Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002587

Physical Location & Seq

Genomic Coordinates Reverse (-)

331100 .. 334853

Gene Structure 3754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g00630.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGGCAACACATCGTCCATGCTCACTCAGTACGACATCGAAGAAGTTAAGCAACACTGCAACAACACATTTTCCCAACAGGAAATAGTTTCTCTGTATCAAAGGTTCTGTCAGCTAGATCGCAGCGGCGGAGGTTTCATCTCCGCCGACGAGTTCTTGTCCGTGCCTGAGTTTGCCGTCAATCCTCTCTCTCAGAGATTGCTGAAGGTCTTGGATGGATTGAACTTCAAGGAATTTGTAGCATTCTTGTCAGCATTCAGTTCTCGCGCAAGCCCGCAGCAAAAAATCGAGTTTATCTTCAAGGTCTATGATGCCGATAACAATGGGAAAGTTACGTTCAATGATATGCTGGATGTTTTACGGGATTTGACAGGACAGTTCATATCTGAGCAACAGAGGGAGCAAGTATTGACCCATGTCCTCGAGGAATCAGGATATTCAAGGGATTCTTCATTAACCGTATCTGACTTTGTGAAGATTCTTGGCAACTCTGCTTTGAAGATGGAGGTTGAGGTTCCTGTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_7

Protein Analysis

176

Amino Acids

19.78

Weight (kDa)

4.63

Isoelectric Point (pI)

41.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	94 - 160	2.4e-07	EF-hand domain pair
EF-hand_1	PF00036	96 - 122	4.6e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18430 AT3G18430 AT3G18430
fragaria_vesca	FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_6g29301 FvH4_6g29301
malus_domestica	MD02G1005100.v1.1 MD17G1216100.v1.1
prunus_persica	Prupe.3G092200_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1
pyrus_communis	pycom02g00390 pycom15g13350 pycom17g22070
rosa_chinensis	RchiOBHm_Chr2g0085251 RchiOBHm_Chr2g0134491
rosa_laevigata	RLG00000015671 RLG00000019396 RLG00000019398
rosa_multiflora	Rmu_sc0005464.1_g000027
rosa_roxburghii	Rroxscaffold_2G00110170 Rroxscaffold_2G00155520
rosa_rugosa	Rorug01G0458600 Rorug01G0458600 Rorug02G0317500 Rorug02G0317600 Rorug02G0317700
rosa_samantha	Rh2AG007300 Rh2AG375600 Rh2BG007900 Rh2CG008700 Rh2CG354100 Rh2DG009000 Rh2DG393200
rosa_wichuraiana	Rw2G000690 Rw2G030150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	422
AccII	CGCG	1 cut(s)	267
AciI	CCGC	4 cut(s)	126, 129, 144, 275
AcsI	RAATTY	1 cut(s)	233
AcuI	CTGAAG	1 cut(s)	224
AfaI	GTAC	1 cut(s)	32
AgsI	TTSAA	6 cut(s)	223, 229, 301, 340, 441, 499
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
Ama87I	CYCGRG	1 cut(s)	422
ApeKI	GCWGC	2 cut(s)	123, 277
ApoI	RAATTY	1 cut(s)	233
ArsI	GACNNNNNNTTYG	2 cut(s)	94, 126
AspLEI	GCGC	1 cut(s)	269
AvaI	CYCGRG	1 cut(s)	422
BbvI	GCAGC	2 cut(s)	135, 289
BccI	CCATC	2 cut(s)	209, 496
BceAI	ACGGC	1 cut(s)	161
BfaI	CTAG	1 cut(s)	116
BisI	GCNGC	3 cut(s)	124, 127, 278
BlsI	GCNGC	3 cut(s)	125, 128, 279
BmeT110I	CYCGRG	1 cut(s)	422
BmiI	GGNNCC	1 cut(s)	516
BmsI	GCATC	1 cut(s)	301
BoxI	GACNNNNGTC	1 cut(s)	416
BseGI	GGATG	2 cut(s)	220, 358
BseMII	CTCAG	4 cut(s)	41, 159, 206, 378
BseXI	GCAGC	2 cut(s)	135, 289
Bsh1236I	CGCG	1 cut(s)	267
BsiHKCI	CYCGRG	1 cut(s)	422
BsmI	GAATGC	2 cut(s)	242, 254
BsoBI	CYCGRG	1 cut(s)	422
Bsp143I	GATC	1 cut(s)	118
BspACI	CCGC	4 cut(s)	126, 129, 144, 275
BspCNI	CTCAG	4 cut(s)	40, 160, 205, 379
BspFNI	CGCG	1 cut(s)	267
BspLI	GGNNCC	1 cut(s)	516
BssMI	GATC	1 cut(s)	118
Bst4CI	ACNGT	2 cut(s)	378, 460
BstC8I	GCNNGC	2 cut(s)	271, 275
BstDEI	CTNAG	4 cut(s)	27, 168, 192, 387
BstF5I	GGATG	2 cut(s)	220, 358
BstFNI	CGCG	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	118
BstPAI	GACNNNNGTC	1 cut(s)	416
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	2 cut(s)	135, 289
BtsCI	GGATG	2 cut(s)	220, 358
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	2 cut(s)	271, 275
CfoI	GCGC	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	2 cut(s)	19, 416
CviJI	RGCY	2 cut(s)	115, 273
CviKI_1	RGCY	2 cut(s)	115, 273
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	4 cut(s)	27, 168, 192, 387
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
EciI	GGCGGA	2 cut(s)	133, 144
Eco57I	CTGAAG	1 cut(s)	224
Eco88I	CYCGRG	1 cut(s)	422
FaeI	CATG	2 cut(s)	22, 419
FaiI	YATR	5 cut(s)	20, 309, 347, 383, 417
FalI	AAGNNNNNCTT	2 cut(s)	433, 465
FatI	CATG	2 cut(s)	18, 415
FauI	CCCGC	1 cut(s)	282
Fnu4HI	GCNGC	3 cut(s)	124, 127, 278
FokI	GGATG	2 cut(s)	227, 365
Fsp4HI	GCNGC	3 cut(s)	124, 127, 278
FspBI	CTAG	1 cut(s)	116
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	3 cut(s)	124, 127, 278
HhaI	GCGC	1 cut(s)	269
Hin1II	CATG	2 cut(s)	22, 419
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HinfI	GANTC	3 cut(s)	428, 446, 478
Hpy188I	TCNGA	3 cut(s)	195, 388, 466
Hpy188III	TCNNGA	1 cut(s)	432
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	2 cut(s)	378, 460
HpyCH4IV	ACGT	1 cut(s)	335
HpyCH4V	TGCA	1 cut(s)	60
HpyF3I	CTNAG	4 cut(s)	27, 168, 192, 387
HpySE526I	ACGT	1 cut(s)	335
Hsp92II	CATG	2 cut(s)	22, 419
HspAI	GCGC	1 cut(s)	267
Kzo9I	GATC	1 cut(s)	118
LmnI	GCTCC	1 cut(s)	400
LpnPI	CCDG	5 cut(s)	65, 180, 335, 357, 417
Lsp1109I	GCAGC	2 cut(s)	135, 289
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	1 cut(s)	335
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	5 cut(s)	53, 289, 441, 487, 511
MluCI	AATT	1 cut(s)	233
MnlI	CCTC	7 cut(s)	125, 195, 390, 418, 431, 499, 505
MseI	TTAA	2 cut(s)	48, 455
MspA1I	CMGCKG	1 cut(s)	126
Mva1269I	GAATGC	2 cut(s)	242, 254
MvnI	CGCG	1 cut(s)	267
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	2 cut(s)	22, 419
NlaIV	GGNNCC	1 cut(s)	516
PaeR7I	CTCGAG	1 cut(s)	422
PctI	GAATGC	2 cut(s)	242, 254
PfeI	GAWTC	3 cut(s)	428, 446, 478
PkrI	GCNGC	3 cut(s)	125, 128, 279
PshAI	GACNNNNGTC	1 cut(s)	416
PspN4I	GGNNCC	1 cut(s)	516
PspXI	VCTCGAGB	1 cut(s)	422
PsrI	GAACNNNNNNTAC	2 cut(s)	89, 121
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SaqAI	TTAA	2 cut(s)	48, 455
SatI	GCNGC	3 cut(s)	124, 127, 278
Sau3AI	GATC	1 cut(s)	118
SetI	ASST	8 cut(s)	107, 117, 136, 210, 306, 338, 510, 516
SfaNI	GCATC	1 cut(s)	301
Sfr274I	CTCGAG	1 cut(s)	422
SlaI	CTCGAG	1 cut(s)	422
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	1 cut(s)	233
SsiI	CCGC	4 cut(s)	126, 129, 144, 275
SspMI	CTAG	1 cut(s)	116
TaaI	ACNGT	2 cut(s)	378, 460
TaiI	ACGT	1 cut(s)	338
TaqI	TCGA	3 cut(s)	39, 288, 423
TasI	AATT	1 cut(s)	233
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	3 cut(s)	428, 446, 478
Tru1I	TTAA	2 cut(s)	48, 455
Tru9I	TTAA	2 cut(s)	48, 455
TscAI	CASTG	1 cut(s)	62
TseI	GCWGC	2 cut(s)	123, 277
TspDTI	ATGAA	3 cut(s)	127, 370, 441
TspGWI	ACGGA	1 cut(s)	151
TspRI	CASTG	1 cut(s)	62
XapI	RAATTY	1 cut(s)	233
XhoI	CTCGAG	1 cut(s)	422
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.