Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002587

Physical Location & Seq

Genomic Coordinates Reverse (-)

753238 .. 759102

Gene Structure 5865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG008700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGGCAACACATCCTCCATGCTCACTCAGTACGACATCGAAGAAGTTCAGCAACACTGCAATCACACATTTTCGCAGCAGGAGATAGTTTCTCTGTACGAGAGGTTCTGTCAGCTCGATCGCAGCGGCGGAGGTTTCATCTCCGCCGACGAGTTCTTGTCCGTACCTGAATTCGCAGTCAATCCTCTCTCTCAGAGATTGCTGAAGGTTTTGGATGGATTGAACTTCAAGGAATTTGTTGCATTCTTGTCAGCATTCAGTTCTCGTGCAAGCTTGCAGCAAAAGATTGAGTTTATCTTCAAGGTATATGATTCCGACCACAATGGGAAAGTCACGTTCAATGACATGCTGGATGTTTTACGGGATTTGACGGGGCAGTTCATATCTGAGCAACAGAGGGAGGTTGGTTATTATCCAAAATTCTCGCATGCATTGCTTGCTTATTTCAATTTTAGGGTAGTAAAGCAGACAAATATTTCAGTTGTAAGTTTTTGTACTTCATGCATACTTAGATTACATGGTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_7

Protein Analysis

175

Amino Acids

20.05

Weight (kDa)

5.69

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	31 - 120	7.6e-09	EF-hand domain pair
EF-hand_1	PF00036	96 - 122	8.1e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18430 AT3G18430 AT3G18430
fragaria_vesca	FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_6g29301 FvH4_6g29301
malus_domestica	MD02G1005100.v1.1 MD17G1216100.v1.1
prunus_persica	Prupe.3G092200_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1
pyrus_communis	pycom02g00390 pycom15g13350 pycom17g22070
rosa_chinensis	RchiOBHm_Chr2g0085251 RchiOBHm_Chr2g0134491
rosa_laevigata	RLG00000015671 RLG00000019396 RLG00000019398
rosa_multiflora	Rmu_sc0005464.1_g000027
rosa_roxburghii	Rroxscaffold_2G00110170 Rroxscaffold_2G00155520
rosa_rugosa	Rorug01G0458600 Rorug01G0458600 Rorug02G0317500 Rorug02G0317600 Rorug02G0317700
rosa_samantha	Rh2AG007300 Rh2AG375600 Rh2BG007900 Rh2CG008700 Rh2CG354100 Rh2DG009000 Rh2DG393200
rosa_wichuraiana	Rw2G000690 Rw2G030150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	126, 129, 144
AcsI	RAATTY	3 cut(s)	170, 233, 419
AcuI	CTGAAG	1 cut(s)	224
AfaI	GTAC	4 cut(s)	32, 98, 165, 496
AgsI	TTSAA	5 cut(s)	223, 229, 301, 340, 448
AluBI	AGCT	2 cut(s)	115, 273
AluI	AGCT	2 cut(s)	115, 273
ApeKI	GCWGC	3 cut(s)	76, 123, 277
ApoI	RAATTY	3 cut(s)	170, 233, 419
Asp700I	GAANNNNTTC	1 cut(s)	45
BauI	CACGAG	1 cut(s)	264
BbvI	GCAGC	3 cut(s)	88, 135, 289
BccI	CCATC	1 cut(s)	209
BisI	GCNGC	4 cut(s)	77, 124, 127, 278
BlsI	GCNGC	4 cut(s)	78, 125, 128, 279
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bse3DI	GCAATG	1 cut(s)	431
BseGI	GGATG	3 cut(s)	11, 220, 358
BseMI	GCAATG	1 cut(s)	431
BseMII	CTCAG	3 cut(s)	41, 206, 378
BseXI	GCAGC	3 cut(s)	88, 135, 289
Bsh1285I	CGRYCG	1 cut(s)	121
BsiEI	CGRYCG	1 cut(s)	121
BsmI	GAATGC	2 cut(s)	242, 254
Bsp143I	GATC	1 cut(s)	118
BspACI	CCGC	3 cut(s)	126, 129, 144
BspCNI	CTCAG	3 cut(s)	40, 205, 379
BsrDI	GCAATG	1 cut(s)	431
BssMI	GATC	1 cut(s)	118
BssSI	CACGAG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	264
BstAPI	GCANNNNNTGC	2 cut(s)	433, 437
BstC8I	GCNNGC	4 cut(s)	271, 275, 429, 438
BstDEI	CTNAG	4 cut(s)	27, 192, 387, 509
BstF5I	GGATG	3 cut(s)	11, 220, 358
BstKTI	GATC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	118
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	2 cut(s)	433, 437
BstNSI	RCATGY	2 cut(s)	349, 431
BstV1I	GCAGC	3 cut(s)	88, 135, 289
BtsCI	GGATG	3 cut(s)	11, 220, 358
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	4 cut(s)	271, 275, 429, 438
Csp6I	GTAC	4 cut(s)	31, 97, 164, 495
CviAII	CATG	5 cut(s)	19, 346, 428, 501, 518
CviJI	RGCY	2 cut(s)	115, 273
CviKI_1	RGCY	2 cut(s)	115, 273
CviQI	GTAC	4 cut(s)	31, 97, 164, 495
DdeI	CTNAG	4 cut(s)	27, 192, 387, 509
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
EciI	GGCGGA	2 cut(s)	133, 144
Eco57I	CTGAAG	1 cut(s)	224
EcoRI	GAATTC	1 cut(s)	170
EcoT22I	ATGCAT	2 cut(s)	433, 506
FaeI	CATG	5 cut(s)	22, 349, 431, 504, 521
FaiI	YATR	9 cut(s)	20, 307, 309, 347, 383, 429, 502, 506, 519
FatI	CATG	5 cut(s)	18, 345, 427, 500, 517
Fnu4HI	GCNGC	4 cut(s)	77, 124, 127, 278
FokI	GGATG	2 cut(s)	227, 365
Fsp4HI	GCNGC	4 cut(s)	77, 124, 127, 278
GluI	GCNGC	4 cut(s)	77, 124, 127, 278
Hin1II	CATG	5 cut(s)	22, 349, 431, 504, 521
HindIII	AAGCTT	1 cut(s)	271
HinfI	GANTC	1 cut(s)	311
Hpy188I	TCNGA	3 cut(s)	195, 316, 388
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	199
HpyCH4IV	ACGT	1 cut(s)	335
HpyCH4V	TGCA	6 cut(s)	60, 242, 269, 277, 431, 504
HpyF10VI	GCNNNNNNNGC	2 cut(s)	433, 437
HpyF3I	CTNAG	4 cut(s)	27, 192, 387, 509
HpySE526I	ACGT	1 cut(s)	335
Hsp92II	CATG	5 cut(s)	22, 349, 431, 504, 521
Kzo9I	GATC	1 cut(s)	118
LpnPI	CCDG	3 cut(s)	65, 180, 335
Lsp1109I	GCAGC	3 cut(s)	88, 135, 289
MaeII	ACGT	1 cut(s)	335
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	2 cut(s)	53, 289
MluCI	AATT	4 cut(s)	170, 233, 419, 448
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	6 cut(s)	25, 96, 125, 195, 390, 394
Mph1103I	ATGCAT	2 cut(s)	433, 506
MroXI	GAANNNNTTC	1 cut(s)	45
MspA1I	CMGCKG	1 cut(s)	126
Mva1269I	GAATGC	2 cut(s)	242, 254
MwoI	GCNNNNNNNGC	2 cut(s)	433, 437
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	5 cut(s)	22, 349, 431, 504, 521
NmuCI	GTSAC	1 cut(s)	331
NsiI	ATGCAT	2 cut(s)	433, 506
NspI	RCATGY	2 cut(s)	349, 431
PaeI	GCATGC	1 cut(s)	431
PctI	GAATGC	2 cut(s)	242, 254
PdmI	GAANNNNTTC	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	311
PkrI	GCNGC	4 cut(s)	78, 125, 128, 279
Ple19I	CGATCG	1 cut(s)	121
PsrI	GAACNNNNNNTAC	2 cut(s)	89, 121
PvuI	CGATCG	1 cut(s)	121
RsaI	GTAC	4 cut(s)	32, 98, 165, 496
RsaNI	GTAC	4 cut(s)	31, 97, 164, 495
SatI	GCNGC	4 cut(s)	77, 124, 127, 278
Sau3AI	GATC	1 cut(s)	118
SetI	ASST	9 cut(s)	107, 117, 136, 169, 210, 275, 306, 338, 405
SphI	GCATGC	1 cut(s)	431
Sse9I	AATT	4 cut(s)	170, 233, 419, 448
SsiI	CCGC	3 cut(s)	126, 129, 144
SspI	AATATT	1 cut(s)	475
TaiI	ACGT	1 cut(s)	338
TaqI	TCGA	2 cut(s)	39, 117
TasI	AATT	4 cut(s)	170, 233, 419, 448
TatI	WGTACW	1 cut(s)	494
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	1 cut(s)	311
TscAI	CASTG	1 cut(s)	62
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	3 cut(s)	76, 123, 277
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	3 cut(s)	127, 370, 489
TspGWI	ACGGA	1 cut(s)	151
TspRI	CASTG	1 cut(s)	62
XapI	RAATTY	3 cut(s)	170, 233, 419
XceI	RCATGY	2 cut(s)	349, 431
XmnI	GAANNNNTTC	1 cut(s)	45
Zsp2I	ATGCAT	2 cut(s)	433, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.