Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002587

Physical Location & Seq

Genomic Coordinates Reverse (-)

244676 .. 246696

Gene Structure 2021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g00390.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGGCAACACATCCTCGATGCTCACGCAGTACGACATCGAAGAAGTCCAGGAGCACTGTAACAACACATTTTCCCAGCAGGAGATAGTTTCTCTGTACCAGCGGTTCTGTCAGCTCGATCGCAGCGGCGGAGGTTTTATCTCCGCCGATGAGTTCTTGTCCGTTCCCGAATTCGCCGTCAATCCTCTCTCTCAGAGATTGCTGAAGATATTGGATGGATTGAACTTTAAGGAGTTCGTATTGTTCTTATCAGCATTCAGTTCTCTTATTTTTAAGGTATATGATTCAGACGGTCATGGGAAAGTCGCATTCAGCAACATGTTGGATGTTTTGCGGGATTTGACGGGGCAGTTCATATCTGAGCAACAGAGGGAGCAAGTATTGACACATGTCCTTGAGGAATCAGGCTATACAAAGGATTCATTGTTAAGCATATCGGACTTTGTGAAGACTCTTGGCAACTCTGAATTGAAGATGGAGGTCGAGGTTCCTGTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_7

Protein Analysis

167

Amino Acids

18.75

Weight (kDa)

4.49

Isoelectric Point (pI)

35.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18430 AT3G18430 AT3G18430
fragaria_vesca	FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_6g29301 FvH4_6g29301
malus_domestica	MD02G1005100.v1.1 MD17G1216100.v1.1
prunus_persica	Prupe.3G092200_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1
pyrus_communis	pycom02g00390 pycom15g13350 pycom17g22070
rosa_chinensis	RchiOBHm_Chr2g0085251 RchiOBHm_Chr2g0134491
rosa_laevigata	RLG00000015671 RLG00000019396 RLG00000019398
rosa_multiflora	Rmu_sc0005464.1_g000027
rosa_roxburghii	Rroxscaffold_2G00110170 Rroxscaffold_2G00155520
rosa_rugosa	Rorug01G0458600 Rorug01G0458600 Rorug02G0317500 Rorug02G0317600 Rorug02G0317700
rosa_samantha	Rh2AG007300 Rh2AG375600 Rh2BG007900 Rh2CG008700 Rh2CG354100 Rh2DG009000 Rh2DG393200
rosa_wichuraiana	Rw2G000690 Rw2G030150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	103, 126, 129, 144, 334
AcsI	RAATTY	1 cut(s)	170
AcuI	CTGAAG	1 cut(s)	224
AfaI	GTAC	2 cut(s)	32, 98
AflIII	ACRYGT	2 cut(s)	318, 388
AgsI	TTSAA	2 cut(s)	223, 472
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
Alw21I	GWGCWC	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	123
ApoI	RAATTY	1 cut(s)	170
ArsI	GACNNNNNNTTYG	2 cut(s)	162, 194
BbsI	GAAGAC	1 cut(s)	455
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	135
BccI	CCATC	2 cut(s)	209, 469
BceAI	ACGGC	1 cut(s)	161
BciT130I	CCWGG	1 cut(s)	50
BisI	GCNGC	2 cut(s)	124, 127
BlsI	GCNGC	2 cut(s)	125, 128
Bme1390I	CCNGG	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	489
BmrFI	CCNGG	1 cut(s)	50
BmsI	GCATC	1 cut(s)	9
BoxI	GACNNNNGTC	1 cut(s)	389
BpiI	GAAGAC	1 cut(s)	455
BpuEI	CTTGAG	1 cut(s)	416
BseBI	CCWGG	1 cut(s)	50
BseGI	GGATG	3 cut(s)	11, 220, 331
BseMII	CTCAG	2 cut(s)	206, 351
BseXI	GCAGC	1 cut(s)	135
BseYI	CCCAGC	1 cut(s)	75
Bsh1285I	CGRYCG	1 cut(s)	121
BsiEI	CGRYCG	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	57
BsmI	GAATGC	2 cut(s)	254, 308
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	1 cut(s)	118
BspACI	CCGC	5 cut(s)	103, 126, 129, 144, 334
BspCNI	CTCAG	2 cut(s)	205, 352
BspLI	GGNNCC	1 cut(s)	489
BssMI	GATC	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	2 cut(s)	59, 293
BstDEI	CTNAG	2 cut(s)	192, 360
BstF5I	GGATG	3 cut(s)	11, 220, 331
BstKTI	GATC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	118
BstMCI	CGRYCG	1 cut(s)	121
BstNI	CCWGG	1 cut(s)	50
BstNSI	RCATGY	2 cut(s)	322, 392
BstPAI	GACNNNNGTC	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	135
BstV2I	GAAGAC	1 cut(s)	455
BtsCI	GGATG	3 cut(s)	11, 220, 331
BtsIMutI	CAGTG	1 cut(s)	55
Csp6I	GTAC	2 cut(s)	31, 97
CviAII	CATG	3 cut(s)	296, 319, 389
CviJI	RGCY	2 cut(s)	115, 408
CviKI_1	RGCY	2 cut(s)	115, 408
CviQI	GTAC	2 cut(s)	31, 97
DdeI	CTNAG	2 cut(s)	192, 360
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
EciI	GGCGGA	2 cut(s)	133, 144
Eco57I	CTGAAG	1 cut(s)	224
EcoRI	GAATTC	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	48
FaeI	CATG	3 cut(s)	299, 322, 392
FaiI	YATR	8 cut(s)	280, 282, 297, 320, 356, 390, 411, 434
FatI	CATG	3 cut(s)	295, 318, 388
FauI	CCCGC	1 cut(s)	327
Fnu4HI	GCNGC	2 cut(s)	124, 127
FokI	GGATG	2 cut(s)	227, 338
Fsp4HI	GCNGC	2 cut(s)	124, 127
GluI	GCNGC	2 cut(s)	124, 127
GsaI	CCCAGC	1 cut(s)	79
Hin1II	CATG	3 cut(s)	299, 322, 392
HinfI	GANTC	4 cut(s)	284, 401, 419, 451
Hpy188I	TCNGA	5 cut(s)	195, 289, 361, 439, 466
Hpy188III	TCNNGA	1 cut(s)	167
HpyCH4III	ACNGT	2 cut(s)	59, 293
HpyF3I	CTNAG	2 cut(s)	192, 360
Hsp92II	CATG	3 cut(s)	299, 322, 392
Kzo9I	GATC	1 cut(s)	118
LmnI	GCTCC	2 cut(s)	52, 373
LpnPI	CCDG	6 cut(s)	35, 62, 65, 89, 113, 390
Lsp1109I	GCAGC	1 cut(s)	135
LweI	GCATC	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	4 cut(s)	53, 217, 460, 484
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	2 cut(s)	170, 467
MlyI	GAGTC	1 cut(s)	445
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	7 cut(s)	25, 125, 195, 363, 391, 472, 478
MseI	TTAA	3 cut(s)	228, 273, 428
MspA1I	CMGCKG	2 cut(s)	103, 126
MspR9I	CCNGG	1 cut(s)	50
Mva1269I	GAATGC	2 cut(s)	254, 308
MvaI	CCWGG	1 cut(s)	50
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	3 cut(s)	299, 322, 392
NlaIV	GGNNCC	1 cut(s)	489
NspI	RCATGY	2 cut(s)	322, 392
PciI	ACATGT	2 cut(s)	318, 388
PctI	GAATGC	2 cut(s)	254, 308
PfeI	GAWTC	3 cut(s)	284, 401, 419
PfoI	TCCNGGA	1 cut(s)	48
PkrI	GCNGC	2 cut(s)	125, 128
Ple19I	CGATCG	1 cut(s)	121
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
PscI	ACATGT	2 cut(s)	318, 388
PshAI	GACNNNNGTC	1 cut(s)	389
Psp6I	CCWGG	1 cut(s)	48
PspFI	CCCAGC	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	489
PsrI	GAACNNNNNNTAC	2 cut(s)	89, 121
PvuI	CGATCG	1 cut(s)	121
RsaI	GTAC	2 cut(s)	32, 98
RsaNI	GTAC	2 cut(s)	31, 97
SaqAI	TTAA	3 cut(s)	228, 273, 428
SatI	GCNGC	2 cut(s)	124, 127
Sau3AI	GATC	1 cut(s)	118
SchI	GAGTC	1 cut(s)	445
ScrFI	CCNGG	1 cut(s)	50
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	5 cut(s)	117, 136, 279, 483, 489
SfaNI	GCATC	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	2 cut(s)	170, 467
SsiI	CCGC	5 cut(s)	103, 126, 129, 144, 334
StyD4I	CCNGG	1 cut(s)	48
TaaI	ACNGT	2 cut(s)	59, 293
TaqI	TCGA	4 cut(s)	17, 39, 117, 483
TasI	AATT	2 cut(s)	170, 467
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	3 cut(s)	284, 401, 419
Tru1I	TTAA	3 cut(s)	228, 273, 428
Tru9I	TTAA	3 cut(s)	228, 273, 428
TscAI	CASTG	1 cut(s)	62
TseI	GCWGC	1 cut(s)	123
TspDTI	ATGAA	2 cut(s)	343, 411
TspGWI	ACGGA	1 cut(s)	151
TspRI	CASTG	1 cut(s)	62
XapI	RAATTY	1 cut(s)	170
XceI	RCATGY	2 cut(s)	322, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.