Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002587

Physical Location & Seq

Genomic Coordinates Reverse (-)

38745150 .. 38750064

Gene Structure 4915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0317600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGTACCCGCGCTTTGCTGCGGGGATTTGTTGTTGTCGAAGGGAGTAGAGCACAGGAAGGCGATAGAAGCTATTAAATCGTTGGAATCATCACGTGAAGAAGGGAAGAGATTGGTTTCTGTTCGGGATATTGTTCATTGTGCGATTTCCGATTTCAGTAATTGGTTGGAAGAGCTTGGAGGGATATTGTTTGTTGTGGAGTTTGCGATTTCAGTAATTGGTTGGAAGAGGTTGGAGGTTCTATGCAAAGGAGACTCTCAATTGTTTTTCTGCCATTGTTCCTGTATCTGTTATTTGCTATTGGTTTCGTGTTCTATTGTTATTCAGATATCAGGAACAGTGAGCTGTCAAAATCTCCAAGATTGTAAGTATTTCTGTTCAGAAGATCCTCAGATGAATCAGGTGATGATGAGTTGTGATGAGAAACTGAAGCATAACCTTATGCTGATGGAGCGACAGAGAGAAATGATGGCATCGAAAATCGTATCAAGAGAAACAAAGAGAATGCTAGCACAGTGTGATAATAGTCAGAATTCTACTTCAATGAGAACTGACAAGTCAAGGAGATCAAAGAGGTGGAAAACAGCATGTCAACAGCAAGCTACTGAAGCATCAAATAGTTTCTGTGGAAATGACGAACAGAATTCTGCTGTAATTCTGAATAGGGATGTATCAGTTAATGCAGAGGATCATGAATATCATCAGGTTACATCAAGGAGGTCAAAGAGGTTAAAGACTGTGTCTCAACAACAAACTGCTGAAATGTCAAATAGTTTTTGTGCAAATGATGAACAAAATACTGCTTCAAGTACAGAAGTACTTAAAGGCCTCGGTAGATACCGAATCAAAAGGAAACCTGTGAGTATTCACATTCAATTGGTCAAGCATTCTATCAGAGAATCAGACAAGGATTCGCTACGGAGTATGAAGATTCTGGAGACAATATTTATAAATGTTCTTATTGCGATGCGTATTTCTGGTTTGAAGAAGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

331

Amino Acids

37.59

Weight (kDa)

8.78

Isoelectric Point (pI)

53.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18430 AT3G18430 AT3G18430
fragaria_vesca	FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_6g29301 FvH4_6g29301
malus_domestica	MD02G1005100.v1.1 MD17G1216100.v1.1
prunus_persica	Prupe.3G092200_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1
pyrus_communis	pycom02g00390 pycom15g13350 pycom17g22070
rosa_chinensis	RchiOBHm_Chr2g0085251 RchiOBHm_Chr2g0134491
rosa_laevigata	RLG00000015671 RLG00000019396 RLG00000019398
rosa_multiflora	Rmu_sc0005464.1_g000027
rosa_roxburghii	Rroxscaffold_2G00110170 Rroxscaffold_2G00155520
rosa_rugosa	Rorug01G0458600 Rorug01G0458600 Rorug02G0317500 Rorug02G0317600 Rorug02G0317700
rosa_samantha	Rh2AG007300 Rh2AG375600 Rh2BG007900 Rh2CG008700 Rh2CG354100 Rh2DG009000 Rh2DG393200
rosa_wichuraiana	Rw2G000690 Rw2G030150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	950
Acc65I	GGTACC	1 cut(s)	4
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	1 cut(s)	11
AciI	CCGC	2 cut(s)	9, 21
AclWI	GGATC	2 cut(s)	380, 696
AcsI	RAATTY	2 cut(s)	532, 643
AcuI	CTGAAG	2 cut(s)	449, 627
AcvI	CACGTG	1 cut(s)	95
AdeI	CACNNNGTG	1 cut(s)	518
AfaI	GTAC	3 cut(s)	6, 811, 819
AgsI	TTSAA	4 cut(s)	543, 807, 875, 985
AluBI	AGCT	5 cut(s)	71, 175, 345, 602, 991
AluI	AGCT	5 cut(s)	71, 175, 345, 602, 991
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	3 cut(s)	246, 747, 932
AlwI	GGATC	2 cut(s)	380, 696
AoxI	GGCC	1 cut(s)	826
ApeKI	GCWGC	1 cut(s)	18
ApoI	RAATTY	2 cut(s)	532, 643
Asp718I	GGTACC	1 cut(s)	4
AspLEI	GCGC	1 cut(s)	13
AsuHPI	GGTGA	1 cut(s)	415
AsuNHI	GCTAGC	1 cut(s)	508
BanI	GGYRCC	1 cut(s)	4
BbrPI	CACGTG	1 cut(s)	95
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	5
BccI	CCATC	2 cut(s)	442, 463
BcoDI	GTCTC	3 cut(s)	246, 747, 932
BfaI	CTAG	1 cut(s)	509
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
BmcAI	AGTACT	1 cut(s)	819
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	3 cut(s)	482, 620, 957
BmtI	GCTAGC	1 cut(s)	512
BpmI	CTGGAG	1 cut(s)	956
BsaAI	YACGTR	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	829
BseDI	CCNNGG	1 cut(s)	829
BseGI	GGATG	1 cut(s)	673
BseMII	CTCAG	1 cut(s)	404
BseXI	GCAGC	1 cut(s)	5
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	1 cut(s)	828
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	54
BsmAI	GTCTC	3 cut(s)	246, 747, 932
BsmI	GAATGC	2 cut(s)	510, 886
BsnI	GGCC	1 cut(s)	828
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	3 cut(s)	385, 566, 688
BspACI	CCGC	2 cut(s)	9, 21
BspANI	GGCC	1 cut(s)	828
BspCNI	CTCAG	1 cut(s)	403
BspFNI	CGCG	1 cut(s)	11
BspHI	TCATGA	1 cut(s)	691
BspLI	GGNNCC	1 cut(s)	6
BspOI	GCTAGC	1 cut(s)	512
BspPI	GGATC	2 cut(s)	380, 696
BspQI	GCTCTTC	1 cut(s)	165
BspT107I	GGYRCC	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	829
BssMI	GATC	3 cut(s)	385, 566, 688
Bst4CI	ACNGT	3 cut(s)	340, 516, 739
Bst6I	CTCTTC	3 cut(s)	101, 165, 221
BstBAI	YACGTR	1 cut(s)	95
BstC8I	GCNNGC	2 cut(s)	510, 600
BstDEI	CTNAG	1 cut(s)	390
BstF5I	GGATG	1 cut(s)	673
BstFNI	CGCG	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	3 cut(s)	388, 569, 691
BstMAI	GTCTC	3 cut(s)	246, 747, 932
BstMBI	GATC	3 cut(s)	385, 566, 688
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 451, 608
BstNSI	RCATGY	1 cut(s)	591
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	5
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	1 cut(s)	828
BtgZI	GCGATG	1 cut(s)	980
BtsCI	GGATG	1 cut(s)	673
BtsIMutI	CAGTG	2 cut(s)	345, 521
Cac8I	GCNNGC	2 cut(s)	510, 600
CciI	TCATGA	1 cut(s)	691
CfoI	GCGC	1 cut(s)	13
Csp6I	GTAC	3 cut(s)	5, 810, 818
CviAII	CATG	2 cut(s)	588, 692
CviJI	RGCY	6 cut(s)	71, 175, 345, 602, 828, 991
CviKI_1	RGCY	6 cut(s)	71, 175, 345, 602, 828, 991
CviQI	GTAC	3 cut(s)	5, 810, 818
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	3 cut(s)	387, 568, 690
DpnII	GATC	3 cut(s)	385, 566, 688
DraIII	CACNNNGTG	1 cut(s)	518
Eam1104I	CTCTTC	3 cut(s)	101, 165, 221
EarI	CTCTTC	3 cut(s)	101, 165, 221
Eco147I	AGGCCT	1 cut(s)	828
Eco32I	GATATC	1 cut(s)	330
Eco57I	CTGAAG	2 cut(s)	449, 627
Eco72I	CACGTG	1 cut(s)	95
EcoRI	GAATTC	2 cut(s)	532, 643
EcoRV	GATATC	1 cut(s)	330
FaeI	CATG	2 cut(s)	591, 695
FaiI	YATR	7 cut(s)	244, 435, 443, 589, 693, 926, 950
FatI	CATG	2 cut(s)	587, 691
FauI	CCCGC	2 cut(s)	14, 16
Fnu4HI	GCNGC	1 cut(s)	19
FokI	GGATG	1 cut(s)	680
Fsp4HI	GCNGC	1 cut(s)	19
FspBI	CTAG	1 cut(s)	509
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	956
HaeIII	GGCC	1 cut(s)	828
HhaI	GCGC	1 cut(s)	13
Hin1II	CATG	2 cut(s)	591, 695
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HincII	GTYRAC	1 cut(s)	593
HindII	GTYRAC	1 cut(s)	593
HinfI	GANTC	7 cut(s)	86, 254, 397, 843, 899, 911, 931
HphI	GGTGA	1 cut(s)	415
Hpy166II	GTNNAC	1 cut(s)	593
Hpy188I	TCNGA	8 cut(s)	151, 327, 382, 393, 531, 660, 896, 904
Hpy188III	TCNNGA	5 cut(s)	125, 333, 489, 692, 935
Hpy8I	GTNNAC	1 cut(s)	593
HpyAV	CCTTC	3 cut(s)	34, 52, 95
HpyCH4III	ACNGT	3 cut(s)	340, 516, 739
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	3 cut(s)	246, 683, 782
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 451, 608
HpyF3I	CTNAG	1 cut(s)	390
HpySE526I	ACGT	1 cut(s)	94
Hsp92II	CATG	2 cut(s)	591, 695
HspAI	GCGC	1 cut(s)	11
KpnI	GGTACC	1 cut(s)	8
Kzo9I	GATC	3 cut(s)	385, 566, 688
LguI	GCTCTTC	1 cut(s)	165
LmnI	GCTCC	1 cut(s)	451
LpnPI	CCDG	8 cut(s)	40, 295, 318, 386, 689, 870, 920, 963
Lsp1109I	GCAGC	1 cut(s)	5
LweI	GCATC	3 cut(s)	482, 620, 957
MaeI	CTAG	1 cut(s)	509
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	1 cut(s)	706
MalI	GATC	3 cut(s)	387, 568, 690
MboI	GATC	3 cut(s)	385, 566, 688
MboII	GAAGA	6 cut(s)	110, 118, 182, 238, 395, 940
MfeI	CAATTG	2 cut(s)	260, 875
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	7 cut(s)	160, 216, 260, 532, 643, 654, 875
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	4 cut(s)	63, 147, 203, 213
MnlI	CCTC	9 cut(s)	173, 222, 229, 399, 567, 679, 711, 720, 839
MseI	TTAA	4 cut(s)	75, 678, 731, 822
MunI	CAATTG	2 cut(s)	260, 875
Mva1269I	GAATGC	2 cut(s)	510, 886
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	3 cut(s)	68, 451, 608
NdeII	GATC	3 cut(s)	385, 566, 688
NheI	GCTAGC	1 cut(s)	508
NlaIII	CATG	2 cut(s)	591, 695
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	591
PagI	TCATGA	1 cut(s)	691
PceI	AGGCCT	1 cut(s)	828
PciSI	GCTCTTC	1 cut(s)	165
PctI	GAATGC	2 cut(s)	510, 886
PfeI	GAWTC	6 cut(s)	86, 397, 843, 899, 911, 931
PflFI	GACNNNGTC	1 cut(s)	739
PkrI	GCNGC	1 cut(s)	20
PleI	GAGTC	1 cut(s)	248
PmaCI	CACGTG	1 cut(s)	95
PmlI	CACGTG	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	248
Ppu21I	YACGTR	1 cut(s)	95
PsiI	TTATAA	1 cut(s)	950
PspCI	CACGTG	1 cut(s)	95
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	385
PsyI	GACNNNGTC	1 cut(s)	739
RsaI	GTAC	3 cut(s)	6, 811, 819
RsaNI	GTAC	3 cut(s)	5, 810, 818
SapI	GCTCTTC	1 cut(s)	165
SaqAI	TTAA	4 cut(s)	75, 678, 731, 822
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	3 cut(s)	385, 566, 688
ScaI	AGTACT	1 cut(s)	819
SchI	GAGTC	1 cut(s)	248
SduI	GDGCHC	1 cut(s)	54
SfaNI	GCATC	3 cut(s)	482, 620, 957
Sse9I	AATT	7 cut(s)	160, 216, 260, 532, 643, 654, 875
SseBI	AGGCCT	1 cut(s)	828
SsiI	CCGC	2 cut(s)	9, 21
SspI	AATATT	1 cut(s)	945
SspMI	CTAG	1 cut(s)	509
StuI	AGGCCT	1 cut(s)	828
TaaI	ACNGT	3 cut(s)	340, 516, 739
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	2 cut(s)	38, 476
TasI	AATT	7 cut(s)	160, 216, 260, 532, 643, 654, 875
TatI	WGTACW	2 cut(s)	809, 817
TfiI	GAWTC	6 cut(s)	86, 397, 843, 899, 911, 931
Tru1I	TTAA	4 cut(s)	75, 678, 731, 822
Tru9I	TTAA	4 cut(s)	75, 678, 731, 822
TscAI	CASTG	2 cut(s)	345, 521
TseI	GCWGC	1 cut(s)	18
TspDTI	ATGAA	5 cut(s)	125, 410, 708, 804, 941
TspGWI	ACGGA	1 cut(s)	934
TspRI	CASTG	2 cut(s)	345, 521
Tth111I	GACNNNGTC	1 cut(s)	739
XapI	RAATTY	2 cut(s)	532, 643
XceI	RCATGY	1 cut(s)	591
XspI	CTAG	1 cut(s)	509
ZrmI	AGTACT	1 cut(s)	819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.