Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002587

Physical Location & Seq

Genomic Coordinates Forward (+)

26300862 .. 26306576

Gene Structure 5715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1216100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCTAACTCAGTACGACATTGAAGAAGTGCAAGAGCACTGCAACTTTTTATTTTCTCAGCAAGAAATTGTATCCTTGTATCAAAGATTTTGTCAACTAGATAGAAATGCAAAGGGTTTTATCTCAGCTGATGAATTCCTATCGGTCCCCGAGTTTGCGATGAATCCTCTCTCTCAGAGGTTGCTTAAGATGGTCGATGGGTTGAACTTTAAGGACTTTGTGGCCTTCTTGTCTGCGTTCAGCGCTAGAGCTAGTATGCAGCAAAAAAGTGAACTTATTTTCAGGGTATACGACTCAGACTGTAATGGAAAGGTGTCTTTCAATGATATTTTAGAAGTGCTGCGTGATTTGTCGGGTTCATTCCTGTCTGACGAGCAAAGAGAGAAAGTGTTGACTCAAGTCCTGCAAGAAGCAGGGTATACAAGGGAATCTTATTTGACGTCAGATGACTTTGTTAAGGTTCTTGGTAGTTATGGTCTGAAAATGGAGGTTGAAGTGCCAATCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

170

Amino Acids

19.43

Weight (kDa)

4.53

Isoelectric Point (pI)

27.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	25 - 114	9e-08	EF-hand domain pair
EF-hand_7	PF13499	93 - 154	5.3e-06	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18430 AT3G18430 AT3G18430
fragaria_vesca	FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_6g29301 FvH4_6g29301
malus_domestica	MD02G1005100.v1.1 MD17G1216100.v1.1
prunus_persica	Prupe.3G092200_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1
pyrus_communis	pycom02g00390 pycom15g13350 pycom17g22070
rosa_chinensis	RchiOBHm_Chr2g0085251 RchiOBHm_Chr2g0134491
rosa_laevigata	RLG00000015671 RLG00000019396 RLG00000019398
rosa_multiflora	Rmu_sc0005464.1_g000027
rosa_roxburghii	Rroxscaffold_2G00110170 Rroxscaffold_2G00155520
rosa_rugosa	Rorug01G0458600 Rorug01G0458600 Rorug02G0317500 Rorug02G0317600 Rorug02G0317700
rosa_samantha	Rh2AG007300 Rh2AG375600 Rh2BG007900 Rh2CG008700 Rh2CG354100 Rh2DG009000 Rh2DG393200
rosa_wichuraiana	Rw2G000690 Rw2G030150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	443
AccI	GTMKAC	2 cut(s)	288, 419
AcsI	RAATTY	1 cut(s)	134
AcyI	GRCGYC	1 cut(s)	440
AfaI	GTAC	1 cut(s)	14
AfeI	AGCGCT	1 cut(s)	244
AflII	CTTAAG	1 cut(s)	185
AgsI	TTSAA	4 cut(s)	23, 205, 322, 494
AluBI	AGCT	2 cut(s)	128, 251
AluI	AGCT	2 cut(s)	128, 251
Alw21I	GWGCWC	1 cut(s)	39
Ama87I	CYCGRG	1 cut(s)	149
Aor51HI	AGCGCT	1 cut(s)	244
AoxI	GGCC	1 cut(s)	222
ApeKI	GCWGC	2 cut(s)	259, 340
ApoI	RAATTY	1 cut(s)	134
ArsI	GACNNNNNNTTYG	2 cut(s)	76, 108
AspLEI	GCGC	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	145
AvaI	CYCGRG	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	2 cut(s)	271, 327
BccI	CCATC	2 cut(s)	184, 191
BciVI	GTATCC	1 cut(s)	82
BfaI	CTAG	3 cut(s)	98, 246, 252
BfoI	RGCGCY	1 cut(s)	246
BfrI	CTTAAG	1 cut(s)	185
BfuI	GTATCC	1 cut(s)	82
BisI	GCNGC	2 cut(s)	260, 341
BlsI	GCNGC	2 cut(s)	261, 342
Bme18I	GGWCC	1 cut(s)	145
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	147
BoxI	GACNNNNGTC	1 cut(s)	398
BpuEI	CTTGAG	1 cut(s)	381
BsaHI	GRCGYC	1 cut(s)	440
BseMII	CTCAG	5 cut(s)	23, 71, 138, 188, 309
BseXI	GCAGC	2 cut(s)	271, 327
BshFI	GGCC	1 cut(s)	224
BsiHKAI	GWGCWC	1 cut(s)	39
BsiHKCI	CYCGRG	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	224
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	39
BspANI	GGCC	1 cut(s)	224
BspCNI	CTCAG	5 cut(s)	22, 70, 137, 187, 308
BspLI	GGNNCC	1 cut(s)	147
BspTI	CTTAAG	1 cut(s)	185
BssNAI	GTATAC	2 cut(s)	289, 420
BssNI	GRCGYC	1 cut(s)	440
Bst1107I	GTATAC	2 cut(s)	289, 420
Bst4CI	ACNGT	1 cut(s)	302
BstACI	GRCGYC	1 cut(s)	440
BstAFI	CTTAAG	1 cut(s)	185
BstDEI	CTNAG	5 cut(s)	9, 57, 124, 174, 295
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	245
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstPAI	GACNNNNGTC	1 cut(s)	398
BstV1I	GCAGC	2 cut(s)	271, 327
BstZ17I	GTATAC	2 cut(s)	289, 420
BsuI	GTATCC	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	224
BtgZI	GCGATG	1 cut(s)	173
BtsI	GCAGTG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	37
CfoI	GCGC	1 cut(s)	245
Cfr13I	GGNCC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	13
CviJI	RGCY	3 cut(s)	128, 224, 251
CviKI_1	RGCY	3 cut(s)	128, 224, 251
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	5 cut(s)	9, 57, 124, 174, 295
Eco47I	GGWCC	1 cut(s)	145
Eco47III	AGCGCT	1 cut(s)	244
Eco88I	CYCGRG	1 cut(s)	149
EcoRI	GAATTC	1 cut(s)	134
FaiI	YATR	4 cut(s)	257, 289, 420, 474
FalI	AAGNNNNNCTT	2 cut(s)	415, 447
FaqI	GGGAC	1 cut(s)	131
FblI	GTMKAC	2 cut(s)	288, 419
Fnu4HI	GCNGC	2 cut(s)	260, 341
Fsp4HI	GCNGC	2 cut(s)	260, 341
FspBI	CTAG	3 cut(s)	98, 246, 252
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	2 cut(s)	260, 341
HaeII	RGCGCY	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	224
HhaI	GCGC	1 cut(s)	245
Hin1I	GRCGYC	1 cut(s)	440
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HincII	GTYRAC	2 cut(s)	95, 393
HindII	GTYRAC	2 cut(s)	95, 393
HinfI	GANTC	4 cut(s)	163, 293, 394, 428
Hpy166II	GTNNAC	5 cut(s)	95, 272, 289, 393, 420
Hpy188I	TCNGA	5 cut(s)	177, 298, 370, 445, 480
Hpy8I	GTNNAC	5 cut(s)	95, 272, 289, 393, 420
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4IV	ACGT	1 cut(s)	440
HpyCH4V	TGCA	5 cut(s)	31, 42, 110, 259, 406
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	5 cut(s)	9, 57, 124, 174, 295
HpySE526I	ACGT	1 cut(s)	440
Hsp92I	GRCGYC	1 cut(s)	440
HspAI	GCGC	1 cut(s)	243
LpnPI	CCDG	4 cut(s)	268, 377, 399, 416
Lsp1109I	GCAGC	2 cut(s)	271, 327
MaeI	CTAG	3 cut(s)	98, 246, 252
MaeII	ACGT	1 cut(s)	440
MboII	GAAGA	1 cut(s)	35
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	2 cut(s)	66, 134
MlyI	GAGTC	2 cut(s)	287, 388
MnlI	CCTC	3 cut(s)	171, 177, 481
MseI	TTAA	3 cut(s)	186, 210, 456
MspA1I	CMGCKG	1 cut(s)	128
MspCI	CTTAAG	1 cut(s)	185
MwoI	GCNNNNNNNGC	1 cut(s)	242
NlaIV	GGNNCC	1 cut(s)	147
PfeI	GAWTC	2 cut(s)	163, 428
PkrI	GCNGC	2 cut(s)	261, 342
PleI	GAGTC	2 cut(s)	287, 388
PpsI	GAGTC	2 cut(s)	287, 388
PshAI	GACNNNNGTC	1 cut(s)	398
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	128
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SaqAI	TTAA	3 cut(s)	186, 210, 456
SatI	GCNGC	2 cut(s)	260, 341
Sau96I	GGNCC	1 cut(s)	145
SchI	GAGTC	2 cut(s)	287, 388
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	7 cut(s)	130, 182, 253, 315, 443, 462, 492
SinI	GGWCC	1 cut(s)	145
SmlI	CTYRAG	2 cut(s)	185, 396
SmoI	CTYRAG	2 cut(s)	185, 396
Sse9I	AATT	2 cut(s)	66, 134
SspMI	CTAG	3 cut(s)	98, 246, 252
TaaI	ACNGT	1 cut(s)	302
TaiI	ACGT	1 cut(s)	443
TaqI	TCGA	2 cut(s)	195, 504
TaqII	GACCGA	1 cut(s)	133
TasI	AATT	2 cut(s)	66, 134
TfiI	GAWTC	2 cut(s)	163, 428
Tru1I	TTAA	3 cut(s)	186, 210, 456
Tru9I	TTAA	3 cut(s)	186, 210, 456
TscAI	CASTG	1 cut(s)	44
TseI	GCWGC	2 cut(s)	259, 340
TspDTI	ATGAA	3 cut(s)	147, 176, 348
TspRI	CASTG	1 cut(s)	44
Vha464I	CTTAAG	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	1 cut(s)	134
XmiI	GTMKAC	2 cut(s)	288, 419
XspI	CTAG	3 cut(s)	98, 246, 252
ZraI	GACGTC	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.