Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002587

Physical Location & Seq

Genomic Coordinates Forward (+)

51515819 .. 51517889

Gene Structure 2071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019398

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGGAAGTACCTCGTCGATGCTAACTCAGTATGAGATTGAAGAAGTGCAGGAGCACTGCCATAATCTATTTTCCCAGCAAGAAATTGTATCCTTGTATAAAAGATTTTGTCAGCTTGATCGGAATGCAAAGGGTTTCATCTCATCTGATGAATTCTTATCAGTACCCGAGTTAGCAACGAATCCAATATCTCAGAGGCTGCTTAAGATGGTGGAAGGTTTGAACTTTAAGGACCTCGTGGCTTTCTTGTCTGCGTTTAGTGCTAGAGCTACTATGGAGCAGAAAATTGAATTTATTTTCAAGGTATATGATTCAGGCCGCAATGGAAAGGTGTCTTTCAATGATATATTAGAAGTGCTCCGGGATATGTCTGGTTCATTCATGTCTGACGAGCAAAGAGAGAAGGTGTTGACCCAAGTCTTGCATGAATCAGGATATTCAAGGGGATCTTATTTGACATTAGATGACTTCAATTTGGAGAATAAGAAAAATATGCTTGCGGATCCCGAGTTGCACAAAGCACCACAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

178

Amino Acids

20.25

Weight (kDa)

5.14

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18430 AT3G18430 AT3G18430
fragaria_vesca	FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_1g00630 FvH4_6g29301 FvH4_6g29301
malus_domestica	MD02G1005100.v1.1 MD17G1216100.v1.1
prunus_persica	Prupe.3G092200_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1 Prupe.7G265900_v2.0.a1
pyrus_communis	pycom02g00390 pycom15g13350 pycom17g22070
rosa_chinensis	RchiOBHm_Chr2g0085251 RchiOBHm_Chr2g0134491
rosa_laevigata	RLG00000015671 RLG00000019396 RLG00000019398
rosa_multiflora	Rmu_sc0005464.1_g000027
rosa_roxburghii	Rroxscaffold_2G00110170 Rroxscaffold_2G00155520
rosa_rugosa	Rorug01G0458600 Rorug01G0458600 Rorug02G0317500 Rorug02G0317600 Rorug02G0317700
rosa_samantha	Rh2AG007300 Rh2AG375600 Rh2BG007900 Rh2CG008700 Rh2CG354100 Rh2DG009000 Rh2DG393200
rosa_wichuraiana	Rw2G000690 Rw2G030150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	319, 500
AclWI	GGATC	3 cut(s)	454, 497, 510
AcsI	RAATTY	2 cut(s)	152, 290
AfaI	GTAC	2 cut(s)	10, 165
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	7 cut(s)	41, 223, 290, 301, 340, 441, 472
AluBI	AGCT	2 cut(s)	115, 269
AluI	AGCT	2 cut(s)	115, 269
Alw21I	GWGCWC	2 cut(s)	57, 360
AlwI	GGATC	3 cut(s)	454, 497, 510
AlwNI	CAGNNNCTG	1 cut(s)	199
Ama87I	CYCGRG	2 cut(s)	167, 506
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	1 cut(s)	199
ApoI	RAATTY	2 cut(s)	152, 290
AspS9I	GGNCC	1 cut(s)	232
AsuC2I	CCSGG	1 cut(s)	362
AvaI	CYCGRG	2 cut(s)	167, 506
AvaII	GGWCC	1 cut(s)	232
BamHI	GGATCC	1 cut(s)	502
BauI	CACGAG	1 cut(s)	236
Bbv12I	GWGCWC	2 cut(s)	57, 360
BbvI	GCAGC	1 cut(s)	186
BccI	CCATC	1 cut(s)	202
BciVI	GTATCC	1 cut(s)	100
BcnI	CCSGG	1 cut(s)	362
BfaI	CTAG	1 cut(s)	264
BfrI	CTTAAG	1 cut(s)	203
BfuI	GTATCC	1 cut(s)	100
BisI	GCNGC	2 cut(s)	200, 319
BlsI	GCNGC	2 cut(s)	201, 320
Bme1390I	CCNGG	1 cut(s)	362
Bme18I	GGWCC	1 cut(s)	232
BmeT110I	CYCGRG	2 cut(s)	167, 506
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	1 cut(s)	504
BmrFI	CCNGG	1 cut(s)	362
BmsI	GCATC	1 cut(s)	9
BoxI	GACNNNNGTC	1 cut(s)	416
BpuMI	CCSGG	1 cut(s)	362
Bse3DI	GCAATG	1 cut(s)	328
BseMI	GCAATG	1 cut(s)	328
BseMII	CTCAG	2 cut(s)	41, 206
BseXI	GCAGC	1 cut(s)	186
BseYI	CCCAGC	1 cut(s)	75
BsgI	GTGCAG	1 cut(s)	68
BshFI	GGCC	1 cut(s)	318
BsiHKAI	GWGCWC	2 cut(s)	57, 360
BsiHKCI	CYCGRG	2 cut(s)	167, 506
BsiSI	CCGG	1 cut(s)	361
BsmI	GAATGC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	318
BsoBI	CYCGRG	2 cut(s)	167, 506
Bsp1286I	GDGCHC	2 cut(s)	57, 360
Bsp143I	GATC	3 cut(s)	118, 446, 502
BspACI	CCGC	2 cut(s)	319, 500
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	2 cut(s)	40, 205
BspLI	GGNNCC	1 cut(s)	504
BspPI	GGATC	3 cut(s)	454, 497, 510
BspTI	CTTAAG	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	328
BssMI	GATC	3 cut(s)	118, 446, 502
BssSI	CACGAG	1 cut(s)	236
Bst2BI	CACGAG	1 cut(s)	236
BstAFI	CTTAAG	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	498
BstDEI	CTNAG	2 cut(s)	27, 192
BstKTI	GATC	3 cut(s)	121, 449, 505
BstMBI	GATC	3 cut(s)	118, 446, 502
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 527
BstPAI	GACNNNNGTC	1 cut(s)	416
BstSCI	CCNGG	1 cut(s)	360
BstV1I	GCAGC	1 cut(s)	186
BstX2I	RGATCY	2 cut(s)	446, 502
BstYI	RGATCY	2 cut(s)	446, 502
BsuI	GTATCC	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	318
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	498
CaiI	CAGNNNCTG	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	232
Csp6I	GTAC	2 cut(s)	9, 164
CviAII	CATG	2 cut(s)	382, 425
CviJI	RGCY	5 cut(s)	115, 199, 242, 269, 318
CviKI_1	RGCY	5 cut(s)	115, 199, 242, 269, 318
CviQI	GTAC	2 cut(s)	9, 164
DdeI	CTNAG	2 cut(s)	27, 192
DpnI	GATC	3 cut(s)	120, 448, 504
DpnII	GATC	3 cut(s)	118, 446, 502
Eco47I	GGWCC	1 cut(s)	232
Eco88I	CYCGRG	2 cut(s)	167, 506
EcoO109I	RGGNCCY	1 cut(s)	232
EcoRI	GAATTC	1 cut(s)	152
FaeI	CATG	2 cut(s)	385, 428
FalI	AAGNNNNNCTT	2 cut(s)	433, 465
FatI	CATG	2 cut(s)	381, 424
Fnu4HI	GCNGC	2 cut(s)	200, 319
Fsp4HI	GCNGC	2 cut(s)	200, 319
FspBI	CTAG	1 cut(s)	264
GluI	GCNGC	2 cut(s)	200, 319
GsaI	CCCAGC	1 cut(s)	79
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	1 cut(s)	361
Hin1II	CATG	2 cut(s)	385, 428
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HinfI	GANTC	3 cut(s)	181, 311, 428
HpaII	CCGG	1 cut(s)	361
Hpy166II	GTNNAC	1 cut(s)	411
Hpy188I	TCNGA	4 cut(s)	123, 148, 195, 388
Hpy188III	TCNNGA	2 cut(s)	432, 506
Hpy8I	GTNNAC	1 cut(s)	411
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	2 cut(s)	209, 397
HpyCH4V	TGCA	4 cut(s)	49, 128, 424, 514
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 527
HpyF3I	CTNAG	2 cut(s)	27, 192
Hsp92II	CATG	2 cut(s)	385, 428
Kzo9I	GATC	3 cut(s)	118, 446, 502
LmnI	GCTCC	3 cut(s)	52, 277, 363
LpnPI	CCDG	6 cut(s)	35, 89, 300, 357, 374, 417
Lsp1109I	GCAGC	1 cut(s)	186
LweI	GCATC	1 cut(s)	9
MaeI	CTAG	1 cut(s)	264
MalI	GATC	3 cut(s)	120, 448, 504
MboI	GATC	3 cut(s)	118, 446, 502
MboII	GAAGA	1 cut(s)	53
MflI	RGATCY	2 cut(s)	446, 502
MhlI	GDGCHC	2 cut(s)	57, 360
MluCI	AATT	5 cut(s)	84, 152, 285, 290, 472
MnlI	CCTC	3 cut(s)	22, 189, 245
MseI	TTAA	2 cut(s)	204, 228
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	1 cut(s)	361
MspR9I	CCNGG	1 cut(s)	362
Mva1269I	GAATGC	1 cut(s)	130
MwoI	GCNNNNNNNGC	2 cut(s)	260, 527
NciI	CCSGG	1 cut(s)	362
NdeII	GATC	3 cut(s)	118, 446, 502
NlaIII	CATG	2 cut(s)	385, 428
NlaIV	GGNNCC	1 cut(s)	504
PctI	GAATGC	1 cut(s)	130
PfeI	GAWTC	3 cut(s)	181, 311, 428
PfoI	TCCNGGA	1 cut(s)	360
PkrI	GCNGC	2 cut(s)	201, 320
PpuMI	RGGWCCY	1 cut(s)	232
PshAI	GACNNNNGTC	1 cut(s)	416
Psp5II	RGGWCCY	1 cut(s)	232
PspFI	CCCAGC	1 cut(s)	75
PspN4I	GGNNCC	1 cut(s)	504
PspPI	GGNCC	1 cut(s)	232
PspPPI	RGGWCCY	1 cut(s)	232
PstNI	CAGNNNCTG	1 cut(s)	199
PsuI	RGATCY	2 cut(s)	446, 502
RsaI	GTAC	2 cut(s)	10, 165
RsaNI	GTAC	2 cut(s)	9, 164
SaqAI	TTAA	2 cut(s)	204, 228
SatI	GCNGC	2 cut(s)	200, 319
Sau3AI	GATC	3 cut(s)	118, 446, 502
Sau96I	GGNCC	1 cut(s)	232
ScrFI	CCNGG	1 cut(s)	362
SduI	GDGCHC	2 cut(s)	57, 360
SetI	ASST	8 cut(s)	14, 117, 220, 237, 271, 306, 333, 408
SfaNI	GCATC	1 cut(s)	9
SinI	GGWCC	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	5 cut(s)	84, 152, 285, 290, 472
SsiI	CCGC	2 cut(s)	319, 500
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	360
TaqI	TCGA	1 cut(s)	17
TasI	AATT	5 cut(s)	84, 152, 285, 290, 472
TauI	GCSGC	1 cut(s)	321
TfiI	GAWTC	3 cut(s)	181, 311, 428
Tru1I	TTAA	2 cut(s)	204, 228
Tru9I	TTAA	2 cut(s)	204, 228
TscAI	CASTG	1 cut(s)	62
TseI	GCWGC	1 cut(s)	199
TspDTI	ATGAA	5 cut(s)	127, 165, 366, 370, 441
TspRI	CASTG	1 cut(s)	62
Vha464I	CTTAAG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	2 cut(s)	152, 290
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.