Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002587

Physical Location & Seq

Genomic Coordinates Reverse (-)

564526 .. 567623

Gene Structure 3098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG007900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGGCAACACATCCTCCATGCTCACTCAGTACGACATCGAAGAAGTTCAGCAACACTGCAATCACACATTTTCGCAGCAGGAGATAGTTTCTCTGTACAAGAGGTTCTGTCAGCTCGATCGCAGCGGCGGAGGTTTCATCTCCGCCGACGAGTTCTTGTCCGTACCTGAATTCGCAGTCAATCCTCTCTCTCAGAGATTGCTGAAGATACTGGATGGATTGAACTTTAAGGAATTTGTAGCATTCTTGTCAGCGTTCAGTTCTCGTGCAAGCTTGCAGCAAAAAATTGAGTTTATCTTCAAGGTATATGATTCTGACCACAATGGGAAAGTCACGTTCAATGACATGCTGGATGTTTTACGGGATTTGACGGGGCAGTTCATATCCGAGCAACAGAGGGAGCAAGTATTGACCCATGTCCTCGAGGAATCAGGCTATACAAAGGATTCTTCACTAACCATATCTGACTTTGTGAAGACTCTTGGAAACTCAGCTTTGAAGATGGAGGTTGAGGTTCCTGTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_7

Protein Analysis

175

Amino Acids

19.86

Weight (kDa)

4.79

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	94 - 159	6.2e-08	EF-hand domain pair
EF-hand_1	PF00036	96 - 122	8.1e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18430 AT3G18430 AT3G18430
fragaria_vesca	FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_6g29301 FvH4_6g29301
malus_domestica	MD02G1005100.v1.1 MD17G1216100.v1.1
prunus_persica	Prupe.3G092200_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1
pyrus_communis	pycom02g00390 pycom15g13350 pycom17g22070
rosa_chinensis	RchiOBHm_Chr2g0085251 RchiOBHm_Chr2g0134491
rosa_laevigata	RLG00000015671 RLG00000019396 RLG00000019398
rosa_multiflora	Rmu_sc0005464.1_g000027
rosa_roxburghii	Rroxscaffold_2G00110170 Rroxscaffold_2G00155520
rosa_rugosa	Rorug01G0458600 Rorug01G0458600 Rorug02G0317500 Rorug02G0317600 Rorug02G0317700
rosa_samantha	Rh2AG007300 Rh2AG375600 Rh2BG007900 Rh2CG008700 Rh2CG354100 Rh2DG009000 Rh2DG393200
rosa_wichuraiana	Rw2G000690 Rw2G030150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	422
AciI	CCGC	3 cut(s)	126, 129, 144
AcsI	RAATTY	2 cut(s)	170, 233
AcuI	CTGAAG	1 cut(s)	224
AfaI	GTAC	3 cut(s)	32, 98, 165
AgsI	TTSAA	4 cut(s)	223, 301, 340, 499
AluBI	AGCT	3 cut(s)	115, 273, 494
AluI	AGCT	3 cut(s)	115, 273, 494
Ama87I	CYCGRG	1 cut(s)	422
ApeKI	GCWGC	3 cut(s)	76, 123, 277
ApoI	RAATTY	2 cut(s)	170, 233
Asp700I	GAANNNNTTC	1 cut(s)	45
AvaI	CYCGRG	1 cut(s)	422
BauI	CACGAG	1 cut(s)	264
BbsI	GAAGAC	1 cut(s)	482
BbvI	GCAGC	3 cut(s)	88, 135, 289
BccI	CCATC	2 cut(s)	209, 496
BisI	GCNGC	4 cut(s)	77, 124, 127, 278
BlsI	GCNGC	4 cut(s)	78, 125, 128, 279
BmeT110I	CYCGRG	1 cut(s)	422
BmiI	GGNNCC	1 cut(s)	516
BoxI	GACNNNNGTC	1 cut(s)	416
BpiI	GAAGAC	1 cut(s)	482
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	216
BseGI	GGATG	3 cut(s)	11, 220, 358
BseMII	CTCAG	3 cut(s)	41, 206, 504
BseNI	ACTGG	1 cut(s)	216
BseXI	GCAGC	3 cut(s)	88, 135, 289
Bsh1285I	CGRYCG	1 cut(s)	121
BsiEI	CGRYCG	1 cut(s)	121
BsiHKCI	CYCGRG	1 cut(s)	422
BsmI	GAATGC	1 cut(s)	242
BsoBI	CYCGRG	1 cut(s)	422
Bsp1407I	TGTACA	1 cut(s)	96
Bsp143I	GATC	1 cut(s)	118
BspACI	CCGC	3 cut(s)	126, 129, 144
BspCNI	CTCAG	3 cut(s)	40, 205, 503
BspLI	GGNNCC	1 cut(s)	516
BsrGI	TGTACA	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	216
BssMI	GATC	1 cut(s)	118
BssSI	CACGAG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	264
BstAUI	TGTACA	1 cut(s)	96
BstC8I	GCNNGC	2 cut(s)	271, 275
BstDEI	CTNAG	3 cut(s)	27, 192, 490
BstF5I	GGATG	3 cut(s)	11, 220, 358
BstKTI	GATC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	118
BstMCI	CGRYCG	1 cut(s)	121
BstNSI	RCATGY	1 cut(s)	349
BstPAI	GACNNNNGTC	1 cut(s)	416
BstV1I	GCAGC	3 cut(s)	88, 135, 289
BstV2I	GAAGAC	1 cut(s)	482
BtsCI	GGATG	3 cut(s)	11, 220, 358
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	2 cut(s)	271, 275
Csp6I	GTAC	3 cut(s)	31, 97, 164
CviAII	CATG	3 cut(s)	19, 346, 416
CviJI	RGCY	4 cut(s)	115, 273, 435, 494
CviKI_1	RGCY	4 cut(s)	115, 273, 435, 494
CviQI	GTAC	3 cut(s)	31, 97, 164
DdeI	CTNAG	3 cut(s)	27, 192, 490
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
EciI	GGCGGA	2 cut(s)	133, 144
Eco57I	CTGAAG	1 cut(s)	224
Eco88I	CYCGRG	1 cut(s)	422
EcoRI	GAATTC	1 cut(s)	170
FaeI	CATG	3 cut(s)	22, 349, 419
FaiI	YATR	8 cut(s)	20, 307, 309, 347, 383, 417, 438, 461
FatI	CATG	3 cut(s)	18, 345, 415
Fnu4HI	GCNGC	4 cut(s)	77, 124, 127, 278
FokI	GGATG	2 cut(s)	227, 365
Fsp4HI	GCNGC	4 cut(s)	77, 124, 127, 278
GluI	GCNGC	4 cut(s)	77, 124, 127, 278
Hin1II	CATG	3 cut(s)	22, 349, 419
HindIII	AAGCTT	1 cut(s)	271
HinfI	GANTC	4 cut(s)	311, 428, 446, 478
Hpy188I	TCNGA	4 cut(s)	195, 316, 388, 466
Hpy99I	CGWCG	1 cut(s)	152
HpyCH4IV	ACGT	1 cut(s)	335
HpyCH4V	TGCA	3 cut(s)	60, 269, 277
HpyF3I	CTNAG	3 cut(s)	27, 192, 490
HpySE526I	ACGT	1 cut(s)	335
Hsp92II	CATG	3 cut(s)	22, 349, 419
Kzo9I	GATC	1 cut(s)	118
LmnI	GCTCC	1 cut(s)	400
LpnPI	CCDG	5 cut(s)	65, 180, 197, 335, 417
Lsp1109I	GCAGC	3 cut(s)	88, 135, 289
MaeII	ACGT	1 cut(s)	335
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	6 cut(s)	53, 217, 289, 441, 487, 511
MluCI	AATT	3 cut(s)	170, 233, 285
MlyI	GAGTC	1 cut(s)	472
MnlI	CCTC	9 cut(s)	25, 96, 125, 195, 390, 418, 431, 499, 505
MroXI	GAANNNNTTC	1 cut(s)	45
MseI	TTAA	2 cut(s)	228, 526
MspA1I	CMGCKG	1 cut(s)	126
Mva1269I	GAATGC	1 cut(s)	242
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	3 cut(s)	22, 349, 419
NlaIV	GGNNCC	1 cut(s)	516
NmuCI	GTSAC	1 cut(s)	331
NspI	RCATGY	1 cut(s)	349
PaeR7I	CTCGAG	1 cut(s)	422
PctI	GAATGC	1 cut(s)	242
PdmI	GAANNNNTTC	1 cut(s)	45
PfeI	GAWTC	3 cut(s)	311, 428, 446
PkrI	GCNGC	4 cut(s)	78, 125, 128, 279
Ple19I	CGATCG	1 cut(s)	121
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
PshAI	GACNNNNGTC	1 cut(s)	416
PspN4I	GGNNCC	1 cut(s)	516
PspXI	VCTCGAGB	1 cut(s)	422
PsrI	GAACNNNNNNTAC	2 cut(s)	89, 121
PvuI	CGATCG	1 cut(s)	121
RsaI	GTAC	3 cut(s)	32, 98, 165
RsaNI	GTAC	3 cut(s)	31, 97, 164
SaqAI	TTAA	2 cut(s)	228, 526
SatI	GCNGC	4 cut(s)	77, 124, 127, 278
Sau3AI	GATC	1 cut(s)	118
SchI	GAGTC	1 cut(s)	472
Sfr274I	CTCGAG	1 cut(s)	422
SlaI	CTCGAG	1 cut(s)	422
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	3 cut(s)	170, 233, 285
SsiI	CCGC	3 cut(s)	126, 129, 144
TaiI	ACGT	1 cut(s)	338
TaqI	TCGA	3 cut(s)	39, 117, 423
TasI	AATT	3 cut(s)	170, 233, 285
TatI	WGTACW	1 cut(s)	96
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	3 cut(s)	311, 428, 446
Tru1I	TTAA	2 cut(s)	228, 526
Tru9I	TTAA	2 cut(s)	228, 526
TscAI	CASTG	1 cut(s)	62
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	3 cut(s)	76, 123, 277
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	2 cut(s)	127, 370
TspGWI	ACGGA	1 cut(s)	151
TspRI	CASTG	1 cut(s)	62
XapI	RAATTY	2 cut(s)	170, 233
XceI	RCATGY	1 cut(s)	349
XhoI	CTCGAG	1 cut(s)	422
XmnI	GAANNNNTTC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.