Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002587

Physical Location & Seq

Genomic Coordinates Reverse (-)

9124558 .. 9126782

Gene Structure 2225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g13350.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGGCAACACATCCTCGATGCTCACACAGTACGATATCGAAGAAGTCCAGGAGCACTGTAACAACACATTTTCGCAGCAGGAGATAGTTTCTCTGTACCAGCGGTTCTGCCAGCTCGATCGCAGCGGCGGAGGTTTCATCTCCGCCGATGAGTTCTTGTCCGTTCCCGAATTCGCCGTCAATCCTCTCTCTCAGAGATTGCTGAAGATATTGGATGGATTGAACTTTAAGGAATTCGTATTATTCTTATCAGCATTCAGTTCTCGTGCAAGCTTGCAGCAGAAAATAGAGTTTATTTTTAAGGTATATGATTCAGACGGCAATGGGAAAGTCGCATTCAGCGACATGTTGGATGTTTTGCGGGATTTGACGGGGCAGTTCATATCTGAGCAACAGAGGGAGCAAGTATTGACGCATGTCCTTGAGGAATCAGGCTACACAAGGGATTCATTGTTAAGCATATCGGACTTTGTGAAGACTCTTGGCAACTCTGATTTGAAGATGGAGGTCGAGGTTCCCGTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_7

Protein Analysis

176

Amino Acids

19.83

Weight (kDa)

4.46

Isoelectric Point (pI)

38.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18430 AT3G18430 AT3G18430
fragaria_vesca	FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_6g29301 FvH4_6g29301
malus_domestica	MD02G1005100.v1.1 MD17G1216100.v1.1
prunus_persica	Prupe.3G092200_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1
pyrus_communis	pycom02g00390 pycom15g13350 pycom17g22070
rosa_chinensis	RchiOBHm_Chr2g0085251 RchiOBHm_Chr2g0134491
rosa_laevigata	RLG00000015671 RLG00000019396 RLG00000019398
rosa_multiflora	Rmu_sc0005464.1_g000027
rosa_roxburghii	Rroxscaffold_2G00110170 Rroxscaffold_2G00155520
rosa_rugosa	Rorug01G0458600 Rorug01G0458600 Rorug02G0317500 Rorug02G0317600 Rorug02G0317700
rosa_samantha	Rh2AG007300 Rh2AG375600 Rh2BG007900 Rh2CG008700 Rh2CG354100 Rh2DG009000 Rh2DG393200
rosa_wichuraiana	Rw2G000690 Rw2G030150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	103, 126, 129, 144, 361
AcsI	RAATTY	2 cut(s)	170, 233
AcuI	CTGAAG	1 cut(s)	224
AfaI	GTAC	2 cut(s)	32, 98
AflIII	ACRYGT	1 cut(s)	345
AgsI	TTSAA	2 cut(s)	223, 499
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	2 cut(s)	115, 273
AluI	AGCT	2 cut(s)	115, 273
Alw21I	GWGCWC	1 cut(s)	57
ApeKI	GCWGC	3 cut(s)	76, 123, 277
ApoI	RAATTY	2 cut(s)	170, 233
ArsI	GACNNNNNNTTYG	2 cut(s)	162, 194
BauI	CACGAG	1 cut(s)	264
BbsI	GAAGAC	1 cut(s)	482
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	3 cut(s)	88, 135, 289
BccI	CCATC	2 cut(s)	209, 496
BceAI	ACGGC	2 cut(s)	161, 334
BciT130I	CCWGG	1 cut(s)	50
BisI	GCNGC	4 cut(s)	77, 124, 127, 278
BlsI	GCNGC	4 cut(s)	78, 125, 128, 279
Bme1390I	CCNGG	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	516
BmrFI	CCNGG	1 cut(s)	50
BmsI	GCATC	1 cut(s)	9
BoxI	GACNNNNGTC	1 cut(s)	416
BpiI	GAAGAC	1 cut(s)	482
BpuEI	CTTGAG	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	519
Bse3DI	GCAATG	1 cut(s)	328
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	519
BseGI	GGATG	3 cut(s)	11, 220, 358
BseMI	GCAATG	1 cut(s)	328
BseMII	CTCAG	2 cut(s)	206, 378
BseXI	GCAGC	3 cut(s)	88, 135, 289
Bsh1285I	CGRYCG	1 cut(s)	121
BsiEI	CGRYCG	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	57
BsmI	GAATGC	2 cut(s)	254, 335
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	1 cut(s)	118
BspACI	CCGC	5 cut(s)	103, 126, 129, 144, 361
BspCNI	CTCAG	2 cut(s)	205, 379
BspLI	GGNNCC	1 cut(s)	516
BsrDI	GCAATG	1 cut(s)	328
BssECI	CCNNGG	1 cut(s)	519
BssMI	GATC	1 cut(s)	118
BssSI	CACGAG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	2 cut(s)	30, 59
BstC8I	GCNNGC	3 cut(s)	113, 271, 275
BstDEI	CTNAG	2 cut(s)	192, 387
BstDSI	CCRYGG	1 cut(s)	519
BstF5I	GGATG	3 cut(s)	11, 220, 358
BstKTI	GATC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	118
BstMCI	CGRYCG	1 cut(s)	121
BstNI	CCWGG	1 cut(s)	50
BstNSI	RCATGY	2 cut(s)	349, 419
BstPAI	GACNNNNGTC	1 cut(s)	416
BstSCI	CCNGG	1 cut(s)	48
BstV1I	GCAGC	3 cut(s)	88, 135, 289
BstV2I	GAAGAC	1 cut(s)	482
BtgI	CCRYGG	1 cut(s)	519
BtsCI	GGATG	3 cut(s)	11, 220, 358
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	3 cut(s)	113, 271, 275
CseI	GACGC	1 cut(s)	421
Csp6I	GTAC	2 cut(s)	31, 97
CviAII	CATG	2 cut(s)	346, 416
CviJI	RGCY	3 cut(s)	115, 273, 435
CviKI_1	RGCY	3 cut(s)	115, 273, 435
CviQI	GTAC	2 cut(s)	31, 97
DdeI	CTNAG	2 cut(s)	192, 387
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
EciI	GGCGGA	2 cut(s)	133, 144
Eco32I	GATATC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	224
EcoRI	GAATTC	2 cut(s)	170, 233
EcoRII	CCWGG	1 cut(s)	48
EcoRV	GATATC	1 cut(s)	37
FaeI	CATG	2 cut(s)	349, 419
FaiI	YATR	6 cut(s)	307, 309, 347, 383, 417, 461
FatI	CATG	2 cut(s)	345, 415
FauI	CCCGC	1 cut(s)	354
Fnu4HI	GCNGC	4 cut(s)	77, 124, 127, 278
FokI	GGATG	2 cut(s)	227, 365
Fsp4HI	GCNGC	4 cut(s)	77, 124, 127, 278
GluI	GCNGC	4 cut(s)	77, 124, 127, 278
HgaI	GACGC	1 cut(s)	421
Hin1II	CATG	2 cut(s)	349, 419
HindIII	AAGCTT	1 cut(s)	271
HinfI	GANTC	4 cut(s)	311, 428, 446, 478
Hpy188I	TCNGA	5 cut(s)	195, 316, 388, 466, 493
Hpy188III	TCNNGA	1 cut(s)	167
HpyCH4III	ACNGT	2 cut(s)	30, 59
HpyCH4V	TGCA	2 cut(s)	269, 277
HpyF3I	CTNAG	2 cut(s)	192, 387
Hsp92II	CATG	2 cut(s)	349, 419
Kzo9I	GATC	1 cut(s)	118
LmnI	GCTCC	2 cut(s)	52, 400
LpnPI	CCDG	6 cut(s)	35, 62, 65, 113, 125, 417
Lsp1109I	GCAGC	3 cut(s)	88, 135, 289
LweI	GCATC	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	4 cut(s)	53, 217, 487, 511
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	2 cut(s)	170, 233
MlyI	GAGTC	1 cut(s)	472
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	7 cut(s)	25, 125, 195, 390, 418, 499, 505
MseI	TTAA	3 cut(s)	228, 300, 455
MspA1I	CMGCKG	2 cut(s)	103, 126
MspR9I	CCNGG	1 cut(s)	50
Mva1269I	GAATGC	2 cut(s)	254, 335
MvaI	CCWGG	1 cut(s)	50
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	2 cut(s)	349, 419
NlaIV	GGNNCC	1 cut(s)	516
NspI	RCATGY	2 cut(s)	349, 419
PciI	ACATGT	1 cut(s)	345
PcsI	WCGNNNNNNNCGW	2 cut(s)	339, 516
PctI	GAATGC	2 cut(s)	254, 335
PfeI	GAWTC	3 cut(s)	311, 428, 446
PfoI	TCCNGGA	1 cut(s)	48
PkrI	GCNGC	4 cut(s)	78, 125, 128, 279
Ple19I	CGATCG	1 cut(s)	121
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
PscI	ACATGT	1 cut(s)	345
PshAI	GACNNNNGTC	1 cut(s)	416
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	516
PsrI	GAACNNNNNNTAC	2 cut(s)	89, 121
PvuI	CGATCG	1 cut(s)	121
RsaI	GTAC	2 cut(s)	32, 98
RsaNI	GTAC	2 cut(s)	31, 97
SaqAI	TTAA	3 cut(s)	228, 300, 455
SatI	GCNGC	4 cut(s)	77, 124, 127, 278
Sau3AI	GATC	1 cut(s)	118
SchI	GAGTC	1 cut(s)	472
ScrFI	CCNGG	1 cut(s)	50
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	6 cut(s)	117, 136, 275, 306, 510, 516
SfaNI	GCATC	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	2 cut(s)	170, 233
SsiI	CCGC	5 cut(s)	103, 126, 129, 144, 361
StyD4I	CCNGG	1 cut(s)	48
TaaI	ACNGT	2 cut(s)	30, 59
TaqI	TCGA	4 cut(s)	17, 39, 117, 510
TasI	AATT	2 cut(s)	170, 233
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	3 cut(s)	311, 428, 446
Tru1I	TTAA	3 cut(s)	228, 300, 455
Tru9I	TTAA	3 cut(s)	228, 300, 455
TscAI	CASTG	1 cut(s)	62
TseI	GCWGC	3 cut(s)	76, 123, 277
TspDTI	ATGAA	3 cut(s)	127, 370, 438
TspGWI	ACGGA	1 cut(s)	151
TspRI	CASTG	1 cut(s)	62
XapI	RAATTY	2 cut(s)	170, 233
XceI	RCATGY	2 cut(s)	349, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.