Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002587

Physical Location & Seq

Genomic Coordinates Forward (+)

91936201 .. 91939078

Gene Structure 2878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00155520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGGCAACACATCCTCCATGCTCACTCAGTACGACATCGAAGAGGTTCAGCAACACTGCAATCACACATTTTCGCAGCAGGAGATAGTTTCTCTGTACGAGAGGTTCTGTCAGCTCGATCGCAGCGGCGGAGGTTTCATCTCCGCCGACGAGTTCTTGTCCGTACCTGAATTCGCCGTCAATCCTCTCTCTCAGAGATTGCTGAAGGTTTTGGATGGATTGAACTTCAAGGAATTTGTAGCATTCTTGTCAGCATTCAGTTCTCTTTGGTTTGTCCTTCTGTTTCTAGTTGTCTTCAAGGTATATGATTCCGACCACAATGGGAAAGTCACGTTCAATGACATGCTGGATGTTTTACGGGATTTGACGGGGCAGTTCATATCTGAGCAACAGAGGGAGAGTACATTGTCTGATCGTATACCTTGGTGTAAAAGCTCTGTAATGCTTCCATTTAGATTGGAAAGGAAGCTTCAGATGGGATTAGCACTTGGCTTAAACAAGCTGCTCTTCTGTAAACAAGTGTTGACCCATGTCCTCGAGGAATCTGGCTATACAAAGGATTCTTCACTAACCATATCTGACTTTGTGAAGACTCTTGGAAACTCAGCTTTGAAGATGGAGGTTGAGGTTCCTGTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_7

Protein Analysis

213

Amino Acids

24.24

Weight (kDa)

5.03

Isoelectric Point (pI)

36.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18430 AT3G18430 AT3G18430
fragaria_vesca	FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_6g29301 FvH4_6g29301
malus_domestica	MD02G1005100.v1.1 MD17G1216100.v1.1
prunus_persica	Prupe.3G092200_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1
pyrus_communis	pycom02g00390 pycom15g13350 pycom17g22070
rosa_chinensis	RchiOBHm_Chr2g0085251 RchiOBHm_Chr2g0134491
rosa_laevigata	RLG00000015671 RLG00000019396 RLG00000019398
rosa_multiflora	Rmu_sc0005464.1_g000027
rosa_roxburghii	Rroxscaffold_2G00110170 Rroxscaffold_2G00155520
rosa_rugosa	Rorug01G0458600 Rorug01G0458600 Rorug02G0317500 Rorug02G0317600 Rorug02G0317700
rosa_samantha	Rh2AG007300 Rh2AG375600 Rh2BG007900 Rh2CG008700 Rh2CG354100 Rh2DG009000 Rh2DG393200
rosa_wichuraiana	Rw2G000690 Rw2G030150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	536
AccI	GTMKAC	1 cut(s)	418
AciI	CCGC	3 cut(s)	126, 129, 144
AcsI	RAATTY	2 cut(s)	170, 233
AcuI	CTGAAG	2 cut(s)	224, 455
AfaI	GTAC	4 cut(s)	32, 98, 165, 403
AgsI	TTSAA	5 cut(s)	223, 229, 298, 337, 613
AluBI	AGCT	5 cut(s)	115, 435, 469, 502, 608
AluI	AGCT	5 cut(s)	115, 435, 469, 502, 608
Ama87I	CYCGRG	1 cut(s)	536
ApeKI	GCWGC	3 cut(s)	76, 123, 502
ApoI	RAATTY	2 cut(s)	170, 233
Asp700I	GAANNNNTTC	1 cut(s)	45
AvaI	CYCGRG	1 cut(s)	536
BbsI	GAAGAC	2 cut(s)	286, 596
BbvI	GCAGC	3 cut(s)	88, 135, 489
BccI	CCATC	3 cut(s)	209, 469, 610
BceAI	ACGGC	1 cut(s)	161
BfaI	CTAG	1 cut(s)	287
BisI	GCNGC	4 cut(s)	77, 124, 127, 503
BlsI	GCNGC	4 cut(s)	78, 125, 128, 504
BmeT110I	CYCGRG	1 cut(s)	536
BmiI	GGNNCC	1 cut(s)	630
BoxI	GACNNNNGTC	1 cut(s)	530
BpiI	GAAGAC	2 cut(s)	286, 596
BsaJI	CCNNGG	1 cut(s)	422
BsaXI	ACNNNNNCTCC	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	422
BseGI	GGATG	3 cut(s)	11, 220, 355
BseMII	CTCAG	4 cut(s)	41, 206, 375, 618
BseXI	GCAGC	3 cut(s)	88, 135, 489
Bsh1285I	CGRYCG	1 cut(s)	121
BsiEI	CGRYCG	1 cut(s)	121
BsiHKCI	CYCGRG	1 cut(s)	536
BsmI	GAATGC	2 cut(s)	242, 254
BsoBI	CYCGRG	1 cut(s)	536
Bsp143I	GATC	2 cut(s)	118, 412
BspACI	CCGC	3 cut(s)	126, 129, 144
BspCNI	CTCAG	4 cut(s)	40, 205, 376, 617
BspLI	GGNNCC	1 cut(s)	630
BspQI	GCTCTTC	1 cut(s)	512
BssECI	CCNNGG	1 cut(s)	422
BssMI	GATC	2 cut(s)	118, 412
BssNAI	GTATAC	1 cut(s)	419
BssT1I	CCWWGG	1 cut(s)	422
Bst1107I	GTATAC	1 cut(s)	419
Bst6I	CTCTTC	2 cut(s)	36, 512
BstDEI	CTNAG	4 cut(s)	27, 192, 384, 604
BstF5I	GGATG	3 cut(s)	11, 220, 355
BstKTI	GATC	2 cut(s)	121, 415
BstMBI	GATC	2 cut(s)	118, 412
BstMCI	CGRYCG	1 cut(s)	121
BstNSI	RCATGY	1 cut(s)	346
BstPAI	GACNNNNGTC	1 cut(s)	530
BstV1I	GCAGC	3 cut(s)	88, 135, 489
BstV2I	GAAGAC	2 cut(s)	286, 596
BstZ17I	GTATAC	1 cut(s)	419
BtsCI	GGATG	3 cut(s)	11, 220, 355
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	55
Csp6I	GTAC	4 cut(s)	31, 97, 164, 402
CviAII	CATG	3 cut(s)	19, 343, 530
CviJI	RGCY	7 cut(s)	115, 435, 469, 492, 502, 549, 608
CviKI_1	RGCY	7 cut(s)	115, 435, 469, 492, 502, 549, 608
CviQI	GTAC	4 cut(s)	31, 97, 164, 402
DdeI	CTNAG	4 cut(s)	27, 192, 384, 604
DpnI	GATC	2 cut(s)	120, 414
DpnII	GATC	2 cut(s)	118, 412
Eam1104I	CTCTTC	2 cut(s)	36, 512
EarI	CTCTTC	2 cut(s)	36, 512
EciI	GGCGGA	2 cut(s)	133, 144
Eco130I	CCWWGG	1 cut(s)	422
Eco57I	CTGAAG	2 cut(s)	224, 455
Eco88I	CYCGRG	1 cut(s)	536
EcoRI	GAATTC	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	422
ErhI	CCWWGG	1 cut(s)	422
FaeI	CATG	3 cut(s)	22, 346, 533
FaiI	YATR	9 cut(s)	20, 304, 306, 344, 380, 419, 531, 552, 575
FalI	AAGNNNNNCTT	2 cut(s)	491, 523
FatI	CATG	3 cut(s)	18, 342, 529
FblI	GTMKAC	1 cut(s)	418
Fnu4HI	GCNGC	4 cut(s)	77, 124, 127, 503
FokI	GGATG	2 cut(s)	227, 362
Fsp4HI	GCNGC	4 cut(s)	77, 124, 127, 503
FspBI	CTAG	1 cut(s)	287
GluI	GCNGC	4 cut(s)	77, 124, 127, 503
Hin1II	CATG	3 cut(s)	22, 346, 533
HincII	GTYRAC	1 cut(s)	525
HindII	GTYRAC	1 cut(s)	525
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	4 cut(s)	308, 542, 560, 592
Hpy166II	GTNNAC	3 cut(s)	419, 515, 525
Hpy188I	TCNGA	6 cut(s)	195, 313, 385, 412, 474, 580
Hpy8I	GTNNAC	3 cut(s)	419, 515, 525
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	2 cut(s)	199, 287
HpyCH4IV	ACGT	1 cut(s)	332
HpyCH4V	TGCA	1 cut(s)	60
HpyF3I	CTNAG	4 cut(s)	27, 192, 384, 604
HpySE526I	ACGT	1 cut(s)	332
Hsp92II	CATG	3 cut(s)	22, 346, 533
Kzo9I	GATC	2 cut(s)	118, 412
LguI	GCTCTTC	1 cut(s)	512
LpnPI	CCDG	4 cut(s)	65, 180, 332, 531
Lsp1109I	GCAGC	3 cut(s)	88, 135, 489
MaeI	CTAG	1 cut(s)	287
MaeII	ACGT	1 cut(s)	332
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	2 cut(s)	120, 414
MboI	GATC	2 cut(s)	118, 412
MboII	GAAGA	6 cut(s)	53, 286, 499, 555, 601, 625
MluCI	AATT	2 cut(s)	170, 233
MlyI	GAGTC	1 cut(s)	586
MmeI	TCCRAC	1 cut(s)	336
MroXI	GAANNNNTTC	1 cut(s)	45
MseI	TTAA	2 cut(s)	494, 640
MspA1I	CMGCKG	1 cut(s)	126
Mva1269I	GAATGC	2 cut(s)	242, 254
NdeII	GATC	2 cut(s)	118, 412
NlaIII	CATG	3 cut(s)	22, 346, 533
NlaIV	GGNNCC	1 cut(s)	630
NmuCI	GTSAC	1 cut(s)	328
NspI	RCATGY	1 cut(s)	346
PaeR7I	CTCGAG	1 cut(s)	536
PciSI	GCTCTTC	1 cut(s)	512
PctI	GAATGC	2 cut(s)	242, 254
PdmI	GAANNNNTTC	1 cut(s)	45
PfeI	GAWTC	3 cut(s)	308, 542, 560
PkrI	GCNGC	4 cut(s)	78, 125, 128, 504
Ple19I	CGATCG	1 cut(s)	121
PleI	GAGTC	1 cut(s)	586
PpsI	GAGTC	1 cut(s)	586
PshAI	GACNNNNGTC	1 cut(s)	530
PspN4I	GGNNCC	1 cut(s)	630
PspXI	VCTCGAGB	1 cut(s)	536
PsrI	GAACNNNNNNTAC	2 cut(s)	89, 121
PvuI	CGATCG	1 cut(s)	121
RsaI	GTAC	4 cut(s)	32, 98, 165, 403
RsaNI	GTAC	4 cut(s)	31, 97, 164, 402
SapI	GCTCTTC	1 cut(s)	512
SaqAI	TTAA	2 cut(s)	494, 640
SatI	GCNGC	4 cut(s)	77, 124, 127, 503
Sau3AI	GATC	2 cut(s)	118, 412
SchI	GAGTC	1 cut(s)	586
Sfr274I	CTCGAG	1 cut(s)	536
SlaI	CTCGAG	1 cut(s)	536
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
Sse9I	AATT	2 cut(s)	170, 233
SsiI	CCGC	3 cut(s)	126, 129, 144
SspMI	CTAG	1 cut(s)	287
StyI	CCWWGG	1 cut(s)	422
TaiI	ACGT	1 cut(s)	335
TaqI	TCGA	3 cut(s)	39, 117, 537
TasI	AATT	2 cut(s)	170, 233
TatI	WGTACW	1 cut(s)	401
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	3 cut(s)	308, 542, 560
Tru1I	TTAA	2 cut(s)	494, 640
Tru9I	TTAA	2 cut(s)	494, 640
TscAI	CASTG	1 cut(s)	62
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	3 cut(s)	76, 123, 502
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	2 cut(s)	127, 367
TspGWI	ACGGA	1 cut(s)	151
TspRI	CASTG	1 cut(s)	62
XapI	RAATTY	2 cut(s)	170, 233
XceI	RCATGY	1 cut(s)	346
XhoI	CTCGAG	1 cut(s)	536
XmiI	GTMKAC	1 cut(s)	418
XmnI	GAANNNNTTC	1 cut(s)	45
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.