 Rh5BG206200 Rh5BG206300 Rh5BG206400 Rh5CG228300 Rh5CG228400 Rh5CG228500 Rh5DG210000 Rh5DG210100
rosa_wichuraiana	Rw5G018880 Rw5G018890 Rw5G018900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	125
AccII	CGCG	1 cut(s)	636
AccIII	TCCGGA	1 cut(s)	1051
AciI	CCGC	2 cut(s)	86, 896
AclI	AACGTT	2 cut(s)	747, 953
AclWI	GGATC	2 cut(s)	522, 696
AcuI	CTGAAG	1 cut(s)	698
AcyI	GRCGYC	2 cut(s)	126, 238
AfaI	GTAC	4 cut(s)	42, 93, 411, 653
AfiI	CCNNNNNNNGG	3 cut(s)	529, 615, 857
AflIII	ACRYGT	1 cut(s)	389
AgsI	TTSAA	8 cut(s)	7, 62, 301, 563, 604, 659, 796, 916
AjnI	CCWGG	1 cut(s)	608
AluBI	AGCT	2 cut(s)	195, 366
AluI	AGCT	2 cut(s)	195, 366
AlwI	GGATC	2 cut(s)	522, 696
Aor13HI	TCCGGA	1 cut(s)	1051
AoxI	GGCC	1 cut(s)	16
ApeKI	GCWGC	3 cut(s)	195, 698, 893
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	3 cut(s)	520, 726, 901
AsuC2I	CCSGG	2 cut(s)	242, 873
AsuHPI	GGTGA	2 cut(s)	873, 974
AvaII	GGWCC	3 cut(s)	520, 726, 901
AxyI	CCTNAGG	1 cut(s)	276
BanI	GGYRCC	1 cut(s)	125
BbvI	GCAGC	3 cut(s)	182, 685, 905
BccI	CCATC	5 cut(s)	140, 261, 971, 994, 998
BciT130I	CCWGG	1 cut(s)	610
BciVI	GTATCC	1 cut(s)	578
BcnI	CCSGG	2 cut(s)	242, 873
BfaI	CTAG	3 cut(s)	38, 95, 509
BfmI	CTRYAG	2 cut(s)	405, 1024
BfoI	RGCGCY	1 cut(s)	129
BfuI	GTATCC	1 cut(s)	578
BisI	GCNGC	3 cut(s)	196, 699, 894
BlsI	GCNGC	3 cut(s)	197, 700, 895
BmcAI	AGTACT	2 cut(s)	42, 93
Bme1390I	CCNGG	3 cut(s)	242, 610, 873
Bme18I	GGWCC	3 cut(s)	520, 726, 901
BmgT120I	GGNCC	3 cut(s)	520, 726, 901
BmiI	GGNNCC	2 cut(s)	127, 623
BmrFI	CCNGG	3 cut(s)	242, 610, 873
BmsI	GCATC	1 cut(s)	786
BpuEI	CTTGAG	2 cut(s)	242, 337
BpuMI	CCSGG	2 cut(s)	242, 873
BsaBI	GATNNNNATC	2 cut(s)	171, 687
BsaHI	GRCGYC	2 cut(s)	126, 238
BsaJI	CCNNGG	1 cut(s)	644
BsaWI	WCCGGW	1 cut(s)	1051
Bsc4I	CCNNNNNNNGG	3 cut(s)	529, 615, 857
Bse118I	RCCGGY	1 cut(s)	889
Bse1I	ACTGG	3 cut(s)	373, 435, 932
Bse21I	CCTNAGG	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	287
Bse8I	GATNNNNATC	2 cut(s)	171, 687
BseAI	TCCGGA	1 cut(s)	1051
BseBI	CCWGG	1 cut(s)	610
BseDI	CCNNGG	1 cut(s)	644
BseGI	GGATG	2 cut(s)	188, 431
BseJI	GATNNNNATC	2 cut(s)	171, 687
BseLI	CCNNNNNNNGG	3 cut(s)	529, 615, 857
BseMI	GCAATG	1 cut(s)	287
BseMII	CTCAG	2 cut(s)	353, 959
BseNI	ACTGG	3 cut(s)	373, 435, 932
BseRI	GAGGAG	1 cut(s)	334
BseXI	GCAGC	3 cut(s)	182, 685, 905
Bsh1236I	CGCG	1 cut(s)	636
BshFI	GGCC	1 cut(s)	18
BshNI	GGYRCC	1 cut(s)	125
BsiSI	CCGG	4 cut(s)	242, 873, 890, 1052
BslFI	GGGAC	2 cut(s)	368, 645
BslI	CCNNNNNNNGG	3 cut(s)	529, 615, 857
BsmFI	GGGAC	2 cut(s)	368, 645
BsnI	GGCC	1 cut(s)	18
Bsp13I	TCCGGA	1 cut(s)	1051
Bsp143I	GATC	3 cut(s)	514, 637, 688
Bsp19I	CCATGG	1 cut(s)	644
BspACI	CCGC	2 cut(s)	86, 896
BspANI	GGCC	1 cut(s)	18
BspCNI	CTCAG	2 cut(s)	354, 960
BspEI	TCCGGA	1 cut(s)	1051
BspFNI	CGCG	1 cut(s)	636
BspLI	GGNNCC	2 cut(s)	127, 623
BspMAI	CTGCAG	1 cut(s)	409
BspPI	GGATC	2 cut(s)	522, 696
BspT107I	GGYRCC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	287
BsrFI	RCCGGY	1 cut(s)	889
BsrI	ACTGG	3 cut(s)	373, 435, 932
BssAI	RCCGGY	1 cut(s)	889
BssECI	CCNNGG	1 cut(s)	644
BssMI	GATC	3 cut(s)	514, 637, 688
BssNI	GRCGYC	2 cut(s)	126, 238
BssT1I	CCWWGG	1 cut(s)	644
Bst2UI	CCWGG	1 cut(s)	610
Bst4CI	ACNGT	2 cut(s)	224, 1025
BstACI	GRCGYC	2 cut(s)	126, 238
BstAPI	GCANNNNNTGC	1 cut(s)	1085
BstDEI	CTNAG	3 cut(s)	276, 362, 968
BstDSI	CCRYGG	1 cut(s)	644
BstEII	GGTNACC	1 cut(s)	980
BstF5I	GGATG	2 cut(s)	188, 431
BstFNI	CGCG	1 cut(s)	636
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	3 cut(s)	517, 640, 691
BstMBI	GATC	3 cut(s)	514, 637, 688
BstMWI	GCNNNNNNNGC	4 cut(s)	132, 619, 1005, 1085
BstNI	CCWGG	1 cut(s)	610
BstNSI	RCATGY	2 cut(s)	393, 595
BstPI	GGTNACC	1 cut(s)	980
BstSCI	CCNGG	3 cut(s)	240, 608, 871
BstSFI	CTRYAG	2 cut(s)	405, 1024
BstUI	CGCG	1 cut(s)	636
BstV1I	GCAGC	3 cut(s)	182, 685, 905
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
Bsu36I	CCTNAGG	1 cut(s)	276
BsuI	GTATCC	1 cut(s)	578
BsuRI	GGCC	1 cut(s)	18
BtgI	CCRYGG	1 cut(s)	644
BtsCI	GGATG	2 cut(s)	188, 431
BtsIMutI	CAGTG	1 cut(s)	380
CfoI	GCGC	1 cut(s)	128
Cfr10I	RCCGGY	1 cut(s)	889
Cfr13I	GGNCC	3 cut(s)	520, 726, 901
CseI	GACGC	2 cut(s)	246, 642
Csp6I	GTAC	4 cut(s)	41, 92, 410, 652
CviAII	CATG	7 cut(s)	65, 390, 538, 592, 645, 905, 1059
CviQI	GTAC	4 cut(s)	41, 92, 410, 652
DdeI	CTNAG	3 cut(s)	276, 362, 968
DinI	GGCGCC	1 cut(s)	127
DpnI	GATC	3 cut(s)	516, 639, 690
DpnII	GATC	3 cut(s)	514, 637, 688
Eco130I	CCWWGG	1 cut(s)	644
Eco47I	GGWCC	3 cut(s)	520, 726, 901
Eco57I	CTGAAG	1 cut(s)	698
Eco81I	CCTNAGG	1 cut(s)	276
Eco91I	GGTNACC	1 cut(s)	980
EcoO65I	GGTNACC	1 cut(s)	980
EcoRII	CCWGG	1 cut(s)	608
EcoT14I	CCWWGG	1 cut(s)	644
EgeI	GGCGCC	1 cut(s)	127
EheI	GGCGCC	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	644
FaeI	CATG	7 cut(s)	68, 393, 541, 595, 648, 908, 1062
FaqI	GGGAC	2 cut(s)	368, 645
FatI	CATG	7 cut(s)	64, 389, 537, 591, 644, 904, 1058
FauI	CCCGC	1 cut(s)	79
Fnu4HI	GCNGC	3 cut(s)	196, 699, 894
FokI	GGATG	2 cut(s)	175, 418
Fsp4HI	GCNGC	3 cut(s)	196, 699, 894
FspBI	CTAG	3 cut(s)	38, 95, 509
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	3 cut(s)	196, 699, 894
HaeII	RGCGCY	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	18
HapII	CCGG	4 cut(s)	242, 873, 890, 1052
HgaI	GACGC	2 cut(s)	246, 642
HhaI	GCGC	1 cut(s)	128
Hin1I	GRCGYC	2 cut(s)	126, 238
Hin1II	CATG	7 cut(s)	68, 393, 541, 595, 648, 908, 1062
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HinfI	GANTC	6 cut(s)	113, 297, 356, 554, 659, 740
HpaII	CCGG	4 cut(s)	242, 873, 890, 1052
HphI	GGTGA	2 cut(s)	873, 974
Hpy166II	GTNNAC	2 cut(s)	160, 881
Hpy188I	TCNGA	2 cut(s)	228, 363
Hpy188III	TCNNGA	5 cut(s)	59, 161, 308, 316, 1052
Hpy8I	GTNNAC	2 cut(s)	160, 881
HpyAV	CCTTC	2 cut(s)	557, 673
HpyCH4III	ACNGT	2 cut(s)	224, 1025
HpyCH4IV	ACGT	3 cut(s)	455, 747, 953
HpyCH4V	TGCA	4 cut(s)	287, 407, 834, 1079
HpyF10VI	GCNNNNNNNGC	4 cut(s)	132, 619, 1005, 1085
HpyF3I	CTNAG	3 cut(s)	276, 362, 968
HpySE526I	ACGT	3 cut(s)	455, 747, 953
Hsp92I	GRCGYC	2 cut(s)	126, 238
Hsp92II	CATG	7 cut(s)	68, 393, 541, 595, 648, 908, 1062
HspAI	GCGC	1 cut(s)	126
KasI	GGCGCC	1 cut(s)	125
Kpn2I	TCCGGA	1 cut(s)	1051
Kzo9I	GATC	3 cut(s)	514, 637, 688
LmnI	GCTCC	1 cut(s)	627
Lsp1109I	GCAGC	3 cut(s)	182, 685, 905
LweI	GCATC	1 cut(s)	786
MaeI	CTAG	3 cut(s)	38, 95, 509
MaeII	ACGT	3 cut(s)	455, 747, 953
MaeIII	GTNAC	6 cut(s)	114, 381, 924, 934, 954, 980
MalI	GATC	3 cut(s)	516, 639, 690
MboI	GATC	3 cut(s)	514, 637, 688
MboII	GAAGA	5 cut(s)	112, 115, 346, 349, 592
MflI	RGATCY	1 cut(s)	514
MluCI	AATT	1 cut(s)	1080
Mly113I	GGCGCC	1 cut(s)	126
MlyI	GAGTC	3 cut(s)	122, 350, 548
MmeI	TCCRAC	3 cut(s)	768, 809, 924
MnlI	CCTC	7 cut(s)	312, 526, 560, 703, 796, 806, 869
MroI	TCCGGA	1 cut(s)	1051
MseI	TTAA	4 cut(s)	326, 716, 855, 1096
MslI	CAYNNNNRTG	2 cut(s)	388, 795
MspA1I	CMGCKG	2 cut(s)	195, 896
MspI	CCGG	4 cut(s)	242, 873, 890, 1052
MspR9I	CCNGG	3 cut(s)	242, 610, 873
MvaI	CCWGG	1 cut(s)	610
MvnI	CGCG	1 cut(s)	636
MwoI	GCNNNNNNNGC	4 cut(s)	132, 619, 1005, 1085
NarI	GGCGCC	1 cut(s)	126
NciI	CCSGG	2 cut(s)	242, 873
NcoI	CCATGG	1 cut(s)	644
NdeII	GATC	3 cut(s)	514, 637, 688
NlaIII	CATG	7 cut(s)	68, 393, 541, 595, 648, 908, 1062
NlaIV	GGNNCC	2 cut(s)	127, 623
NmuCI	GTSAC	4 cut(s)	114, 381, 924, 980
NspI	RCATGY	2 cut(s)	393, 595
PciI	ACATGT	1 cut(s)	389
PcsI	WCGNNNNNNNCGW	1 cut(s)	744
PfeI	GAWTC	3 cut(s)	297, 659, 740
PfoI	TCCNGGA	1 cut(s)	871
PkrI	GCNGC	3 cut(s)	197, 700, 895
PleI	GAGTC	3 cut(s)	121, 350, 548
PluTI	GGCGCC	1 cut(s)	129
PpsI	GAGTC	3 cut(s)	121, 350, 548
PscI	ACATGT	1 cut(s)	389
Psp1406I	AACGTT	2 cut(s)	747, 953
Psp6I	CCWGG	1 cut(s)	608
PspEI	GGTNACC	1 cut(s)	980
PspGI	CCWGG	1 cut(s)	608
PspN4I	GGNNCC	2 cut(s)	127, 623
PspPI	GGNCC	3 cut(s)	520, 726, 901
PstI	CTGCAG	1 cut(s)	409
PsuI	RGATCY	1 cut(s)	514
PvuII	CAGCTG	1 cut(s)	195
RsaI	GTAC	4 cut(s)	42, 93, 411, 653
RsaNI	GTAC	4 cut(s)	41, 92, 410, 652
RseI	CAYNNNNRTG	2 cut(s)	388, 795
SaqAI	TTAA	4 cut(s)	326, 716, 855, 1096
SatI	GCNGC	3 cut(s)	196, 699, 894
Sau3AI	GATC	3 cut(s)	514, 637, 688
Sau96I	GGNCC	3 cut(s)	520, 726, 901
ScaI	AGTACT	2 cut(s)	42, 93
SchI	GAGTC	3 cut(s)	122, 350, 548
ScrFI	CCNGG	3 cut(s)	242, 610, 873
SetI	ASST	9 cut(s)	197, 368, 458, 552, 611, 750, 853, 880, 956
SfaNI	GCATC	1 cut(s)	786
SfcI	CTRYAG	2 cut(s)	405, 1024
SfoI	GGCGCC	1 cut(s)	127
SinI	GGWCC	3 cut(s)	520, 726, 901
SmiMI	CAYNNNNRTG	2 cut(s)	388, 795
SmlI	CTYRAG	2 cut(s)	257, 316
SmoI	CTYRAG	2 cut(s)	257, 316
Sse9I	AATT	1 cut(s)	1080
SsiI	CCGC	2 cut(s)	86, 896
SspDI	GGCGCC	1 cut(s)	125
SspI	AATATT	1 cut(s)	77
SspMI	CTAG	3 cut(s)	38, 95, 509
StyD4I	CCNGG	3 cut(s)	240, 608, 871
StyI	CCWWGG	1 cut(s)	644
TaaI	ACNGT	2 cut(s)	224, 1025
TaiI	ACGT	3 cut(s)	458, 750, 956
TaqI	TCGA	2 cut(s)	219, 738
TasI	AATT	1 cut(s)	1080
TatI	WGTACW	3 cut(s)	40, 91, 651
TfiI	GAWTC	3 cut(s)	297, 659, 740
Tru1I	TTAA	4 cut(s)	326, 716, 855, 1096
Tru9I	TTAA	4 cut(s)	326, 716, 855, 1096
TscAI	CASTG	1 cut(s)	380
TseFI	GTSAC	4 cut(s)	114, 381, 924, 980
TseI	GCWGC	3 cut(s)	195, 698, 893
Tsp45I	GTSAC	4 cut(s)	114, 381, 924, 980
TspDTI	ATGAA	5 cut(s)	81, 420, 489, 921, 1080
TspRI	CASTG	1 cut(s)	380
VpaK11BI	GGWCC	3 cut(s)	520, 726, 901
XceI	RCATGY	2 cut(s)	393, 595
XspI	CTAG	3 cut(s)	38, 95, 509
ZrmI	AGTACT	2 cut(s)	42, 93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.