Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002587

Physical Location & Seq

Genomic Coordinates Forward (+)

34394918 .. 34399025

Gene Structure 4108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00110170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGGAAGTACCTCATCGATGCTAACTCAGTATGACATTGAAGAAGTACAGGAGCACTGCCATAATCTATTAATGCTAATACGTGATCTGATTTTGCTTTCAAAATCAGTTTCCCAGCAAGAAATTGTATCTTTGTATAAAAGATTTTGTCAGCTTGATCGGAATGCAAAGGGTTTCATCTCATCTGATGAATTCTTATCAGTACCCGAGTTAGCAACGAATCCCATATCTCAGAGGCTGCTTAAGATGGTGGAAGGTTTGAACTTTAAGGACTTTGTGGCTTTCTTGTCTGCGTTTAGTGCTAGAGCTACTACGCAGCAGAAAATTGAATTTATTTTCAAGGTATATGATTCAGACCGCAATGGAAAGGTGTCTTTCAATGATATATTAGAAGTGCTCCGGGATATGTCTGGTTCGTTTATGTCTGATGAGCAAAGAGAGAAAGTGTTGACCCAAGTCTTGCAAGAATCAGGATATTCTAGGGGATCTTATTTGACATTAGATGACTTCAGTAAGGTTCTTGGCGGTCATGGCCTAAAAATGGAGGTTGAGGTGCCAATTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

188

Amino Acids

21.38

Weight (kDa)

5.04

Isoelectric Point (pI)

40.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	44 - 133	1.8e-08	EF-hand domain pair
EF-hand_7	PF13499	107 - 173	4e-06	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18430 AT3G18430 AT3G18430
fragaria_vesca	FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_6g29301 FvH4_6g29301
malus_domestica	MD02G1005100.v1.1 MD17G1216100.v1.1
prunus_persica	Prupe.3G092200_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1
pyrus_communis	pycom02g00390 pycom15g13350 pycom17g22070
rosa_chinensis	RchiOBHm_Chr2g0085251 RchiOBHm_Chr2g0134491
rosa_laevigata	RLG00000015671 RLG00000019396 RLG00000019398
rosa_multiflora	Rmu_sc0005464.1_g000027
rosa_roxburghii	Rroxscaffold_2G00110170 Rroxscaffold_2G00155520
rosa_rugosa	Rorug01G0458600 Rorug01G0458600 Rorug02G0317500 Rorug02G0317600 Rorug02G0317700
rosa_samantha	Rh2AG007300 Rh2AG375600 Rh2BG007900 Rh2CG008700 Rh2CG354100 Rh2DG009000 Rh2DG393200
rosa_wichuraiana	Rw2G000690 Rw2G030150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	553
AciI	CCGC	2 cut(s)	358, 525
AclWI	GGATC	1 cut(s)	493
AcsI	RAATTY	2 cut(s)	191, 329
AcuI	CTGAAG	1 cut(s)	493
AfaI	GTAC	3 cut(s)	10, 48, 204
AfiI	CCNNNNNNNGG	1 cut(s)	541
AflII	CTTAAG	1 cut(s)	242
AgsI	TTSAA	6 cut(s)	41, 102, 262, 329, 340, 379
AluBI	AGCT	2 cut(s)	154, 308
AluI	AGCT	2 cut(s)	154, 308
Alw21I	GWGCWC	2 cut(s)	57, 399
AlwI	GGATC	1 cut(s)	493
AlwNI	CAGNNNCTG	1 cut(s)	238
Ama87I	CYCGRG	1 cut(s)	206
AoxI	GGCC	1 cut(s)	532
ApeKI	GCWGC	2 cut(s)	238, 316
ApoI	RAATTY	2 cut(s)	191, 329
AseI	ATTAAT	1 cut(s)	71
AsuC2I	CCSGG	1 cut(s)	401
AvaI	CYCGRG	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	553
Bbv12I	GWGCWC	2 cut(s)	57, 399
BbvI	GCAGC	2 cut(s)	225, 328
BccI	CCATC	1 cut(s)	241
BcnI	CCSGG	1 cut(s)	401
BfaI	CTAG	2 cut(s)	303, 480
BfrI	CTTAAG	1 cut(s)	242
BisI	GCNGC	2 cut(s)	239, 317
BlsI	GCNGC	2 cut(s)	240, 318
Bme1390I	CCNGG	1 cut(s)	401
BmeT110I	CYCGRG	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	555
BmrFI	CCNGG	1 cut(s)	401
BmsI	GCATC	1 cut(s)	9
BoxI	GACNNNNGTC	1 cut(s)	455
BpuMI	CCSGG	1 cut(s)	401
Bsa29I	ATCGAT	1 cut(s)	17
BsaAI	YACGTR	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	1 cut(s)	541
Bse3DI	GCAATG	1 cut(s)	367
BseCI	ATCGAT	1 cut(s)	17
BseLI	CCNNNNNNNGG	1 cut(s)	541
BseMI	GCAATG	1 cut(s)	367
BseMII	CTCAG	2 cut(s)	41, 245
BseXI	GCAGC	2 cut(s)	225, 328
BseYI	CCCAGC	1 cut(s)	114
BshFI	GGCC	1 cut(s)	534
BshNI	GGYRCC	1 cut(s)	553
BshVI	ATCGAT	1 cut(s)	17
BsiHKAI	GWGCWC	2 cut(s)	57, 399
BsiHKCI	CYCGRG	1 cut(s)	206
BsiSI	CCGG	1 cut(s)	400
BslI	CCNNNNNNNGG	1 cut(s)	541
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	534
BsoBI	CYCGRG	1 cut(s)	206
Bsp1286I	GDGCHC	2 cut(s)	57, 399
Bsp143I	GATC	3 cut(s)	85, 157, 485
BspACI	CCGC	2 cut(s)	358, 525
BspANI	GGCC	1 cut(s)	534
BspCNI	CTCAG	2 cut(s)	40, 244
BspDI	ATCGAT	1 cut(s)	17
BspLI	GGNNCC	1 cut(s)	555
BspPI	GGATC	1 cut(s)	493
BspT107I	GGYRCC	1 cut(s)	553
BspTI	CTTAAG	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	367
BssMI	GATC	3 cut(s)	85, 157, 485
BstAFI	CTTAAG	1 cut(s)	242
BstBAI	YACGTR	1 cut(s)	83
BstDEI	CTNAG	2 cut(s)	27, 231
BstKTI	GATC	3 cut(s)	88, 160, 488
BstMBI	GATC	3 cut(s)	85, 157, 485
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 531
BstPAI	GACNNNNGTC	1 cut(s)	455
BstSCI	CCNGG	1 cut(s)	399
BstV1I	GCAGC	2 cut(s)	225, 328
BstX2I	RGATCY	1 cut(s)	485
BstYI	RGATCY	1 cut(s)	485
Bsu15I	ATCGAT	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	534
BsuTUI	ATCGAT	1 cut(s)	17
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	55
CaiI	CAGNNNCTG	1 cut(s)	238
ClaI	ATCGAT	1 cut(s)	17
Csp6I	GTAC	3 cut(s)	9, 47, 203
CviAII	CATG	1 cut(s)	530
CviJI	RGCY	5 cut(s)	154, 238, 281, 308, 534
CviKI_1	RGCY	5 cut(s)	154, 238, 281, 308, 534
CviQI	GTAC	3 cut(s)	9, 47, 203
DdeI	CTNAG	2 cut(s)	27, 231
DpnI	GATC	3 cut(s)	87, 159, 487
DpnII	GATC	3 cut(s)	85, 157, 485
Eco57I	CTGAAG	1 cut(s)	493
Eco88I	CYCGRG	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	191
FaeI	CATG	1 cut(s)	533
FatI	CATG	1 cut(s)	529
Fnu4HI	GCNGC	2 cut(s)	239, 317
Fsp4HI	GCNGC	2 cut(s)	239, 317
FspBI	CTAG	2 cut(s)	303, 480
GluI	GCNGC	2 cut(s)	239, 317
GsaI	CCCAGC	1 cut(s)	118
HaeIII	GGCC	1 cut(s)	534
HapII	CCGG	1 cut(s)	400
Hin1II	CATG	1 cut(s)	533
HincII	GTYRAC	1 cut(s)	450
HindII	GTYRAC	1 cut(s)	450
HinfI	GANTC	3 cut(s)	220, 350, 467
HpaII	CCGG	1 cut(s)	400
Hpy166II	GTNNAC	1 cut(s)	450
Hpy188I	TCNGA	6 cut(s)	90, 162, 187, 234, 355, 427
Hpy188III	TCNNGA	1 cut(s)	471
Hpy8I	GTNNAC	1 cut(s)	450
HpyAV	CCTTC	1 cut(s)	248
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	2 cut(s)	167, 463
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 531
HpyF3I	CTNAG	2 cut(s)	27, 231
HpySE526I	ACGT	1 cut(s)	82
Hsp92II	CATG	1 cut(s)	533
Kzo9I	GATC	3 cut(s)	85, 157, 485
LmnI	GCTCC	2 cut(s)	52, 402
LpnPI	CCDG	5 cut(s)	35, 128, 396, 413, 456
Lsp1109I	GCAGC	2 cut(s)	225, 328
LweI	GCATC	1 cut(s)	9
MaeI	CTAG	2 cut(s)	303, 480
MaeII	ACGT	1 cut(s)	82
MalI	GATC	3 cut(s)	87, 159, 487
MboI	GATC	3 cut(s)	85, 157, 485
MboII	GAAGA	1 cut(s)	53
MfeI	CAATTG	1 cut(s)	558
MflI	RGATCY	1 cut(s)	485
MhlI	GDGCHC	2 cut(s)	57, 399
MluCI	AATT	5 cut(s)	123, 191, 324, 329, 558
MnlI	CCTC	4 cut(s)	22, 228, 538, 544
MseI	TTAA	3 cut(s)	71, 243, 267
MspCI	CTTAAG	1 cut(s)	242
MspI	CCGG	1 cut(s)	400
MspR9I	CCNGG	1 cut(s)	401
MunI	CAATTG	1 cut(s)	558
Mva1269I	GAATGC	1 cut(s)	169
MwoI	GCNNNNNNNGC	2 cut(s)	299, 531
NciI	CCSGG	1 cut(s)	401
NdeII	GATC	3 cut(s)	85, 157, 485
NlaIII	CATG	1 cut(s)	533
NlaIV	GGNNCC	1 cut(s)	555
PctI	GAATGC	1 cut(s)	169
PfeI	GAWTC	3 cut(s)	220, 350, 467
PfoI	TCCNGGA	1 cut(s)	399
PkrI	GCNGC	2 cut(s)	240, 318
Ppu21I	YACGTR	1 cut(s)	83
PshAI	GACNNNNGTC	1 cut(s)	455
PshBI	ATTAAT	1 cut(s)	71
PspFI	CCCAGC	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	555
PstNI	CAGNNNCTG	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	485
RsaI	GTAC	3 cut(s)	10, 48, 204
RsaNI	GTAC	3 cut(s)	9, 47, 203
SaqAI	TTAA	3 cut(s)	71, 243, 267
SatI	GCNGC	2 cut(s)	239, 317
Sau3AI	GATC	3 cut(s)	85, 157, 485
ScrFI	CCNGG	1 cut(s)	401
SduI	GDGCHC	2 cut(s)	57, 399
SfaNI	GCATC	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	5 cut(s)	123, 191, 324, 329, 558
SsiI	CCGC	2 cut(s)	358, 525
SspMI	CTAG	2 cut(s)	303, 480
StyD4I	CCNGG	1 cut(s)	399
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	1 cut(s)	17
TasI	AATT	5 cut(s)	123, 191, 324, 329, 558
TatI	WGTACW	1 cut(s)	46
TfiI	GAWTC	3 cut(s)	220, 350, 467
Tru1I	TTAA	3 cut(s)	71, 243, 267
Tru9I	TTAA	3 cut(s)	71, 243, 267
TscAI	CASTG	1 cut(s)	62
TseI	GCWGC	2 cut(s)	238, 316
TspDTI	ATGAA	2 cut(s)	166, 204
TspRI	CASTG	1 cut(s)	62
Vha464I	CTTAAG	1 cut(s)	242
VspI	ATTAAT	1 cut(s)	71
XapI	RAATTY	2 cut(s)	191, 329
XspI	CTAG	2 cut(s)	303, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.