Rorug02G0317700

Calcineurin subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002587
Physical Location & Seq
Forward (+)
38754322 .. 38757253
2932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0317700.1

Sequence Viewer

Length: 864 bp
ATGCCCTTCCCTCAGGACCGCCTGGACCTCCCTCTCGACGCCCTCATCGCCGAATCCAAGCAACAACGCCGTCACAACAGCCACGCTCACCAGCCACGAGGGCATAACGGTCATTTCGGCGGCGGAGGCTCCACCTCAGGCCCCTCTCGTCGGCCGATGAACCGCAACGCCTACAGAACGGCGCCGTATCCCACTCTGCCGGAAATGCAAGGACAGCCTGGACCCAGAAGGATTGAGCTGCCATTGGCTTTGAGCCAAGCGATGAACAGTGAGGGAAGCACCAAGCTTTATATATCTAACTTGGACTATGATGTTACCAATCGAGATATAGAGTTGCTCTTCTCTGAGGTTGGTGAATTGGAAAGGCACTCAATCCATTATGATAAAAGTGGAAGATCTAAGGGAACAGCTGAAGTTGTCTATAAGCACTATTCAGATGCTCTAGCAGCAATCGAGAGATACAACAATCAGCATCTTGATGGAAAGAAAGTGGAAATTAAGCTTGTGGGACTCAATGTTGTTTCTCCTGTTCCTCTGCTTCTGCCTCCAAATACAAATTTCATGCAAGAACATCCAACTCCCGTCTTCCAGAGGCTAGGAAGAGCTGGTTCAAGGGGATCGTTTCATGGTCATGGTGGTGTTGGACTTGAAAGAGGCTGTGGACAGGTGAGAAATGGTGGTCCGAAGGTTACTACAGAATCTCAGCAATGGAAGAATGTGACTGCAGAAAATCAGCAAAGGAAGAATGTGATTACAGAATCTGTTAAAAGGAAGAAAACATTTTATGGAGATACAACTGTGACTTTTGATGATCTGGATGCTGATTTGGAAAAATACCGCCTAAAATGTAGGCCGGTAAACTGA

Protein Analysis

287

Amino Acids

32.1

Weight (kDa)

9.43

Isoelectric Point (pI)

49.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 96 - 164 1e-15 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 181
AciI CCGC 5 cut(s) 19, 120, 123, 163, 838
AclWI GGATC 1 cut(s) 625
AcoI YGGCCR 1 cut(s) 152
AcsI RAATTY 1 cut(s) 556
AcuI CTGAAG 1 cut(s) 432
AcyI GRCGYC 2 cut(s) 39, 182
AfiI CCNNNNNNNGG 1 cut(s) 150
AgsI TTSAA 2 cut(s) 612, 650
AjnI CCWGG 2 cut(s) 21, 217
AluBI AGCT 5 cut(s) 238, 286, 410, 502, 605
AluI AGCT 5 cut(s) 238, 286, 410, 502, 605
AlwI GGATC 1 cut(s) 625
AlwNI CAGNNNCTG 1 cut(s) 761
AoxI GGCC 3 cut(s) 139, 152, 851
ApeKI GCWGC 2 cut(s) 238, 446
ApoI RAATTY 1 cut(s) 556
AspLEI GCGC 1 cut(s) 184
AspS9I GGNCC 5 cut(s) 16, 25, 140, 221, 680
AsuHPI GGTGA 3 cut(s) 80, 365, 679
AvaII GGWCC 4 cut(s) 16, 25, 221, 680
AxyI CCTNAGG 2 cut(s) 12, 136
BaeI ACNNNNGTAYC 2 cut(s) 783, 816
BanI GGYRCC 1 cut(s) 181
BauI CACGAG 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 577
BbvI GCAGC 2 cut(s) 225, 458
BccI CCATC 1 cut(s) 473
BceAI ACGGC 3 cut(s) 54, 169, 195
BciT130I CCWGG 2 cut(s) 23, 219
BciVI GTATCC 1 cut(s) 198
BfaI CTAG 2 cut(s) 443, 596
BfmI CTRYAG 3 cut(s) 172, 693, 723
BfoI RGCGCY 1 cut(s) 185
BfuI GTATCC 1 cut(s) 198
BglI GCCNNNNNGGC 1 cut(s) 100
BglII AGATCT 1 cut(s) 395
BisI GCNGC 3 cut(s) 121, 239, 447
BlsI GCNGC 3 cut(s) 122, 240, 448
Bme1390I CCNGG 2 cut(s) 23, 219
Bme18I GGWCC 4 cut(s) 16, 25, 221, 680
BmgT120I GGNCC 5 cut(s) 16, 25, 140, 221, 680
BmiI GGNNCC 4 cut(s) 130, 142, 183, 223
BmrFI CCNGG 2 cut(s) 23, 219
BmsI GCATC 3 cut(s) 427, 481, 808
BpiI GAAGAC 1 cut(s) 577
BsaHI GRCGYC 2 cut(s) 39, 182
Bsc4I CCNNNNNNNGG 1 cut(s) 150
Bse118I RCCGGY 1 cut(s) 853
Bse21I CCTNAGG 2 cut(s) 12, 136
Bse3DI GCAATG 1 cut(s) 713
BseBI CCWGG 2 cut(s) 23, 219
BseGI GGATG 2 cut(s) 571, 823
BseLI CCNNNNNNNGG 1 cut(s) 150
BseMI GCAATG 1 cut(s) 713
BseMII CTCAG 4 cut(s) 26, 150, 336, 716
BseX3I CGGCCG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 225, 458
Bsh1285I CGRYCG 1 cut(s) 155
BshFI GGCC 3 cut(s) 141, 154, 853
BshNI GGYRCC 1 cut(s) 181
BsiEI CGRYCG 1 cut(s) 155
BsiSI CCGG 2 cut(s) 200, 854
BslFI GGGAC 1 cut(s) 522
BslI CCNNNNNNNGG 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 522
BsnI GGCC 3 cut(s) 141, 154, 853
Bsp143I GATC 3 cut(s) 395, 617, 811
BspACI CCGC 5 cut(s) 19, 120, 123, 163, 838
BspANI GGCC 3 cut(s) 141, 154, 853
BspCNI CTCAG 4 cut(s) 25, 149, 337, 715
BspLI GGNNCC 4 cut(s) 130, 142, 183, 223
BspMAI CTGCAG 1 cut(s) 727
BspPI GGATC 1 cut(s) 625
BspQI GCTCTTC 2 cut(s) 344, 595
BspT107I GGYRCC 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 713
BsrFI RCCGGY 1 cut(s) 853
BssAI RCCGGY 1 cut(s) 853
BssMI GATC 3 cut(s) 395, 617, 811
BssNI GRCGYC 2 cut(s) 39, 182
BssSI CACGAG 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 96
Bst2UI CCWGG 2 cut(s) 23, 219
Bst4CI ACNGT 3 cut(s) 110, 269, 799
Bst6I CTCTTC 2 cut(s) 344, 595
BstACI GRCGYC 2 cut(s) 39, 182
BstDEI CTNAG 5 cut(s) 12, 136, 345, 399, 702
BstF5I GGATG 2 cut(s) 571, 823
BstH2I RGCGCY 1 cut(s) 185
BstHHI GCGC 1 cut(s) 184
BstKTI GATC 3 cut(s) 398, 620, 814
BstMBI GATC 3 cut(s) 395, 617, 811
BstMCI CGRYCG 1 cut(s) 155
BstMWI GCNNNNNNNGC 6 cut(s) 47, 100, 126, 205, 214, 446
BstNI CCWGG 2 cut(s) 23, 219
BstSCI CCNGG 2 cut(s) 21, 217
BstSFI CTRYAG 3 cut(s) 172, 693, 723
BstV1I GCAGC 2 cut(s) 225, 458
BstV2I GAAGAC 1 cut(s) 577
BstX2I RGATCY 1 cut(s) 395
BstYI RGATCY 1 cut(s) 395
BstZI CGGCCG 1 cut(s) 152
Bsu36I CCTNAGG 2 cut(s) 12, 136
BsuI GTATCC 1 cut(s) 198
BsuRI GGCC 3 cut(s) 141, 154, 853
BtgZI GCGATG 2 cut(s) 31, 275
BtsCI GGATG 2 cut(s) 571, 823
BtsIMutI CAGTG 1 cut(s) 274
CaiI CAGNNNCTG 1 cut(s) 761
CfoI GCGC 1 cut(s) 184
Cfr10I RCCGGY 1 cut(s) 853
Cfr13I GGNCC 5 cut(s) 16, 25, 140, 221, 680
CseI GACGC 1 cut(s) 47
CviAII CATG 3 cut(s) 562, 626, 632
DdeI CTNAG 5 cut(s) 12, 136, 345, 399, 702
DinI GGCGCC 1 cut(s) 183
DpnI GATC 3 cut(s) 397, 619, 813
DpnII GATC 3 cut(s) 395, 617, 811
EaeI YGGCCR 1 cut(s) 152
EagI CGGCCG 1 cut(s) 152
Eam1104I CTCTTC 2 cut(s) 344, 595
EarI CTCTTC 2 cut(s) 344, 595
EciI GGCGGA 1 cut(s) 138
EclXI CGGCCG 1 cut(s) 152
Eco47I GGWCC 4 cut(s) 16, 25, 221, 680
Eco52I CGGCCG 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 432
Eco81I CCTNAGG 2 cut(s) 12, 136
EcoO109I RGGNCCY 1 cut(s) 140
EcoRII CCWGG 2 cut(s) 21, 217
EgeI GGCGCC 1 cut(s) 183
EheI GGCGCC 1 cut(s) 183
FaeI CATG 3 cut(s) 565, 629, 635
FaqI GGGAC 1 cut(s) 522
FatI CATG 3 cut(s) 561, 625, 631
Fnu4HI GCNGC 3 cut(s) 121, 239, 447
FokI GGATG 2 cut(s) 558, 830
Fsp4HI GCNGC 3 cut(s) 121, 239, 447
FspBI CTAG 2 cut(s) 443, 596
GlaI GCGC 1 cut(s) 183
GluI GCNGC 3 cut(s) 121, 239, 447
HaeII RGCGCY 1 cut(s) 185
HaeIII GGCC 3 cut(s) 141, 154, 853
HapII CCGG 2 cut(s) 200, 854
HgaI GACGC 1 cut(s) 47
HhaI GCGC 1 cut(s) 184
Hin1I GRCGYC 2 cut(s) 39, 182
Hin1II CATG 3 cut(s) 565, 629, 635
Hin6I GCGC 1 cut(s) 182
HinP1I GCGC 1 cut(s) 182
HindIII AAGCTT 2 cut(s) 284, 500
HinfI GANTC 4 cut(s) 53, 510, 698, 758
HpaII CCGG 2 cut(s) 200, 854
HphI GGTGA 3 cut(s) 80, 365, 679
Hpy166II GTNNAC 2 cut(s) 662, 859
Hpy188I TCNGA 3 cut(s) 346, 436, 684
Hpy188III TCNNGA 7 cut(s) 14, 35, 323, 454, 476, 589, 815
Hpy8I GTNNAC 2 cut(s) 662, 859
Hpy99I CGWCG 2 cut(s) 41, 153
HpyAV CCTTC 3 cut(s) 16, 222, 679
HpyCH4III ACNGT 3 cut(s) 110, 269, 799
HpyCH4V TGCA 3 cut(s) 208, 565, 725
HpyF10VI GCNNNNNNNGC 6 cut(s) 47, 100, 126, 205, 214, 446
HpyF3I CTNAG 5 cut(s) 12, 136, 345, 399, 702
Hsp92I GRCGYC 2 cut(s) 39, 182
Hsp92II CATG 3 cut(s) 565, 629, 635
HspAI GCGC 1 cut(s) 182
KasI GGCGCC 1 cut(s) 181
Kzo9I GATC 3 cut(s) 395, 617, 811
LguI GCTCTTC 2 cut(s) 344, 595
LmnI GCTCC 1 cut(s) 134
Lsp1109I GCAGC 2 cut(s) 225, 458
LweI GCATC 3 cut(s) 427, 481, 808
MaeI CTAG 2 cut(s) 443, 596
MaeIII GTNAC 5 cut(s) 71, 313, 688, 718, 799
MalI GATC 3 cut(s) 397, 619, 813
MboI GATC 3 cut(s) 395, 617, 811
MboII GAAGA 7 cut(s) 331, 405, 577, 612, 724, 754, 784
MflI RGATCY 1 cut(s) 395
MluCI AATT 3 cut(s) 356, 495, 556
Mly113I GGCGCC 1 cut(s) 182
MlyI GAGTC 1 cut(s) 504
MmeI TCCRAC 2 cut(s) 599, 622
MseI TTAA 2 cut(s) 498, 765
MslI CAYNNNNRTG 3 cut(s) 477, 630, 636
MspA1I CMGCKG 1 cut(s) 410
MspI CCGG 2 cut(s) 200, 854
MspR9I CCNGG 2 cut(s) 23, 219
MvaI CCWGG 2 cut(s) 23, 219
MwoI GCNNNNNNNGC 6 cut(s) 47, 100, 126, 205, 214, 446
NarI GGCGCC 1 cut(s) 182
NdeII GATC 3 cut(s) 395, 617, 811
NlaIII CATG 3 cut(s) 565, 629, 635
NlaIV GGNNCC 4 cut(s) 130, 142, 183, 223
NmuCI GTSAC 3 cut(s) 71, 718, 799
PciSI GCTCTTC 2 cut(s) 344, 595
PfeI GAWTC 3 cut(s) 53, 698, 758
PkrI GCNGC 3 cut(s) 122, 240, 448
PleI GAGTC 1 cut(s) 504
PluTI GGCGCC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 504
Psp6I CCWGG 2 cut(s) 21, 217
PspGI CCWGG 2 cut(s) 21, 217
PspN4I GGNNCC 4 cut(s) 130, 142, 183, 223
PspPI GGNCC 5 cut(s) 16, 25, 140, 221, 680
PstI CTGCAG 1 cut(s) 727
PstNI CAGNNNCTG 1 cut(s) 761
PsuI RGATCY 1 cut(s) 395
PvuII CAGCTG 1 cut(s) 410
RseI CAYNNNNRTG 3 cut(s) 477, 630, 636
SapI GCTCTTC 2 cut(s) 344, 595
SaqAI TTAA 2 cut(s) 498, 765
SatI GCNGC 3 cut(s) 121, 239, 447
Sau3AI GATC 3 cut(s) 395, 617, 811
Sau96I GGNCC 5 cut(s) 16, 25, 140, 221, 680
SchI GAGTC 1 cut(s) 504
ScrFI CCNGG 2 cut(s) 23, 219
SfaNI GCATC 3 cut(s) 427, 481, 808
SfcI CTRYAG 3 cut(s) 172, 693, 723
SfoI GGCGCC 1 cut(s) 183
SinI GGWCC 4 cut(s) 16, 25, 221, 680
SmiMI CAYNNNNRTG 3 cut(s) 477, 630, 636
Sse9I AATT 3 cut(s) 356, 495, 556
SsiI CCGC 5 cut(s) 19, 120, 123, 163, 838
SspDI GGCGCC 1 cut(s) 181
SspMI CTAG 2 cut(s) 443, 596
StyD4I CCNGG 2 cut(s) 21, 217
TaaI ACNGT 3 cut(s) 110, 269, 799
TaqI TCGA 3 cut(s) 36, 322, 453
TasI AATT 3 cut(s) 356, 495, 556
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 3 cut(s) 53, 698, 758
Tru1I TTAA 2 cut(s) 498, 765
Tru9I TTAA 2 cut(s) 498, 765
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 3 cut(s) 71, 718, 799
TseI GCWGC 2 cut(s) 238, 446
Tsp45I GTSAC 3 cut(s) 71, 718, 799
TspDTI ATGAA 4 cut(s) 173, 278, 550, 614
TspRI CASTG 1 cut(s) 274
VpaK11BI GGWCC 4 cut(s) 16, 25, 221, 680
XapI RAATTY 1 cut(s) 556
XspI CTAG 2 cut(s) 443, 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.