Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002587

Physical Location & Seq

Genomic Coordinates Forward (+)

6897048 .. 6901545

Gene Structure 4498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G092200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGGGAGCGCTTCATCCATGCTAACTCAGTATGACATTGAAGAAGTACAGGAACACTGCAATGATTTATTTTCTCAGCAAGAAATTGTATCCTTATATCAAAGATTTTGTCAACTTGATCGGAATGCAAAGGGTTTTATCTCAGCTGATGAATTCTTGTCGGTCCCCGAGTTTGCAATGAATCCACTCTCTCAGAGGTTGCTTAAGATGGTGGATGGTTTGAATTTTAAGGACTTTGTGGCCTTCTTGTCTGCATTTAGTGCTAGAGCTAGTATGCAGCAGAAAAGTGAACTTATTTTCAAGGTATATGACTCAGACTGTAATGGGAAGGTGTCTTTCAATGATATATTAGAAGTGCTGCGTGATTTGTCTGGTTCCTTCATGTCTGACGAGCAAAGAGAGAAAGTGTTGACTCAAGTCTTGCAAGAAGCAGGATATACAAGGGAATCTTATTTGACGTTAGATGACTTCGTTAAGGTTCTTGGCAGTTATGGCGTAAAAATGGAGGTTGAAGTGCCAATTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

176

Amino Acids

19.93

Weight (kDa)

4.48

Isoelectric Point (pI)

30.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18430 AT3G18430 AT3G18430
fragaria_vesca	FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_6g29301 FvH4_6g29301
malus_domestica	MD02G1005100.v1.1 MD17G1216100.v1.1
prunus_persica	Prupe.3G092200_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1
pyrus_communis	pycom02g00390 pycom15g13350 pycom17g22070
rosa_chinensis	RchiOBHm_Chr2g0085251 RchiOBHm_Chr2g0134491
rosa_laevigata	RLG00000015671 RLG00000019396 RLG00000019398
rosa_multiflora	Rmu_sc0005464.1_g000027
rosa_roxburghii	Rroxscaffold_2G00110170 Rroxscaffold_2G00155520
rosa_rugosa	Rorug01G0458600 Rorug01G0458600 Rorug02G0317500 Rorug02G0317600 Rorug02G0317700
rosa_samantha	Rh2AG007300 Rh2AG375600 Rh2BG007900 Rh2CG008700 Rh2CG354100 Rh2DG009000 Rh2DG393200
rosa_wichuraiana	Rw2G000690 Rw2G030150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	152, 223
AfaI	GTAC	1 cut(s)	48
AfeI	AGCGCT	1 cut(s)	10
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	5 cut(s)	41, 223, 301, 340, 512
AluBI	AGCT	2 cut(s)	146, 269
AluI	AGCT	2 cut(s)	146, 269
Ama87I	CYCGRG	1 cut(s)	167
Aor51HI	AGCGCT	1 cut(s)	10
AoxI	GGCC	1 cut(s)	240
ApeKI	GCWGC	2 cut(s)	277, 358
ApoI	RAATTY	2 cut(s)	152, 223
ArsI	GACNNNNNNTTYG	2 cut(s)	94, 126
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	163
AvaI	CYCGRG	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	163
BbvI	GCAGC	2 cut(s)	289, 345
BccI	CCATC	2 cut(s)	202, 209
BciVI	GTATCC	1 cut(s)	100
BfaI	CTAG	2 cut(s)	264, 270
BfoI	RGCGCY	1 cut(s)	12
BfrI	CTTAAG	1 cut(s)	203
BfuI	GTATCC	1 cut(s)	100
BisI	GCNGC	2 cut(s)	278, 359
BlsI	GCNGC	2 cut(s)	279, 360
Bme18I	GGWCC	1 cut(s)	163
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	165, 376
BoxI	GACNNNNGTC	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	399
Bse3DI	GCAATG	2 cut(s)	67, 183
BseGI	GGATG	2 cut(s)	14, 220
BseMI	GCAATG	2 cut(s)	67, 183
BseMII	CTCAG	5 cut(s)	41, 89, 156, 206, 327
BseXI	GCAGC	2 cut(s)	289, 345
BshFI	GGCC	1 cut(s)	242
BsiHKCI	CYCGRG	1 cut(s)	167
BslFI	GGGAC	1 cut(s)	149
BsmFI	GGGAC	1 cut(s)	149
BsmI	GAATGC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	242
BsoBI	CYCGRG	1 cut(s)	167
Bsp143I	GATC	1 cut(s)	118
BspANI	GGCC	1 cut(s)	242
BspCNI	CTCAG	5 cut(s)	40, 88, 155, 205, 326
BspLI	GGNNCC	2 cut(s)	165, 376
BspTI	CTTAAG	1 cut(s)	203
BsrDI	GCAATG	2 cut(s)	67, 183
BssMI	GATC	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	320
BstAFI	CTTAAG	1 cut(s)	203
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstDEI	CTNAG	5 cut(s)	27, 75, 142, 192, 313
BstF5I	GGATG	2 cut(s)	14, 220
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	118
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 492
BstPAI	GACNNNNGTC	1 cut(s)	416
BstV1I	GCAGC	2 cut(s)	289, 345
BsuI	GTATCC	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	242
BtsCI	GGATG	2 cut(s)	14, 220
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	55
CfoI	GCGC	1 cut(s)	11
Cfr13I	GGNCC	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	47
CviAII	CATG	2 cut(s)	19, 382
CviJI	RGCY	3 cut(s)	146, 242, 269
CviKI_1	RGCY	3 cut(s)	146, 242, 269
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	5 cut(s)	27, 75, 142, 192, 313
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	163
Eco47III	AGCGCT	1 cut(s)	10
Eco88I	CYCGRG	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	152
FaeI	CATG	2 cut(s)	22, 385
FalI	AAGNNNNNCTT	2 cut(s)	433, 465
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	2 cut(s)	18, 381
Fnu4HI	GCNGC	2 cut(s)	278, 359
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	2 cut(s)	278, 359
FspBI	CTAG	2 cut(s)	264, 270
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	2 cut(s)	278, 359
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	242
HhaI	GCGC	1 cut(s)	11
Hin1II	CATG	2 cut(s)	22, 385
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HincII	GTYRAC	2 cut(s)	113, 411
HindII	GTYRAC	2 cut(s)	113, 411
HinfI	GANTC	4 cut(s)	181, 311, 412, 446
Hpy166II	GTNNAC	3 cut(s)	113, 290, 411
Hpy188I	TCNGA	4 cut(s)	123, 195, 316, 388
Hpy8I	GTNNAC	3 cut(s)	113, 290, 411
HpyAV	CCTTC	3 cut(s)	253, 322, 388
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4IV	ACGT	1 cut(s)	458
HpyCH4V	TGCA	6 cut(s)	60, 128, 176, 254, 277, 424
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 492
HpyF3I	CTNAG	5 cut(s)	27, 75, 142, 192, 313
HpySE526I	ACGT	1 cut(s)	458
Hsp92II	CATG	2 cut(s)	22, 385
HspAI	GCGC	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	118
LmnI	GCTCC	1 cut(s)	6
LpnPI	CCDG	3 cut(s)	35, 357, 417
Lsp1109I	GCAGC	2 cut(s)	289, 345
MaeI	CTAG	2 cut(s)	264, 270
MaeII	ACGT	1 cut(s)	458
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	1 cut(s)	53
MfeI	CAATTG	1 cut(s)	519
MluCI	AATT	4 cut(s)	84, 152, 223, 519
MlyI	GAGTC	2 cut(s)	305, 406
MnlI	CCTC	2 cut(s)	189, 499
MseI	TTAA	4 cut(s)	204, 228, 474, 526
MslI	CAYNNNNRTG	1 cut(s)	60
MspA1I	CMGCKG	1 cut(s)	146
MspCI	CTTAAG	1 cut(s)	203
MunI	CAATTG	1 cut(s)	519
Mva1269I	GAATGC	1 cut(s)	130
MwoI	GCNNNNNNNGC	2 cut(s)	260, 492
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	2 cut(s)	22, 385
NlaIV	GGNNCC	2 cut(s)	165, 376
PctI	GAATGC	1 cut(s)	130
PfeI	GAWTC	2 cut(s)	181, 446
PkrI	GCNGC	2 cut(s)	279, 360
PleI	GAGTC	2 cut(s)	305, 406
PpsI	GAGTC	2 cut(s)	305, 406
PshAI	GACNNNNGTC	1 cut(s)	416
PspN4I	GGNNCC	2 cut(s)	165, 376
PspPI	GGNCC	1 cut(s)	163
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
RseI	CAYNNNNRTG	1 cut(s)	60
SaqAI	TTAA	4 cut(s)	204, 228, 474, 526
SatI	GCNGC	2 cut(s)	278, 359
Sau3AI	GATC	1 cut(s)	118
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	2 cut(s)	305, 406
SetI	ASST	8 cut(s)	148, 200, 271, 306, 333, 461, 480, 510
SinI	GGWCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	60
SmlI	CTYRAG	2 cut(s)	203, 414
SmoI	CTYRAG	2 cut(s)	203, 414
Sse9I	AATT	4 cut(s)	84, 152, 223, 519
SspMI	CTAG	2 cut(s)	264, 270
TaaI	ACNGT	1 cut(s)	320
TaiI	ACGT	1 cut(s)	461
TaqII	GACCGA	1 cut(s)	151
TasI	AATT	4 cut(s)	84, 152, 223, 519
TatI	WGTACW	1 cut(s)	46
TfiI	GAWTC	2 cut(s)	181, 446
Tru1I	TTAA	4 cut(s)	204, 228, 474, 526
Tru9I	TTAA	4 cut(s)	204, 228, 474, 526
TscAI	CASTG	1 cut(s)	62
TseI	GCWGC	2 cut(s)	277, 358
TspDTI	ATGAA	3 cut(s)	165, 194, 370
TspRI	CASTG	1 cut(s)	62
Vha464I	CTTAAG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	163
XapI	RAATTY	2 cut(s)	152, 223
XspI	CTAG	2 cut(s)	264, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.