Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005464.1

Orthogroup ID

OG0002587

Physical Location & Seq

Genomic Coordinates Reverse (-)

94513 .. 97782

Gene Structure 3270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005464.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgggaagtacctcgtcgatgctaactcagtatgacattgaagaagtacaggagcactgccataatttattttcccagcaagaaattgtatccttgtataaaagattttgtcagctggatcggaatgcaaagggtttcatctcatctgatgaattcttatcagtacccgagttagcaacgaatccaatatctcagaggctgcttaagatggtggaaggtttgaactttaaggactttgtggctttcttgtctgcgtttagtgctagagctactatgcagcagaaaattgaatttattttcaaggtatatgattcagaccgcaatggaaaggtgtctttcaatgatatattagaagtgctccgggatatgtctggttcatttatgtctgacgagcaaagagagaaagtgttgacccaagtcttgcaagaatcaggatattcaaggggagcttatttgacattagatgacttcagtaaggttcttggcggtcatggcctaaaaatggaggttgaggtgccaattgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

175

Amino Acids

19.95

Weight (kDa)

4.92

Isoelectric Point (pI)

41.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18430 AT3G18430 AT3G18430
fragaria_vesca	FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_6g29301 FvH4_6g29301
malus_domestica	MD02G1005100.v1.1 MD17G1216100.v1.1
prunus_persica	Prupe.3G092200_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1
pyrus_communis	pycom02g00390 pycom15g13350 pycom17g22070
rosa_chinensis	RchiOBHm_Chr2g0085251 RchiOBHm_Chr2g0134491
rosa_laevigata	RLG00000015671 RLG00000019396 RLG00000019398
rosa_multiflora	Rmu_sc0005464.1_g000027
rosa_roxburghii	Rroxscaffold_2G00110170 Rroxscaffold_2G00155520
rosa_rugosa	Rorug01G0458600 Rorug01G0458600 Rorug02G0317500 Rorug02G0317600 Rorug02G0317700
rosa_samantha	Rh2AG007300 Rh2AG375600 Rh2BG007900 Rh2CG008700 Rh2CG354100 Rh2DG009000 Rh2DG393200
rosa_wichuraiana	Rw2G000690 Rw2G030150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	514
AciI	CCGC	2 cut(s)	319, 486
AclWI	GGATC	1 cut(s)	126
AcsI	RAATTY	2 cut(s)	152, 290
AcuI	CTGAAG	1 cut(s)	454
AfaI	GTAC	3 cut(s)	10, 48, 165
AfiI	CCNNNNNNNGG	1 cut(s)	502
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	6 cut(s)	41, 223, 290, 301, 340, 441
AluBI	AGCT	3 cut(s)	115, 269, 449
AluI	AGCT	3 cut(s)	115, 269, 449
Alw21I	GWGCWC	2 cut(s)	57, 360
AlwI	GGATC	1 cut(s)	126
AlwNI	CAGNNNCTG	1 cut(s)	199
Ama87I	CYCGRG	1 cut(s)	167
AoxI	GGCC	1 cut(s)	493
ApeKI	GCWGC	2 cut(s)	199, 277
ApoI	RAATTY	2 cut(s)	152, 290
AsuC2I	CCSGG	1 cut(s)	362
AvaI	CYCGRG	1 cut(s)	167
BanI	GGYRCC	1 cut(s)	514
Bbv12I	GWGCWC	2 cut(s)	57, 360
BbvI	GCAGC	2 cut(s)	186, 289
BccI	CCATC	1 cut(s)	202
BciVI	GTATCC	1 cut(s)	100
BcnI	CCSGG	1 cut(s)	362
BfaI	CTAG	1 cut(s)	264
BfrI	CTTAAG	1 cut(s)	203
BfuI	GTATCC	1 cut(s)	100
BisI	GCNGC	2 cut(s)	200, 278
BlsI	GCNGC	2 cut(s)	201, 279
Bme1390I	CCNGG	1 cut(s)	362
BmeT110I	CYCGRG	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	516
BmrFI	CCNGG	1 cut(s)	362
BmsI	GCATC	1 cut(s)	9
BoxI	GACNNNNGTC	1 cut(s)	416
BpuMI	CCSGG	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	1 cut(s)	502
Bse3DI	GCAATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	1 cut(s)	502
BseMI	GCAATG	1 cut(s)	328
BseMII	CTCAG	2 cut(s)	41, 206
BseXI	GCAGC	2 cut(s)	186, 289
BseYI	CCCAGC	1 cut(s)	75
BshFI	GGCC	1 cut(s)	495
BshNI	GGYRCC	1 cut(s)	514
BsiHKAI	GWGCWC	2 cut(s)	57, 360
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	361
BslI	CCNNNNNNNGG	1 cut(s)	502
BsmI	GAATGC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	495
BsoBI	CYCGRG	1 cut(s)	167
Bsp1286I	GDGCHC	2 cut(s)	57, 360
Bsp143I	GATC	1 cut(s)	118
BspACI	CCGC	2 cut(s)	319, 486
BspANI	GGCC	1 cut(s)	495
BspCNI	CTCAG	2 cut(s)	40, 205
BspLI	GGNNCC	1 cut(s)	516
BspPI	GGATC	1 cut(s)	126
BspT107I	GGYRCC	1 cut(s)	514
BspTI	CTTAAG	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	328
BssMI	GATC	1 cut(s)	118
BstAFI	CTTAAG	1 cut(s)	203
BstDEI	CTNAG	2 cut(s)	27, 192
BstKTI	GATC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	118
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 492
BstPAI	GACNNNNGTC	1 cut(s)	416
BstSCI	CCNGG	1 cut(s)	360
BstV1I	GCAGC	2 cut(s)	186, 289
BsuI	GTATCC	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	495
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	55
CaiI	CAGNNNCTG	1 cut(s)	199
Csp6I	GTAC	3 cut(s)	9, 47, 164
CviAII	CATG	1 cut(s)	491
CviJI	RGCY	6 cut(s)	115, 199, 242, 269, 449, 495
CviKI_1	RGCY	6 cut(s)	115, 199, 242, 269, 449, 495
CviQI	GTAC	3 cut(s)	9, 47, 164
DdeI	CTNAG	2 cut(s)	27, 192
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	454
Eco88I	CYCGRG	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	152
FaeI	CATG	1 cut(s)	494
FalI	AAGNNNNNCTT	2 cut(s)	433, 465
FatI	CATG	1 cut(s)	490
Fnu4HI	GCNGC	2 cut(s)	200, 278
Fsp4HI	GCNGC	2 cut(s)	200, 278
FspBI	CTAG	1 cut(s)	264
GluI	GCNGC	2 cut(s)	200, 278
GsaI	CCCAGC	1 cut(s)	79
HaeIII	GGCC	1 cut(s)	495
HapII	CCGG	1 cut(s)	361
Hin1II	CATG	1 cut(s)	494
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HinfI	GANTC	3 cut(s)	181, 311, 428
HpaII	CCGG	1 cut(s)	361
Hpy166II	GTNNAC	1 cut(s)	411
Hpy188I	TCNGA	5 cut(s)	123, 148, 195, 316, 388
Hpy188III	TCNNGA	1 cut(s)	432
Hpy8I	GTNNAC	1 cut(s)	411
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	209
HpyCH4V	TGCA	3 cut(s)	128, 277, 424
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 492
HpyF3I	CTNAG	2 cut(s)	27, 192
Hsp92II	CATG	1 cut(s)	494
Kzo9I	GATC	1 cut(s)	118
LmnI	GCTCC	3 cut(s)	52, 363, 446
LpnPI	CCDG	6 cut(s)	35, 89, 101, 357, 374, 417
Lsp1109I	GCAGC	2 cut(s)	186, 289
LweI	GCATC	1 cut(s)	9
MaeI	CTAG	1 cut(s)	264
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	1 cut(s)	53
MfeI	CAATTG	1 cut(s)	519
MhlI	GDGCHC	2 cut(s)	57, 360
MluCI	AATT	6 cut(s)	64, 84, 152, 285, 290, 519
MnlI	CCTC	4 cut(s)	22, 189, 499, 505
MseI	TTAA	2 cut(s)	204, 228
MspA1I	CMGCKG	1 cut(s)	115
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	1 cut(s)	361
MspR9I	CCNGG	1 cut(s)	362
MunI	CAATTG	1 cut(s)	519
Mva1269I	GAATGC	1 cut(s)	130
MwoI	GCNNNNNNNGC	2 cut(s)	260, 492
NciI	CCSGG	1 cut(s)	362
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	1 cut(s)	494
NlaIV	GGNNCC	1 cut(s)	516
PctI	GAATGC	1 cut(s)	130
PfeI	GAWTC	3 cut(s)	181, 311, 428
PfoI	TCCNGGA	1 cut(s)	360
PkrI	GCNGC	2 cut(s)	201, 279
PshAI	GACNNNNGTC	1 cut(s)	416
PspFI	CCCAGC	1 cut(s)	75
PspN4I	GGNNCC	1 cut(s)	516
PstNI	CAGNNNCTG	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	115
RsaI	GTAC	3 cut(s)	10, 48, 165
RsaNI	GTAC	3 cut(s)	9, 47, 164
SaqAI	TTAA	2 cut(s)	204, 228
SatI	GCNGC	2 cut(s)	200, 278
Sau3AI	GATC	1 cut(s)	118
ScrFI	CCNGG	1 cut(s)	362
SduI	GDGCHC	2 cut(s)	57, 360
SfaNI	GCATC	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	6 cut(s)	64, 84, 152, 285, 290, 519
SsiI	CCGC	2 cut(s)	319, 486
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	360
TaqI	TCGA	1 cut(s)	17
TasI	AATT	6 cut(s)	64, 84, 152, 285, 290, 519
TatI	WGTACW	1 cut(s)	46
TfiI	GAWTC	3 cut(s)	181, 311, 428
Tru1I	TTAA	2 cut(s)	204, 228
Tru9I	TTAA	2 cut(s)	204, 228
TscAI	CASTG	1 cut(s)	62
TseI	GCWGC	2 cut(s)	199, 277
TspDTI	ATGAA	3 cut(s)	127, 165, 366
TspRI	CASTG	1 cut(s)	62
Vha464I	CTTAAG	1 cut(s)	203
XapI	RAATTY	2 cut(s)	152, 290
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.