Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002587

Physical Location & Seq

Genomic Coordinates Forward (+)

20483280 .. 20486199

Gene Structure 2920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g22070.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGGGAATGCCTCTTCCATGCTAACTCAGTACGACATTGAAGAAGTCCAAGAACACTGCAACTTTTTATTTTCTCAGCAAGAAATTGTATCCTTGTATCAAAGATTTTGTCAACTAGACAGGAATGCAAAGGGTTTTATCTCGGCTGATGAATTCCTATCGGTCCCCGAGTTTGCGATGAATCCACTCTCTCAGAGGTTGCTTAAGATGGTCGATGGGTTGAACTTTAAGGACTTTGTGGCCTTCTTGTCTGCGTTCAGCGCTAGAGCCAGTATGCAGCAAAAAAGTGAACTTATTTTCAGGGTATACGACTCAGACTGTTGTGGAAAGGTGTCTTTCAATGATATTTTAGAAGTGCTGCGTGATTTGTCGGGTTCATTCCTGTCTGACGAGCAAAGAGAGAAAGTGTTGACTCAAGTCCTGCAAGAAGCAGGGTATACAAGGGAATCTTATTTGACGTCAGATGACTTTGTTAAGGTTCTTGGTAGTTATGGTCTGAAAATGGAGGTTGAAGTGCCAATCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

176

Amino Acids

19.97

Weight (kDa)

4.53

Isoelectric Point (pI)

28.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18430 AT3G18430 AT3G18430
fragaria_vesca	FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_6g29301 FvH4_6g29301
malus_domestica	MD02G1005100.v1.1 MD17G1216100.v1.1
prunus_persica	Prupe.3G092200_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1
pyrus_communis	pycom02g00390 pycom15g13350 pycom17g22070
rosa_chinensis	RchiOBHm_Chr2g0085251 RchiOBHm_Chr2g0134491
rosa_laevigata	RLG00000015671 RLG00000019396 RLG00000019398
rosa_multiflora	Rmu_sc0005464.1_g000027
rosa_roxburghii	Rroxscaffold_2G00110170 Rroxscaffold_2G00155520
rosa_rugosa	Rorug01G0458600 Rorug01G0458600 Rorug02G0317500 Rorug02G0317600 Rorug02G0317700
rosa_samantha	Rh2AG007300 Rh2AG375600 Rh2BG007900 Rh2CG008700 Rh2CG354100 Rh2DG009000 Rh2DG393200
rosa_wichuraiana	Rw2G000690 Rw2G030150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	461
AccI	GTMKAC	2 cut(s)	306, 437
AcsI	RAATTY	1 cut(s)	152
AcyI	GRCGYC	1 cut(s)	458
AfaI	GTAC	1 cut(s)	32
AfeI	AGCGCT	1 cut(s)	262
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	4 cut(s)	41, 223, 340, 512
Ama87I	CYCGRG	1 cut(s)	167
Aor51HI	AGCGCT	1 cut(s)	262
AoxI	GGCC	1 cut(s)	240
ApeKI	GCWGC	2 cut(s)	277, 358
ApoI	RAATTY	1 cut(s)	152
ArsI	GACNNNNNNTTYG	2 cut(s)	94, 126
AspLEI	GCGC	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	163
AvaI	CYCGRG	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	163
BbvI	GCAGC	2 cut(s)	289, 345
BccI	CCATC	2 cut(s)	202, 209
BciVI	GTATCC	1 cut(s)	100
BfaI	CTAG	2 cut(s)	116, 264
BfoI	RGCGCY	1 cut(s)	264
BfrI	CTTAAG	1 cut(s)	203
BfuI	GTATCC	1 cut(s)	100
BisI	GCNGC	2 cut(s)	278, 359
BlsI	GCNGC	2 cut(s)	279, 360
Bme18I	GGWCC	1 cut(s)	163
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	1 cut(s)	165
BoxI	GACNNNNGTC	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	399
BsaHI	GRCGYC	1 cut(s)	458
Bse1I	ACTGG	1 cut(s)	270
BseMII	CTCAG	4 cut(s)	41, 89, 206, 327
BseNI	ACTGG	1 cut(s)	270
BseXI	GCAGC	2 cut(s)	289, 345
BshFI	GGCC	1 cut(s)	242
BsiHKCI	CYCGRG	1 cut(s)	167
BslFI	GGGAC	1 cut(s)	149
BsmFI	GGGAC	1 cut(s)	149
BsmI	GAATGC	2 cut(s)	13, 130
BsnI	GGCC	1 cut(s)	242
BsoBI	CYCGRG	1 cut(s)	167
BspANI	GGCC	1 cut(s)	242
BspCNI	CTCAG	4 cut(s)	40, 88, 205, 326
BspLI	GGNNCC	1 cut(s)	165
BspTI	CTTAAG	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	270
BssNAI	GTATAC	2 cut(s)	307, 438
BssNI	GRCGYC	1 cut(s)	458
Bst1107I	GTATAC	2 cut(s)	307, 438
Bst4CI	ACNGT	1 cut(s)	320
Bst6I	CTCTTC	1 cut(s)	19
BstACI	GRCGYC	1 cut(s)	458
BstAFI	CTTAAG	1 cut(s)	203
BstDEI	CTNAG	4 cut(s)	27, 75, 192, 313
BstH2I	RGCGCY	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	263
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstPAI	GACNNNNGTC	1 cut(s)	416
BstV1I	GCAGC	2 cut(s)	289, 345
BstZ17I	GTATAC	2 cut(s)	307, 438
BsuI	GTATCC	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	242
BtgZI	GCGATG	1 cut(s)	191
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	55
CfoI	GCGC	1 cut(s)	263
Cfr13I	GGNCC	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	3 cut(s)	146, 242, 269
CviKI_1	RGCY	3 cut(s)	146, 242, 269
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	4 cut(s)	27, 75, 192, 313
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	163
Eco47III	AGCGCT	1 cut(s)	262
Eco88I	CYCGRG	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	152
FaeI	CATG	1 cut(s)	22
FaiI	YATR	5 cut(s)	20, 275, 307, 438, 492
FalI	AAGNNNNNCTT	2 cut(s)	433, 465
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	1 cut(s)	18
FblI	GTMKAC	2 cut(s)	306, 437
Fnu4HI	GCNGC	2 cut(s)	278, 359
Fsp4HI	GCNGC	2 cut(s)	278, 359
FspBI	CTAG	2 cut(s)	116, 264
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	2 cut(s)	278, 359
HaeII	RGCGCY	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	242
HhaI	GCGC	1 cut(s)	263
Hin1I	GRCGYC	1 cut(s)	458
Hin1II	CATG	1 cut(s)	22
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HincII	GTYRAC	2 cut(s)	113, 411
HindII	GTYRAC	2 cut(s)	113, 411
HinfI	GANTC	4 cut(s)	181, 311, 412, 446
Hpy166II	GTNNAC	5 cut(s)	113, 290, 307, 411, 438
Hpy188I	TCNGA	5 cut(s)	195, 316, 388, 463, 498
Hpy8I	GTNNAC	5 cut(s)	113, 290, 307, 411, 438
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4IV	ACGT	1 cut(s)	458
HpyCH4V	TGCA	4 cut(s)	60, 128, 277, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	4 cut(s)	27, 75, 192, 313
HpySE526I	ACGT	1 cut(s)	458
Hsp92I	GRCGYC	1 cut(s)	458
Hsp92II	CATG	1 cut(s)	22
HspAI	GCGC	1 cut(s)	261
LpnPI	CCDG	6 cut(s)	106, 283, 286, 395, 417, 434
Lsp1109I	GCAGC	2 cut(s)	289, 345
MaeI	CTAG	2 cut(s)	116, 264
MaeII	ACGT	1 cut(s)	458
MboII	GAAGA	2 cut(s)	6, 53
MluCI	AATT	2 cut(s)	84, 152
MlyI	GAGTC	2 cut(s)	305, 406
MnlI	CCTC	3 cut(s)	22, 189, 499
MseI	TTAA	3 cut(s)	204, 228, 474
MspCI	CTTAAG	1 cut(s)	203
Mva1269I	GAATGC	2 cut(s)	13, 130
MwoI	GCNNNNNNNGC	1 cut(s)	260
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	1 cut(s)	165
NmeAIII	GCCGAG	1 cut(s)	122
PctI	GAATGC	2 cut(s)	13, 130
PfeI	GAWTC	2 cut(s)	181, 446
PkrI	GCNGC	2 cut(s)	279, 360
PleI	GAGTC	2 cut(s)	305, 406
PpsI	GAGTC	2 cut(s)	305, 406
PshAI	GACNNNNGTC	1 cut(s)	416
PspN4I	GGNNCC	1 cut(s)	165
PspPI	GGNCC	1 cut(s)	163
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SaqAI	TTAA	3 cut(s)	204, 228, 474
SatI	GCNGC	2 cut(s)	278, 359
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	2 cut(s)	305, 406
SetI	ASST	5 cut(s)	200, 333, 461, 480, 510
SinI	GGWCC	1 cut(s)	163
SmlI	CTYRAG	2 cut(s)	203, 414
SmoI	CTYRAG	2 cut(s)	203, 414
Sse9I	AATT	2 cut(s)	84, 152
SspMI	CTAG	2 cut(s)	116, 264
TaaI	ACNGT	1 cut(s)	320
TaiI	ACGT	1 cut(s)	461
TaqI	TCGA	2 cut(s)	213, 522
TaqII	GACCGA	1 cut(s)	151
TasI	AATT	2 cut(s)	84, 152
TfiI	GAWTC	2 cut(s)	181, 446
Tru1I	TTAA	3 cut(s)	204, 228, 474
Tru9I	TTAA	3 cut(s)	204, 228, 474
TscAI	CASTG	1 cut(s)	62
TseI	GCWGC	2 cut(s)	277, 358
TspDTI	ATGAA	3 cut(s)	165, 194, 366
TspRI	CASTG	1 cut(s)	62
Vha464I	CTTAAG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	163
XapI	RAATTY	1 cut(s)	152
XmiI	GTMKAC	2 cut(s)	306, 437
XspI	CTAG	2 cut(s)	116, 264
ZraI	GACGTC	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.