Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002587

Physical Location & Seq

Genomic Coordinates Reverse (-)

38718462 .. 38720702

Gene Structure 2241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0317500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGTTGGTCTCTTCTTTGGAAGGGAGGAAGAACCCGTGAAGAAATCAAAGGTACAAAACTGTGTTTTCGTTTGCGTTTTACAACAACCTCCTGCAAAGCCACGGTCCCCTCCTGCAGCTCTGCAATCCCCTCCTTCTCCACCACGTGAATTACCTATAAACATTTCAGAATTGAGCTCTCCAACTAAGATTGAGCTTAGGTTTCCCCAACTTCTCCAAAAACAGGAGTTGAAGGAAGAAGAACGCAGTCCCAGTTATGCTCCATTCGAGTTATCGTCGCAGAAATACTTGATGGACAAGTGTCTTTATGACCAAGGTGGGTATTTCATTAACAATGGTAGTGAGTATTCTTTGCCTCCTCAAGTGGGAAGGAGTTGGGAAAATGGAAATCCCCATGAGGCTGTAGATTTCCGGGGTTTGACCAAAACCCAGAGGGAAAGAGAGGTTTTGGAGGGATTTAGCAAAAAGGAAAGTGATGGTGAAGAGGTTGATGTTGAGAAGGTACAGTCAAAAGAGTTCAGAAGAGTTCGCAAAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

179

Amino Acids

20.5

Weight (kDa)

6.65

Isoelectric Point (pI)

80.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18430 AT3G18430 AT3G18430
fragaria_vesca	FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_6g29301 FvH4_6g29301
malus_domestica	MD02G1005100.v1.1 MD17G1216100.v1.1
prunus_persica	Prupe.3G092200_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1
pyrus_communis	pycom02g00390 pycom15g13350 pycom17g22070
rosa_chinensis	RchiOBHm_Chr2g0085251 RchiOBHm_Chr2g0134491
rosa_laevigata	RLG00000015671 RLG00000019396 RLG00000019398
rosa_multiflora	Rmu_sc0005464.1_g000027
rosa_roxburghii	Rroxscaffold_2G00110170 Rroxscaffold_2G00155520
rosa_rugosa	Rorug01G0458600 Rorug01G0458600 Rorug02G0317500 Rorug02G0317600 Rorug02G0317700
rosa_samantha	Rh2AG007300 Rh2AG375600 Rh2BG007900 Rh2CG008700 Rh2CG354100 Rh2DG009000 Rh2DG393200
rosa_wichuraiana	Rw2G000690 Rw2G030150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcvI	CACGTG	1 cut(s)	146
AdeI	CACNNNGTG	1 cut(s)	146
AfaI	GTAC	2 cut(s)	54, 504
AfiI	CCNNNNNNNGG	2 cut(s)	223, 365
AgsI	TTSAA	1 cut(s)	232
AluBI	AGCT	3 cut(s)	119, 177, 196
AluI	AGCT	3 cut(s)	119, 177, 196
Alw21I	GWGCWC	1 cut(s)	179
Alw26I	GTCTC	1 cut(s)	14
ApeKI	GCWGC	1 cut(s)	116
ArsI	GACNNNNNNTTYG	2 cut(s)	89, 121
AspS9I	GGNCC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	413
AsuHPI	GGTGA	1 cut(s)	491
AvaII	GGWCC	1 cut(s)	105
BanII	GRGCYC	1 cut(s)	179
BbrPI	CACGTG	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	2 cut(s)	286, 470
BcnI	CCSGG	1 cut(s)	413
BcoDI	GTCTC	1 cut(s)	14
BfmI	CTRYAG	2 cut(s)	114, 402
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	1 cut(s)	413
Bme18I	GGWCC	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	1 cut(s)	107
BmrFI	CCNGG	1 cut(s)	413
BmrI	ACTGGG	1 cut(s)	246
BmuI	ACTGGG	1 cut(s)	246
BoxI	GACNNNNGTC	1 cut(s)	300
Bpu10I	CCTNAGC	1 cut(s)	197
BpuEI	CTTGAG	1 cut(s)	345
BpuMI	CCSGG	1 cut(s)	413
BsaAI	YACGTR	1 cut(s)	146
BsaI	GGTCTC	1 cut(s)	14
BsaJI	CCNNGG	3 cut(s)	101, 313, 412
Bsc4I	CCNNNNNNNGG	2 cut(s)	223, 365
Bse1I	ACTGG	1 cut(s)	252
BseDI	CCNNGG	3 cut(s)	101, 313, 412
BseLI	CCNNNNNNNGG	2 cut(s)	223, 365
BseNI	ACTGG	1 cut(s)	252
BseRI	GAGGAG	1 cut(s)	348
BseXI	GCAGC	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	412
BslFI	GGGAC	2 cut(s)	91, 234
BslI	CCNNNNNNNGG	2 cut(s)	223, 365
BsmAI	GTCTC	1 cut(s)	14
BsmFI	GGGAC	2 cut(s)	91, 234
Bso31I	GGTCTC	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	179
BspLI	GGNNCC	1 cut(s)	107
BspMAI	CTGCAG	1 cut(s)	118
BspTNI	GGTCTC	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	252
BssECI	CCNNGG	3 cut(s)	101, 313, 412
BssT1I	CCWWGG	1 cut(s)	313
Bst4CI	ACNGT	3 cut(s)	62, 105, 507
Bst6I	CTCTTC	3 cut(s)	17, 477, 517
BstBAI	YACGTR	1 cut(s)	146
BstDEI	CTNAG	2 cut(s)	186, 197
BstDSI	CCRYGG	1 cut(s)	101
BstMAI	GTCTC	1 cut(s)	14
BstPAI	GACNNNNGTC	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	411
BstSFI	CTRYAG	2 cut(s)	114, 402
BstV1I	GCAGC	1 cut(s)	128
BtgI	CCRYGG	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	105
Csp6I	GTAC	2 cut(s)	53, 503
CviAII	CATG	1 cut(s)	395
CviJI	RGCY	5 cut(s)	100, 119, 177, 196, 401
CviKI_1	RGCY	5 cut(s)	100, 119, 177, 196, 401
CviQI	GTAC	2 cut(s)	53, 503
DdeI	CTNAG	2 cut(s)	186, 197
DraIII	CACNNNGTG	1 cut(s)	146
Eam1104I	CTCTTC	3 cut(s)	17, 477, 517
EarI	CTCTTC	3 cut(s)	17, 477, 517
Ecl136II	GAGCTC	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	179
Eco31I	GGTCTC	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	105
Eco53kI	GAGCTC	1 cut(s)	177
Eco72I	CACGTG	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	313
EcoT38I	GRGCYC	1 cut(s)	179
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	1 cut(s)	398
FaiI	YATR	5 cut(s)	158, 258, 309, 396, 538
FaqI	GGGAC	2 cut(s)	91, 234
FatI	CATG	1 cut(s)	394
Fnu4HI	GCNGC	1 cut(s)	117
FriOI	GRGCYC	1 cut(s)	179
Fsp4HI	GCNGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	117
HapII	CCGG	1 cut(s)	412
Hin1II	CATG	1 cut(s)	398
HpaII	CCGG	1 cut(s)	412
HphI	GGTGA	1 cut(s)	491
Hpy188I	TCNGA	2 cut(s)	169, 521
Hpy99I	CGWCG	1 cut(s)	280
HpyAV	CCTTC	5 cut(s)	15, 144, 226, 363, 493
HpyCH4III	ACNGT	3 cut(s)	62, 105, 507
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	3 cut(s)	95, 116, 124
HpyF3I	CTNAG	2 cut(s)	186, 197
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	1 cut(s)	398
LmnI	GCTCC	1 cut(s)	265
LpnPI	CCDG	6 cut(s)	105, 126, 209, 265, 425, 443
Lsp1109I	GCAGC	1 cut(s)	128
MaeII	ACGT	1 cut(s)	145
MboII	GAAGA	7 cut(s)	4, 41, 52, 248, 251, 494, 534
MhlI	GDGCHC	1 cut(s)	179
MluCI	AATT	2 cut(s)	149, 170
MmeI	TCCRAC	1 cut(s)	206
MseI	TTAA	1 cut(s)	330
MspI	CCGG	1 cut(s)	412
MspR9I	CCNGG	1 cut(s)	413
NciI	CCSGG	1 cut(s)	413
NlaIII	CATG	1 cut(s)	398
NlaIV	GGNNCC	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	118
PmaCI	CACGTG	1 cut(s)	146
PmlI	CACGTG	1 cut(s)	146
Ppu21I	YACGTR	1 cut(s)	146
PshAI	GACNNNNGTC	1 cut(s)	300
Psp124BI	GAGCTC	1 cut(s)	179
PspCI	CACGTG	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	107
PspPI	GGNCC	1 cut(s)	105
PstI	CTGCAG	1 cut(s)	118
RsaI	GTAC	2 cut(s)	54, 504
RsaNI	GTAC	2 cut(s)	53, 503
SacI	GAGCTC	1 cut(s)	179
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	1 cut(s)	117
Sau96I	GGNCC	1 cut(s)	105
ScrFI	CCNGG	1 cut(s)	413
SduI	GDGCHC	1 cut(s)	179
SfcI	CTRYAG	2 cut(s)	114, 402
SinI	GGWCC	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	360
SmoI	CTYRAG	1 cut(s)	360
Sse9I	AATT	2 cut(s)	149, 170
SstI	GAGCTC	1 cut(s)	179
StyD4I	CCNGG	1 cut(s)	411
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	3 cut(s)	62, 105, 507
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	1 cut(s)	267
TasI	AATT	2 cut(s)	149, 170
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TseI	GCWGC	1 cut(s)	116
TspDTI	ATGAA	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.