Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002587

Physical Location & Seq

Genomic Coordinates Forward (+)

21927616 .. 21931618

Gene Structure 4003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G265900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGGCAACACATCCTCGATGCTCACTCAGTACGACATCGAAGAAGTCCAGGACCACTGTAACCACACATTTTCGCAGCAGGAGATAGTTTCTCTGTATCAGAGGTTTTGTCAGCTCGATCGCAGTGGCGGAGGTTTCATCTCCGCCGATGAGTTCTTGTCCGTACCTGAATTCGCCGTCAATCCTCTTTCTCAGAGATTGCTGAAGATGTTGTATGGATTGAACTTTAAGGAATTCGTAGCTTTCTTGTCAGCATTCAGTTCTCGTGCAACCTTGCAGCAAAAAATTGAGTTTATTTTTAAGGTATATGATTCAGACTGCAATGGGAAAGTCGCATTCAGTGATATGTTGGATGTTTTACGGGATTTGACGGGGCAGTTCATATCTGAGCAACAGAGGGAGCAAGTGTTGACCCATGTCCTTGAGGAATCAGGCTATACAAAGGATTCTTTGCTAAGCATATCTGACTTTATGAAGACTCTTTGGAACTCTGATTTGAAGATGGATGTTGAGGTTCCTGTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_7

Protein Analysis

176

Amino Acids

20.04

Weight (kDa)

4.55

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18430 AT3G18430 AT3G18430
fragaria_vesca	FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_6g29301 FvH4_6g29301
malus_domestica	MD02G1005100.v1.1 MD17G1216100.v1.1
prunus_persica	Prupe.3G092200_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1
pyrus_communis	pycom02g00390 pycom15g13350 pycom17g22070
rosa_chinensis	RchiOBHm_Chr2g0085251 RchiOBHm_Chr2g0134491
rosa_laevigata	RLG00000015671 RLG00000019396 RLG00000019398
rosa_multiflora	Rmu_sc0005464.1_g000027
rosa_roxburghii	Rroxscaffold_2G00110170 Rroxscaffold_2G00155520
rosa_rugosa	Rorug01G0458600 Rorug01G0458600 Rorug02G0317500 Rorug02G0317600 Rorug02G0317700
rosa_samantha	Rh2AG007300 Rh2AG375600 Rh2BG007900 Rh2CG008700 Rh2CG354100 Rh2DG009000 Rh2DG393200
rosa_wichuraiana	Rw2G000690 Rw2G030150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	129, 144
AcsI	RAATTY	2 cut(s)	170, 233
AcuI	CTGAAG	1 cut(s)	224
AfaI	GTAC	2 cut(s)	32, 165
AgsI	TTSAA	2 cut(s)	223, 499
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	2 cut(s)	115, 242
AluI	AGCT	2 cut(s)	115, 242
ApeKI	GCWGC	2 cut(s)	76, 277
ApoI	RAATTY	2 cut(s)	170, 233
AspS9I	GGNCC	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	52
BauI	CACGAG	1 cut(s)	264
BbsI	GAAGAC	1 cut(s)	482
BbvI	GCAGC	2 cut(s)	88, 289
BccI	CCATC	1 cut(s)	496
BceAI	ACGGC	1 cut(s)	161
BciT130I	CCWGG	1 cut(s)	50
BisI	GCNGC	2 cut(s)	77, 278
BlpI	GCTNAGC	1 cut(s)	455
BlsI	GCNGC	2 cut(s)	78, 279
Bme1390I	CCNGG	1 cut(s)	50
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	1 cut(s)	516
BmrFI	CCNGG	1 cut(s)	50
BmsI	GCATC	1 cut(s)	9
BoxI	GACNNNNGTC	1 cut(s)	416
BpiI	GAAGAC	1 cut(s)	482
Bpu1102I	GCTNAGC	1 cut(s)	455
BpuEI	CTTGAG	1 cut(s)	443
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bse3DI	GCAATG	1 cut(s)	328
BseBI	CCWGG	1 cut(s)	50
BseGI	GGATG	3 cut(s)	11, 358, 511
BseMI	GCAATG	1 cut(s)	328
BseMII	CTCAG	3 cut(s)	41, 206, 378
BseXI	GCAGC	2 cut(s)	88, 289
Bsh1285I	CGRYCG	1 cut(s)	121
BsiEI	CGRYCG	1 cut(s)	121
BsmI	GAATGC	2 cut(s)	254, 335
Bsp143I	GATC	1 cut(s)	118
Bsp1720I	GCTNAGC	1 cut(s)	455
BspACI	CCGC	2 cut(s)	129, 144
BspCNI	CTCAG	3 cut(s)	40, 205, 379
BspLI	GGNNCC	1 cut(s)	516
BsrDI	GCAATG	1 cut(s)	328
BssMI	GATC	1 cut(s)	118
BssSI	CACGAG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	59
BstDEI	CTNAG	4 cut(s)	27, 192, 387, 455
BstF5I	GGATG	3 cut(s)	11, 358, 511
BstKTI	GATC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	118
BstMCI	CGRYCG	1 cut(s)	121
BstNI	CCWGG	1 cut(s)	50
BstPAI	GACNNNNGTC	1 cut(s)	416
BstSCI	CCNGG	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	88, 289
BstV2I	GAAGAC	1 cut(s)	482
BtsCI	GGATG	3 cut(s)	11, 358, 511
BtsI	GCAGTG	1 cut(s)	130
BtsIMutI	CAGTG	3 cut(s)	55, 130, 346
Cfr13I	GGNCC	1 cut(s)	52
Csp6I	GTAC	2 cut(s)	31, 164
CviAII	CATG	1 cut(s)	416
CviJI	RGCY	3 cut(s)	115, 242, 435
CviKI_1	RGCY	3 cut(s)	115, 242, 435
CviQI	GTAC	2 cut(s)	31, 164
DdeI	CTNAG	4 cut(s)	27, 192, 387, 455
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
EciI	GGCGGA	2 cut(s)	133, 144
Eco47I	GGWCC	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	224
EcoRI	GAATTC	2 cut(s)	170, 233
EcoRII	CCWGG	1 cut(s)	48
FaeI	CATG	1 cut(s)	419
FaiI	YATR	9 cut(s)	216, 307, 309, 347, 383, 417, 438, 461, 473
FatI	CATG	1 cut(s)	415
Fnu4HI	GCNGC	2 cut(s)	77, 278
FokI	GGATG	2 cut(s)	365, 518
Fsp4HI	GCNGC	2 cut(s)	77, 278
GluI	GCNGC	2 cut(s)	77, 278
Hin1II	CATG	1 cut(s)	419
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HinfI	GANTC	4 cut(s)	311, 428, 446, 478
Hpy166II	GTNNAC	1 cut(s)	411
Hpy188I	TCNGA	6 cut(s)	102, 195, 316, 388, 466, 493
Hpy8I	GTNNAC	1 cut(s)	411
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4V	TGCA	3 cut(s)	269, 277, 321
HpyF3I	CTNAG	4 cut(s)	27, 192, 387, 455
Hsp92II	CATG	1 cut(s)	419
Kzo9I	GATC	1 cut(s)	118
LmnI	GCTCC	1 cut(s)	400
LpnPI	CCDG	5 cut(s)	35, 62, 65, 180, 417
Lsp1109I	GCAGC	2 cut(s)	88, 289
LweI	GCATC	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	4 cut(s)	53, 217, 487, 511
MluCI	AATT	3 cut(s)	170, 233, 285
MlyI	GAGTC	1 cut(s)	472
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	7 cut(s)	25, 96, 125, 195, 390, 418, 505
MseI	TTAA	2 cut(s)	228, 300
MspR9I	CCNGG	1 cut(s)	50
Mva1269I	GAATGC	2 cut(s)	254, 335
MvaI	CCWGG	1 cut(s)	50
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	1 cut(s)	419
NlaIV	GGNNCC	1 cut(s)	516
PctI	GAATGC	2 cut(s)	254, 335
PfeI	GAWTC	3 cut(s)	311, 428, 446
PfoI	TCCNGGA	1 cut(s)	48
PkrI	GCNGC	2 cut(s)	78, 279
Ple19I	CGATCG	1 cut(s)	121
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
PshAI	GACNNNNGTC	1 cut(s)	416
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	516
PspPI	GGNCC	1 cut(s)	52
PvuI	CGATCG	1 cut(s)	121
RsaI	GTAC	2 cut(s)	32, 165
RsaNI	GTAC	2 cut(s)	31, 164
SaqAI	TTAA	2 cut(s)	228, 300
SatI	GCNGC	2 cut(s)	77, 278
Sau3AI	GATC	1 cut(s)	118
Sau96I	GGNCC	1 cut(s)	52
SchI	GAGTC	1 cut(s)	472
ScrFI	CCNGG	1 cut(s)	50
SetI	ASST	8 cut(s)	107, 117, 136, 169, 244, 275, 306, 516
SfaNI	GCATC	1 cut(s)	9
SinI	GGWCC	1 cut(s)	52
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	3 cut(s)	170, 233, 285
SsiI	CCGC	2 cut(s)	129, 144
StyD4I	CCNGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	59
TaqI	TCGA	3 cut(s)	17, 39, 117
TasI	AATT	3 cut(s)	170, 233, 285
TfiI	GAWTC	3 cut(s)	311, 428, 446
Tru1I	TTAA	2 cut(s)	228, 300
Tru9I	TTAA	2 cut(s)	228, 300
TscAI	CASTG	3 cut(s)	62, 130, 346
TseI	GCWGC	2 cut(s)	76, 277
TspDTI	ATGAA	3 cut(s)	127, 370, 488
TspGWI	ACGGA	1 cut(s)	151
TspRI	CASTG	3 cut(s)	62, 130, 346
VpaK11BI	GGWCC	1 cut(s)	52
XapI	RAATTY	2 cut(s)	170, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.