Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002587

Physical Location & Seq

Genomic Coordinates Forward (+)

6325858 .. 6327692

Gene Structure 1835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G18430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGGGAATACTTCATCGATGCTGACTCAGTACGACATCGAAGAAGTTCAGAGTCATTGTCATGATCTATTTGAGCAGCAGGAGATTTTATCTCTGTATCAACGGTTTTGCCAGTTAGATCGAAACGCAAAAGGATTTATATCTGCTGATGAGTTTCTCTCTGTGCCTGAGTTTGCGATGAATCCACTCTCTCAGAGGCTGCTTAAGATGGTTGATGGTTTGAACTTTAAGGATTTTGTTGCTTTCTTGTCTGCGTTTAGTGCCAAGGCTAGTCTAAGACAGAAAGTTCAATTGATCTTTAAAGTCTATGATTCGGACTGCAACGGGAAGGTCTCTTTTAAAGATATCATGGAAGTGTTGCGTGACTTATCGGGATCATTCATGTCTGATGAGCAAAGAGAGCAAGTACTGAGCCAGGTTTTGAAGGAATCGGGCTACACGAGTGACTCATTCTTAACTCTGGAGGATTTCATAAAGATCTTTGGGAGTAGTAGACCGGAGATGGACGTTGAAATTCCTGTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

175

Amino Acids

20.03

Weight (kDa)

4.61

Isoelectric Point (pI)

36.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	32 - 120	3.5e-09	EF-hand domain pair
EF-hand_7	PF13499	94 - 161	1e-07	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18430 AT3G18430 AT3G18430
fragaria_vesca	FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_6g29301 FvH4_6g29301
malus_domestica	MD02G1005100.v1.1 MD17G1216100.v1.1
prunus_persica	Prupe.3G092200_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1
pyrus_communis	pycom02g00390 pycom15g13350 pycom17g22070
rosa_chinensis	RchiOBHm_Chr2g0085251 RchiOBHm_Chr2g0134491
rosa_laevigata	RLG00000015671 RLG00000019396 RLG00000019398
rosa_multiflora	Rmu_sc0005464.1_g000027
rosa_roxburghii	Rroxscaffold_2G00110170 Rroxscaffold_2G00155520
rosa_rugosa	Rorug01G0458600 Rorug01G0458600 Rorug02G0317500 Rorug02G0317600 Rorug02G0317700
rosa_samantha	Rh2AG007300 Rh2AG375600 Rh2BG007900 Rh2CG008700 Rh2CG354100 Rh2DG009000 Rh2DG393200
rosa_wichuraiana	Rw2G000690 Rw2G030150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	493
AclWI	GGATC	1 cut(s)	382
AcsI	RAATTY	1 cut(s)	513
AfaI	GTAC	2 cut(s)	32, 408
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	4 cut(s)	223, 290, 424, 512
AjnI	CCWGG	1 cut(s)	414
Alw26I	GTCTC	1 cut(s)	337
AlwI	GGATC	1 cut(s)	382
AlwNI	CAGNNNCTG	1 cut(s)	199
ApeKI	GCWGC	2 cut(s)	76, 199
ApoI	RAATTY	1 cut(s)	513
Asp700I	GAANNNNTTC	1 cut(s)	45
BauI	CACGAG	1 cut(s)	439
BbvI	GCAGC	2 cut(s)	88, 186
BccI	CCATC	3 cut(s)	202, 209, 496
BciT130I	CCWGG	1 cut(s)	416
BcoDI	GTCTC	1 cut(s)	337
BfaI	CTAG	1 cut(s)	270
BfrI	CTTAAG	1 cut(s)	203
BglII	AGATCT	1 cut(s)	477
BisI	GCNGC	2 cut(s)	77, 200
BlsI	GCNGC	2 cut(s)	78, 201
BmcAI	AGTACT	1 cut(s)	408
Bme1390I	CCNGG	1 cut(s)	416
BmrFI	CCNGG	1 cut(s)	416
BmsI	GCATC	1 cut(s)	9
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
BpmI	CTGGAG	1 cut(s)	482
Bsa29I	ATCGAT	1 cut(s)	17
BsaBI	GATNNNNATC	1 cut(s)	139
BsaI	GGTCTC	1 cut(s)	337
BsaJI	CCNNGG	1 cut(s)	264
BsaWI	WCCGGW	1 cut(s)	496
Bse1I	ACTGG	1 cut(s)	112
Bse8I	GATNNNNATC	1 cut(s)	139
BseBI	CCWGG	1 cut(s)	416
BseCI	ATCGAT	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	264
BseJI	GATNNNNATC	1 cut(s)	139
BseMII	CTCAG	4 cut(s)	41, 159, 206, 401
BseNI	ACTGG	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	88, 186
BshVI	ATCGAT	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	497
BsmAI	GTCTC	1 cut(s)	337
Bso31I	GGTCTC	1 cut(s)	337
Bsp143I	GATC	5 cut(s)	64, 118, 294, 374, 477
BspCNI	CTCAG	4 cut(s)	40, 160, 205, 402
BspDI	ATCGAT	1 cut(s)	17
BspHI	TCATGA	1 cut(s)	61
BspPI	GGATC	1 cut(s)	382
BspTI	CTTAAG	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	337
BsrI	ACTGG	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	5 cut(s)	64, 118, 294, 374, 477
BssSI	CACGAG	1 cut(s)	439
BssT1I	CCWWGG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	439
Bst2UI	CCWGG	1 cut(s)	416
Bst4CI	ACNGT	1 cut(s)	105
BstAFI	CTTAAG	1 cut(s)	203
BstDEI	CTNAG	5 cut(s)	27, 168, 192, 275, 410
BstKTI	GATC	5 cut(s)	67, 121, 297, 377, 480
BstMAI	GTCTC	1 cut(s)	337
BstMBI	GATC	5 cut(s)	64, 118, 294, 374, 477
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 400
BstNI	CCWGG	1 cut(s)	416
BstSCI	CCNGG	1 cut(s)	414
BstV1I	GCAGC	2 cut(s)	88, 186
BstX2I	RGATCY	1 cut(s)	477
BstYI	RGATCY	1 cut(s)	477
Bsu15I	ATCGAT	1 cut(s)	17
BsuTUI	ATCGAT	1 cut(s)	17
BtgZI	GCGATG	1 cut(s)	191
CaiI	CAGNNNCTG	1 cut(s)	199
CciI	TCATGA	1 cut(s)	61
ClaI	ATCGAT	1 cut(s)	17
Csp6I	GTAC	2 cut(s)	31, 407
CviAII	CATG	3 cut(s)	62, 349, 382
CviJI	RGCY	4 cut(s)	199, 269, 414, 435
CviKI_1	RGCY	4 cut(s)	199, 269, 414, 435
CviQI	GTAC	2 cut(s)	31, 407
DdeI	CTNAG	5 cut(s)	27, 168, 192, 275, 410
DpnI	GATC	5 cut(s)	66, 120, 296, 376, 479
DpnII	GATC	5 cut(s)	64, 118, 294, 374, 477
DraI	TTTAAA	2 cut(s)	301, 340
Eco130I	CCWWGG	1 cut(s)	264
Eco31I	GGTCTC	1 cut(s)	337
Eco32I	GATATC	1 cut(s)	346
EcoRII	CCWGG	1 cut(s)	414
EcoRV	GATATC	1 cut(s)	346
EcoT14I	CCWWGG	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	3 cut(s)	65, 352, 385
FaiI	YATR	6 cut(s)	63, 140, 309, 350, 383, 473
FatI	CATG	3 cut(s)	61, 348, 381
FblI	GTMKAC	1 cut(s)	493
Fnu4HI	GCNGC	2 cut(s)	77, 200
Fsp4HI	GCNGC	2 cut(s)	77, 200
FspBI	CTAG	1 cut(s)	270
GluI	GCNGC	2 cut(s)	77, 200
GsuI	CTGGAG	1 cut(s)	482
HapII	CCGG	1 cut(s)	497
Hin1II	CATG	3 cut(s)	65, 352, 385
HinfI	GANTC	6 cut(s)	25, 52, 181, 311, 428, 446
HpaII	CCGG	1 cut(s)	497
Hpy166II	GTNNAC	1 cut(s)	494
Hpy188I	TCNGA	4 cut(s)	51, 195, 316, 388
Hpy188III	TCNNGA	3 cut(s)	62, 372, 461
Hpy8I	GTNNAC	1 cut(s)	494
HpyAV	CCTTC	2 cut(s)	322, 418
HpyCH4III	ACNGT	1 cut(s)	105
HpyCH4IV	ACGT	1 cut(s)	507
HpyCH4V	TGCA	1 cut(s)	321
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 400
HpyF3I	CTNAG	5 cut(s)	27, 168, 192, 275, 410
HpySE526I	ACGT	1 cut(s)	507
Hsp92II	CATG	3 cut(s)	65, 352, 385
Kzo9I	GATC	5 cut(s)	64, 118, 294, 374, 477
LpnPI	CCDG	7 cut(s)	65, 125, 180, 401, 428, 446, 510
Lsp1109I	GCAGC	2 cut(s)	88, 186
LweI	GCATC	1 cut(s)	9
MaeI	CTAG	1 cut(s)	270
MaeII	ACGT	1 cut(s)	507
MaeIII	GTNAC	2 cut(s)	362, 443
MalI	GATC	5 cut(s)	66, 120, 296, 376, 479
MboI	GATC	5 cut(s)	64, 118, 294, 374, 477
MboII	GAAGA	1 cut(s)	53
MfeI	CAATTG	1 cut(s)	290
MflI	RGATCY	1 cut(s)	477
MluCI	AATT	2 cut(s)	290, 513
MlyI	GAGTC	3 cut(s)	19, 61, 440
MnlI	CCTC	2 cut(s)	189, 457
MroXI	GAANNNNTTC	1 cut(s)	45
MseI	TTAA	5 cut(s)	204, 228, 300, 339, 455
MslI	CAYNNNNRTG	2 cut(s)	60, 353
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	1 cut(s)	497
MspR9I	CCNGG	1 cut(s)	416
MunI	CAATTG	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	416
MwoI	GCNNNNNNNGC	2 cut(s)	260, 400
NdeII	GATC	5 cut(s)	64, 118, 294, 374, 477
NlaIII	CATG	3 cut(s)	65, 352, 385
NmuCI	GTSAC	2 cut(s)	362, 443
PagI	TCATGA	1 cut(s)	61
PcsI	WCGNNNNNNNCGW	1 cut(s)	437
PdmI	GAANNNNTTC	1 cut(s)	45
PfeI	GAWTC	3 cut(s)	181, 311, 428
PkrI	GCNGC	2 cut(s)	78, 201
PleI	GAGTC	3 cut(s)	19, 60, 440
PpsI	GAGTC	3 cut(s)	19, 60, 440
Psp6I	CCWGG	1 cut(s)	414
PspGI	CCWGG	1 cut(s)	414
PstNI	CAGNNNCTG	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	477
RsaI	GTAC	2 cut(s)	32, 408
RsaNI	GTAC	2 cut(s)	31, 407
RseI	CAYNNNNRTG	2 cut(s)	60, 353
SaqAI	TTAA	5 cut(s)	204, 228, 300, 339, 455
SatI	GCNGC	2 cut(s)	77, 200
Sau3AI	GATC	5 cut(s)	64, 118, 294, 374, 477
ScaI	AGTACT	1 cut(s)	408
SchI	GAGTC	3 cut(s)	19, 61, 440
ScrFI	CCNGG	1 cut(s)	416
SetI	ASST	3 cut(s)	333, 420, 510
SfaNI	GCATC	1 cut(s)	9
SmiMI	CAYNNNNRTG	2 cut(s)	60, 353
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	2 cut(s)	290, 513
SspMI	CTAG	1 cut(s)	270
StyD4I	CCNGG	1 cut(s)	414
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	105
TaiI	ACGT	1 cut(s)	510
TaqI	TCGA	3 cut(s)	17, 39, 121
TasI	AATT	2 cut(s)	290, 513
TatI	WGTACW	1 cut(s)	406
TfiI	GAWTC	3 cut(s)	181, 311, 428
Tru1I	TTAA	5 cut(s)	204, 228, 300, 339, 455
Tru9I	TTAA	5 cut(s)	204, 228, 300, 339, 455
TseFI	GTSAC	2 cut(s)	362, 443
TseI	GCWGC	2 cut(s)	76, 199
Tsp45I	GTSAC	2 cut(s)	362, 443
TspDTI	ATGAA	3 cut(s)	194, 370, 460
Vha464I	CTTAAG	1 cut(s)	203
XapI	RAATTY	1 cut(s)	513
XmiI	GTMKAC	1 cut(s)	493
XmnI	GAANNNNTTC	1 cut(s)	45
XspI	CTAG	1 cut(s)	270
ZrmI	AGTACT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.