Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002416

Physical Location & Seq

Genomic Coordinates Reverse (-)

26108378 .. 26111414

Gene Structure 3037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g23100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGAGATTGATCTCGTGGCAGGAGGTAAAAGCAAGAAGATGAAGCGCACTGCGCCCAAGTCCGATGATATCAATCTCAAGCTTCTCGTCAAGCTGTACCGTTTTCCTCTCCGGAGGACTAGAAGCAAGTTGAATGCAATCATTCTTAAACATTTGTTCATGAGTAAAGTCAACAAGGCACCCTTTCTCTCTCGAGGTAGATGGGTTCTGGACCAGTCCTACCCGCTCTACGATCCTTCCTCATGCCCCTTCATTGAGCGCGAGTTTAGCTGCCAAAAGAATGGCCGTCCCGATCAGATTCACACCAAATACAGATGGCAGCCACTTGACTGTGATTTAGCAAGATTTGACGCACTTGACTTCTTCGAAAGATTTAGAGGGAAGAACATCATTTTCGTTGGAGATTCATTGAGCCGAAATCAATGGCAATCCTTGACATGCTTACTTCACTCTGCTGTACCAACTGCTACGAATAATGTGACAAGAGTAGATACTGTATCTATCTTCGAATTCACGGATTATGGAATTAGAGTGATGCTAGACAGTAATATGTATCTAGTAGATATTGTAAAAGAAAAGATTGGGAGGGTCTTGAAGCTTGATTCAATTGTGGGAGGCAACTTATGGAAGGATATTGACGTGCTCATCTTTAACACTTGGCATTGGTGGAATCGCAGAGGACCCTCTCAACCATGGGATTATGTTGAAGTAGGAGGCCAGACCAGCAAAGACATTGACCGCATGCTTGCTTTTCAGAAGGCGCTCGAGACTTGGGCTGGATGGGTGGATTCAAACATTGATCCAGCAAAGTCTAGGGTTTTCTTCCAAGGAATTTCTCCCTCTCATTACAATGGCAGTGAATGGCATGAACCAAGTGCAAAAAGTTGTGTCGGGCAGAAGGAACCTTTGCTTGGGCCCTATCCAGGAGCTTCACCACCAGCTTTGGGCGTGCTGAAGAATGTGTTAAGCACTATCCAAAAACCAGTGACATTACTAGATATAACAAACCTCTCGCTCCTGCGTAAAGATGGGCATCCTTCAATTTATGGGTTGGGAGGCCGCACGGGAATGGACTGTACTCATTGGTGTCTCTGTGGAGTCCCAGATACTTGGAATGAGATTCTCTACAATTTTTTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

381

Amino Acids

43.44

Weight (kDa)

9.13

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14850 AT3G14850
fragaria_vesca	FvH4_3g17810 FvH4_3g17820 FvH4_3g17830
malus_domestica	MD03G1246700.v1.1 MD11G1262000.v1.1 MD11G1268700.v1.1 MD11G1268800.v1.1 MD11G1268900.v1.1
prunus_persica	Prupe.4G157200_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157500_v2.0.a1 Prupe.4G157600_v2.0.a1
pyrus_communis	pycom03g19570 pycom11g23100 pycom11g23770
rosa_chinensis	RchiOBHm_Chr5g0029591 RchiOBHm_Chr5g0029601 RchiOBHm_Chr5g0029611
rosa_laevigata	RLG00000033185 RLG00000033186 RLG00000033187
rosa_multiflora	Rmu_sc0001608.1_g000005 Rmu_sc0001608.1_g000006
rosa_roxburghii	Rroxscaffold_1G00050310 Rroxscaffold_1G00050320
rosa_samantha	Rh5AG207700 Rh5BG206200 Rh5BG206300 Rh5BG206400 Rh5CG228300 Rh5CG228400 Rh5CG228500 Rh5DG210000 Rh5DG210100
rosa_wichuraiana	Rw5G018880 Rw5G018890 Rw5G018900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	178
AccBSI	CCGCTC	1 cut(s)	226
AccII	CGCG	1 cut(s)	261
AccIII	TCCGGA	1 cut(s)	111
AciI	CCGC	3 cut(s)	224, 739, 1060
AclWI	GGATC	2 cut(s)	227, 794
AcoI	YGGCCR	1 cut(s)	283
AcsI	RAATTY	2 cut(s)	509, 831
AcuI	CTGAAG	1 cut(s)	974
AfaI	GTAC	3 cut(s)	98, 459, 1078
AfiI	CCNNNNNNNGG	3 cut(s)	911, 923, 944
AgsI	TTSAA	6 cut(s)	133, 595, 606, 707, 792, 1041
AjiI	CACGTC	1 cut(s)	640
AjnI	CCWGG	1 cut(s)	922
AjuI	GAANNNNNNNTTGG	2 cut(s)	894, 926
AluBI	AGCT	6 cut(s)	82, 94, 270, 598, 929, 941
AluI	AGCT	6 cut(s)	82, 94, 270, 598, 929, 941
Alw21I	GWGCWC	1 cut(s)	645
Alw26I	GTCTC	2 cut(s)	761, 1094
AlwI	GGATC	2 cut(s)	227, 794
Ama87I	CYCGRG	2 cut(s)	192, 764
Aor13HI	TCCGGA	1 cut(s)	111
AoxI	GGCC	4 cut(s)	283, 715, 914, 1057
ApaI	GGGCCC	1 cut(s)	918
ApeKI	GCWGC	2 cut(s)	270, 319
ApoI	RAATTY	2 cut(s)	509, 831
AspLEI	GCGC	4 cut(s)	48, 55, 261, 763
AspS9I	GGNCC	4 cut(s)	211, 680, 914, 915
AsuHPI	GGTGA	1 cut(s)	924
AsuII	TTCGAA	2 cut(s)	366, 507
AvaI	CYCGRG	2 cut(s)	192, 764
AvaII	GGWCC	2 cut(s)	211, 680
BaeGI	GKGCMC	1 cut(s)	918
BanI	GGYRCC	1 cut(s)	178
BanII	GRGCYC	1 cut(s)	918
BauI	CACGAG	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	645
BbvI	GCAGC	2 cut(s)	257, 331
BccI	CCATC	4 cut(s)	195, 309, 774, 1022
BceAI	ACGGC	1 cut(s)	270
BciT130I	CCWGG	1 cut(s)	924
BcoDI	GTCTC	2 cut(s)	761, 1094
BfaI	CTAG	5 cut(s)	120, 539, 557, 813, 995
BfoI	RGCGCY	1 cut(s)	764
BisI	GCNGC	3 cut(s)	271, 320, 1060
BlsI	GCNGC	3 cut(s)	272, 321, 1061
Bme1390I	CCNGG	1 cut(s)	924
Bme18I	GGWCC	2 cut(s)	211, 680
BmeT110I	CYCGRG	2 cut(s)	192, 764
BmgBI	CACGTC	1 cut(s)	640
BmgT120I	GGNCC	4 cut(s)	211, 680, 914, 915
BmiI	GGNNCC	4 cut(s)	180, 682, 903, 916
BmrFI	CCNGG	1 cut(s)	924
BmsI	GCATC	2 cut(s)	525, 1042
Bpu14I	TTCGAA	2 cut(s)	366, 507
BpuEI	CTTGAG	1 cut(s)	62
BsaBI	GATNNNNATC	2 cut(s)	72, 1032
BsaJI	CCNNGG	2 cut(s)	692, 826
BsaWI	WCCGGW	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	3 cut(s)	911, 923, 944
Bse1I	ACTGG	2 cut(s)	214, 983
Bse8I	GATNNNNATC	2 cut(s)	72, 1032
BseAI	TCCGGA	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	924
BseDI	CCNNGG	2 cut(s)	692, 826
BseGI	GGATG	2 cut(s)	785, 1033
BseJI	GATNNNNATC	2 cut(s)	72, 1032
BseLI	CCNNNNNNNGG	3 cut(s)	911, 923, 944
BseNI	ACTGG	2 cut(s)	214, 983
BseSI	GKGCMC	1 cut(s)	918
BseXI	GCAGC	2 cut(s)	257, 331
Bsh1236I	CGCG	1 cut(s)	261
BshFI	GGCC	4 cut(s)	285, 717, 916, 1059
BshNI	GGYRCC	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	645
BsiHKCI	CYCGRG	2 cut(s)	192, 764
BsiSI	CCGG	1 cut(s)	112
BslFI	GGGAC	2 cut(s)	273, 1085
BslI	CCNNNNNNNGG	3 cut(s)	911, 923, 944
BsmAI	GTCTC	2 cut(s)	761, 1094
BsmFI	GGGAC	2 cut(s)	273, 1085
BsmI	GAATGC	1 cut(s)	139
BsnI	GGCC	4 cut(s)	285, 717, 916, 1059
BsoBI	CYCGRG	2 cut(s)	192, 764
Bsp119I	TTCGAA	2 cut(s)	366, 507
Bsp120I	GGGCCC	1 cut(s)	914
Bsp1286I	GDGCHC	2 cut(s)	645, 918
Bsp13I	TCCGGA	1 cut(s)	111
Bsp143I	GATC	4 cut(s)	10, 232, 292, 799
Bsp19I	CCATGG	1 cut(s)	692
BspACI	CCGC	3 cut(s)	224, 739, 1060
BspANI	GGCC	4 cut(s)	285, 717, 916, 1059
BspEI	TCCGGA	1 cut(s)	111
BspFNI	CGCG	1 cut(s)	261
BspHI	TCATGA	1 cut(s)	159
BspLI	GGNNCC	4 cut(s)	180, 682, 903, 916
BspPI	GGATC	2 cut(s)	227, 794
BspT104I	TTCGAA	2 cut(s)	366, 507
BspT107I	GGYRCC	1 cut(s)	178
BsrBI	CCGCTC	1 cut(s)	226
BsrI	ACTGG	2 cut(s)	214, 983
BssECI	CCNNGG	2 cut(s)	692, 826
BssMI	GATC	4 cut(s)	10, 232, 292, 799
BssSI	CACGAG	1 cut(s)	14
BssT1I	CCWWGG	2 cut(s)	692, 826
Bst2BI	CACGAG	1 cut(s)	14
Bst2UI	CCWGG	1 cut(s)	924
Bst4CI	ACNGT	5 cut(s)	101, 332, 496, 545, 1076
BstBI	TTCGAA	2 cut(s)	366, 507
BstC8I	GCNNGC	3 cut(s)	743, 747, 950
BstDSI	CCRYGG	1 cut(s)	692
BstF5I	GGATG	2 cut(s)	785, 1033
BstFNI	CGCG	1 cut(s)	261
BstH2I	RGCGCY	1 cut(s)	764
BstHHI	GCGC	4 cut(s)	48, 55, 261, 763
BstKTI	GATC	4 cut(s)	13, 235, 295, 802
BstMAI	GTCTC	2 cut(s)	761, 1094
BstMBI	GATC	4 cut(s)	10, 232, 292, 799
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 267, 723
BstNI	CCWGG	1 cut(s)	924
BstNSI	RCATGY	2 cut(s)	441, 745
BstSCI	CCNGG	1 cut(s)	922
BstSLI	GKGCMC	1 cut(s)	918
BstUI	CGCG	1 cut(s)	261
BstV1I	GCAGC	2 cut(s)	257, 331
BstXI	CCANNNNNNTGG	2 cut(s)	281, 1110
BsuRI	GGCC	4 cut(s)	285, 717, 916, 1059
BtgI	CCRYGG	1 cut(s)	692
BtrI	CACGTC	1 cut(s)	640
BtsCI	GGATG	2 cut(s)	785, 1033
BtsI	GCAGTG	2 cut(s)	48, 862
BtsIMutI	CAGTG	3 cut(s)	48, 862, 990
Cac8I	GCNNGC	3 cut(s)	743, 747, 950
CciI	TCATGA	1 cut(s)	159
CfoI	GCGC	4 cut(s)	48, 55, 261, 763
Cfr13I	GGNCC	4 cut(s)	211, 680, 914, 915
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	3 cut(s)	97, 458, 1077
CspCI	CAANNNNNGTGG	2 cut(s)	924, 959
CviAII	CATG	6 cut(s)	160, 243, 438, 693, 742, 866
CviQI	GTAC	3 cut(s)	97, 458, 1077
DpnI	GATC	4 cut(s)	12, 234, 294, 801
DpnII	GATC	4 cut(s)	10, 232, 292, 799
EaeI	YGGCCR	1 cut(s)	283
Eco130I	CCWWGG	2 cut(s)	692, 826
Eco24I	GRGCYC	1 cut(s)	918
Eco32I	GATATC	1 cut(s)	70
Eco47I	GGWCC	2 cut(s)	211, 680
Eco57I	CTGAAG	1 cut(s)	974
Eco88I	CYCGRG	2 cut(s)	192, 764
EcoO109I	RGGNCCY	2 cut(s)	680, 915
EcoRI	GAATTC	1 cut(s)	509
EcoRII	CCWGG	1 cut(s)	922
EcoRV	GATATC	1 cut(s)	70
EcoT14I	CCWWGG	2 cut(s)	692, 826
EcoT38I	GRGCYC	1 cut(s)	918
ErhI	CCWWGG	2 cut(s)	692, 826
FaeI	CATG	6 cut(s)	163, 246, 441, 696, 745, 869
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	2 cut(s)	273, 1085
FatI	CATG	6 cut(s)	159, 242, 437, 692, 741, 865
FauI	CCCGC	1 cut(s)	231
Fnu4HI	GCNGC	3 cut(s)	271, 320, 1060
FokI	GGATG	2 cut(s)	792, 1020
FriOI	GRGCYC	1 cut(s)	918
Fsp4HI	GCNGC	3 cut(s)	271, 320, 1060
FspBI	CTAG	5 cut(s)	120, 539, 557, 813, 995
GlaI	GCGC	4 cut(s)	47, 54, 260, 762
GluI	GCNGC	3 cut(s)	271, 320, 1060
HaeII	RGCGCY	1 cut(s)	764
HaeIII	GGCC	4 cut(s)	285, 717, 916, 1059
HapII	CCGG	1 cut(s)	112
HgaI	GACGC	1 cut(s)	359
HhaI	GCGC	4 cut(s)	48, 55, 261, 763
Hin1II	CATG	6 cut(s)	163, 246, 441, 696, 745, 869
Hin6I	GCGC	4 cut(s)	46, 53, 259, 761
HinP1I	GCGC	4 cut(s)	46, 53, 259, 761
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HindIII	AAGCTT	2 cut(s)	80, 596
HinfI	GANTC	7 cut(s)	298, 404, 602, 670, 788, 1098, 1120
HpaII	CCGG	1 cut(s)	112
HphI	GGTGA	1 cut(s)	924
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	3 cut(s)	64, 297, 756
Hpy188III	TCNNGA	7 cut(s)	112, 160, 192, 209, 290, 592, 766
Hpy8I	GTNNAC	1 cut(s)	172
HpyAV	CCTTC	6 cut(s)	246, 259, 622, 751, 892, 1047
HpyCH4III	ACNGT	5 cut(s)	101, 332, 496, 545, 1076
HpyCH4IV	ACGT	1 cut(s)	639
HpyCH4V	TGCA	2 cut(s)	137, 878
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 267, 723
HpySE526I	ACGT	1 cut(s)	639
Hsp92II	CATG	6 cut(s)	163, 246, 441, 696, 745, 869
HspAI	GCGC	4 cut(s)	46, 53, 259, 761
Kpn2I	TCCGGA	1 cut(s)	111
Kzo9I	GATC	4 cut(s)	10, 232, 292, 799
LmnI	GCTCC	2 cut(s)	926, 1020
Lsp1109I	GCAGC	2 cut(s)	257, 331
LweI	GCATC	2 cut(s)	525, 1042
MaeI	CTAG	5 cut(s)	120, 539, 557, 813, 995
MaeII	ACGT	1 cut(s)	639
MaeIII	GTNAC	2 cut(s)	478, 985
MalI	GATC	4 cut(s)	12, 234, 294, 801
MbiI	CCGCTC	1 cut(s)	226
MboI	GATC	4 cut(s)	10, 232, 292, 799
MboII	GAAGA	6 cut(s)	49, 355, 394, 496, 814, 967
MfeI	CAATTG	1 cut(s)	606
MhlI	GDGCHC	2 cut(s)	645, 918
MluCI	AATT	6 cut(s)	509, 525, 606, 831, 1041, 1129
MlyI	GAGTC	1 cut(s)	1107
MmeI	TCCRAC	1 cut(s)	379
MroI	TCCGGA	1 cut(s)	111
MseI	TTAA	3 cut(s)	147, 651, 965
MslI	CAYNNNNRTG	2 cut(s)	849, 1067
MspI	CCGG	1 cut(s)	112
MspR9I	CCNGG	1 cut(s)	924
MunI	CAATTG	1 cut(s)	606
Mva1269I	GAATGC	1 cut(s)	139
MvaI	CCWGG	1 cut(s)	924
MvnI	CGCG	1 cut(s)	261
MwoI	GCNNNNNNNGC	3 cut(s)	52, 267, 723
NcoI	CCATGG	1 cut(s)	692
NdeII	GATC	4 cut(s)	10, 232, 292, 799
NlaIII	CATG	6 cut(s)	163, 246, 441, 696, 745, 869
NlaIV	GGNNCC	4 cut(s)	180, 682, 903, 916
NmuCI	GTSAC	2 cut(s)	478, 985
NspI	RCATGY	2 cut(s)	441, 745
NspV	TTCGAA	2 cut(s)	366, 507
PaeI	GCATGC	1 cut(s)	745
PaeR7I	CTCGAG	2 cut(s)	192, 764
PagI	TCATGA	1 cut(s)	159
PctI	GAATGC	1 cut(s)	139
PfeI	GAWTC	6 cut(s)	298, 404, 602, 670, 788, 1120
PfoI	TCCNGGA	1 cut(s)	922
PkrI	GCNGC	3 cut(s)	272, 321, 1061
PleI	GAGTC	1 cut(s)	1106
PpsI	GAGTC	1 cut(s)	1106
PpuMI	RGGWCCY	1 cut(s)	680
Psp5II	RGGWCCY	1 cut(s)	680
Psp6I	CCWGG	1 cut(s)	922
PspGI	CCWGG	1 cut(s)	922
PspN4I	GGNNCC	4 cut(s)	180, 682, 903, 916
PspOMI	GGGCCC	1 cut(s)	914
PspPI	GGNCC	4 cut(s)	211, 680, 914, 915
PspPPI	RGGWCCY	1 cut(s)	680
RsaI	GTAC	3 cut(s)	98, 459, 1078
RsaNI	GTAC	3 cut(s)	97, 458, 1077
RseI	CAYNNNNRTG	2 cut(s)	849, 1067
SaqAI	TTAA	3 cut(s)	147, 651, 965
SatI	GCNGC	3 cut(s)	271, 320, 1060
Sau3AI	GATC	4 cut(s)	10, 232, 292, 799
Sau96I	GGNCC	4 cut(s)	211, 680, 914, 915
SchI	GAGTC	1 cut(s)	1107
ScrFI	CCNGG	1 cut(s)	924
SduI	GDGCHC	2 cut(s)	645, 918
SfaNI	GCATC	2 cut(s)	525, 1042
Sfr274I	CTCGAG	2 cut(s)	192, 764
SfuI	TTCGAA	2 cut(s)	366, 507
SinI	GGWCC	2 cut(s)	211, 680
SlaI	CTCGAG	2 cut(s)	192, 764
SmiMI	CAYNNNNRTG	2 cut(s)	849, 1067
SmlI	CTYRAG	3 cut(s)	77, 192, 764
SmoI	CTYRAG	3 cut(s)	77, 192, 764
SphI	GCATGC	1 cut(s)	745
Sse9I	AATT	6 cut(s)	509, 525, 606, 831, 1041, 1129
SsiI	CCGC	3 cut(s)	224, 739, 1060
SspMI	CTAG	5 cut(s)	120, 539, 557, 813, 995
StyD4I	CCNGG	1 cut(s)	922
StyI	CCWWGG	2 cut(s)	692, 826
TaaI	ACNGT	5 cut(s)	101, 332, 496, 545, 1076
TaiI	ACGT	1 cut(s)	642
TaqI	TCGA	4 cut(s)	193, 366, 507, 765
TasI	AATT	6 cut(s)	509, 525, 606, 831, 1041, 1129
TatI	WGTACW	1 cut(s)	1076
TauI	GCSGC	1 cut(s)	1062
TfiI	GAWTC	6 cut(s)	298, 404, 602, 670, 788, 1120
Tru1I	TTAA	3 cut(s)	147, 651, 965
Tru9I	TTAA	3 cut(s)	147, 651, 965
TscAI	CASTG	3 cut(s)	55, 862, 990
TseFI	GTSAC	2 cut(s)	478, 985
TseI	GCWGC	2 cut(s)	270, 319
Tsp45I	GTSAC	2 cut(s)	478, 985
TspDTI	ATGAA	5 cut(s)	56, 148, 241, 396, 882
TspGWI	ACGGA	1 cut(s)	530
TspRI	CASTG	3 cut(s)	55, 862, 990
VpaK11BI	GGWCC	2 cut(s)	211, 680
XapI	RAATTY	2 cut(s)	509, 831
XceI	RCATGY	2 cut(s)	441, 745
XhoI	CTCGAG	2 cut(s)	192, 764
XspI	CTAG	5 cut(s)	120, 539, 557, 813, 995

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.