Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001822

Physical Location & Seq

Genomic Coordinates Forward (+)

6903757 .. 6906207

Gene Structure 2451 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G19860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGACGTTTCTGCTAGAAAGTCACAAAAAGCTGGGCGCGAAAAGTTGAGGAGGGAAAAACTGAATGAGCATTTTGTTGAACTGGGAAATGTACTCGATCCAGAGAGACCCAAGAATGACAAAGCCACGATTCTGACTGATACTGTTCAGTTGTTGAAAGAGCTCACATCTGAAGTCAACAAACTGAAATCTGAGTACACCGCATTGACAGATGAGTCCCGCGAGTTGACACAGGAGAAAAACGACCTGAGAGAAGAAAAGACATCGCTGAAATCAGATATAGAGAATCTCAATCTTCAATACCAGCAGAGATTAAGGTCAATGTCTCCATGGGGAGCTGCGATGGATCACACAGTCATGATGGCTCCACCACCCTCCTTTCCATACCCTATGCCTATTGCTATGCCTCCCGGGTCAATCCCAATGCATCCATCAATGCCATCTTACACATACTTTGGGAACCAGAACCCTAGCATGATCCCAGCTCCATGTCCTACATACATGCCCTACATGCCTCCTAATACAGTCGTTGAGCAACAATCCGTGCACATTCCACAGAACCCCGGTAACCGTTCTCGGGAACCTAGAGCAAAGGTTTCAAGAGAGAGCAGATCTGAGAAAGCAGAGGACTCCAACGAAGTTGCAACACAACTCGAATTAAAAACCCCTGGATCTACTTCTGATAAGGATACATTGCAAAGGCCAGAGAAGACAAAGAGATGTAAGAGAAACAACAACAACAACTCAATAGAAGAAAGCTCTCATTCTAGCAAGTGTTCATCTTCTCCGAGCGTACGAGACCACAGTTCTTCCAGTAGCGTAGCTGGTGGCCAAAAACCTGATGATGCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

284

Amino Acids

31.87

Weight (kDa)

8.3

Isoelectric Point (pI)

71.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_IRO3	PF23177	5 - 79	2.8e-17	Iron-related transcription factor 3 bHLH domain
HLH	PF00010	6 - 56	2e-08	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19860 AT3G19860 AT3G19860
fragaria_vesca	FvH4_1g11770 FvH4_2g02000 FvH4_2g02000 FvH4_2g02000
malus_domestica	MD02G1132000.v1.1 MD05G1115800.v1.1 MD15G1245200.v1.1
prunus_persica	Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.8G160700_v2.0.a1
pyrus_communis	pycom02g10290 pycom05g11010 pycom15g21570
rosa_chinensis	RchiOBHm_Chr2g0099391 RchiOBHm_Chr6g0245181
rosa_laevigata	RLG00000015318 RLG00000016878
rosa_multiflora	Rmu_co8372605.1_g000001 Rmu_sc0001288.1_g000004 Rmu_sc0002487.1_g000008 Rmu_sc0027529.1_g000004
rosa_roxburghii	Rroxscaffold_2G00143110 Rroxscaffold_3G00242190 Rroxscaffold_7G00215380
rosa_rugosa	Rorug02G0079200 Rorug02G0079300 Rorug02G0079400 Rorug05G0512600 Rorug05G0512700 Rorug05G0512800.1
rosa_samantha	Rh2AG129100 Rh2BG132100 Rh2CG132900 Rh2DG133100 Rh6AG027700 Rh6BG023800 Rh6CG022200 Rh6DG022300
rosa_wichuraiana	Rw2G009940 Rw6G002340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	214
AccII	CGCG	2 cut(s)	39, 222
AciI	CCGC	2 cut(s)	201, 220
AclWI	GGATC	4 cut(s)	92, 354, 472, 679
AcoI	YGGCCR	1 cut(s)	829
AcuI	CTGAAG	1 cut(s)	192
AfaI	GTAC	3 cut(s)	93, 197, 795
AfiI	CCNNNNNNNGG	1 cut(s)	577
AgsI	TTSAA	4 cut(s)	80, 157, 299, 600
AjnI	CCWGG	1 cut(s)	667
AluBI	AGCT	6 cut(s)	32, 163, 338, 485, 759, 824
AluI	AGCT	6 cut(s)	32, 163, 338, 485, 759, 824
Alw21I	GWGCWC	2 cut(s)	165, 549
Alw26I	GTCTC	3 cut(s)	100, 330, 792
Alw44I	GTGCAC	1 cut(s)	545
AlwI	GGATC	4 cut(s)	92, 354, 472, 679
Ama87I	CYCGRG	2 cut(s)	410, 576
AoxI	GGCC	2 cut(s)	701, 829
ApaLI	GTGCAC	1 cut(s)	545
ApeKI	GCWGC	1 cut(s)	338
AspLEI	GCGC	1 cut(s)	39
AsuC2I	CCSGG	3 cut(s)	411, 412, 564
AvaI	CYCGRG	2 cut(s)	410, 576
BaeGI	GKGCMC	1 cut(s)	549
BalI	TGGCCA	1 cut(s)	831
BanII	GRGCYC	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	716
Bbv12I	GWGCWC	2 cut(s)	165, 549
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	4 cut(s)	337, 355, 439, 448
BciT130I	CCWGG	1 cut(s)	669
BciVI	GTATCC	1 cut(s)	682
BcnI	CCSGG	3 cut(s)	411, 412, 564
BcoDI	GTCTC	3 cut(s)	100, 330, 792
BfaI	CTAG	4 cut(s)	15, 471, 585, 768
BfuI	GTATCC	1 cut(s)	682
BglII	AGATCT	1 cut(s)	611
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
Bme1390I	CCNGG	4 cut(s)	411, 412, 564, 669
BmeT110I	CYCGRG	2 cut(s)	410, 576
BmiI	GGNNCC	3 cut(s)	366, 461, 582
BmrFI	CCNGG	4 cut(s)	411, 412, 564, 669
BmrI	ACTGGG	1 cut(s)	92
BmsI	GCATC	2 cut(s)	436, 835
BmuI	ACTGGG	1 cut(s)	92
BpiI	GAAGAC	1 cut(s)	716
BpuMI	CCSGG	3 cut(s)	411, 412, 564
BsaI	GGTCTC	2 cut(s)	100, 792
BsaJI	CCNNGG	4 cut(s)	329, 410, 562, 667
Bsc4I	CCNNNNNNNGG	1 cut(s)	577
Bse1I	ACTGG	2 cut(s)	87, 813
Bse3DI	GCAATG	1 cut(s)	692
BseBI	CCWGG	1 cut(s)	669
BseDI	CCNNGG	4 cut(s)	329, 410, 562, 667
BseGI	GGATG	1 cut(s)	427
BseLI	CCNNNNNNNGG	1 cut(s)	577
BseMI	GCAATG	1 cut(s)	692
BseMII	CTCAG	3 cut(s)	183, 239, 606
BseNI	ACTGG	2 cut(s)	87, 813
BseRI	GAGGAG	1 cut(s)	64
BseSI	GKGCMC	1 cut(s)	549
BseXI	GCAGC	1 cut(s)	325
BseYI	CCCAGC	2 cut(s)	32, 481
Bsh1236I	CGCG	2 cut(s)	39, 222
BshFI	GGCC	2 cut(s)	703, 831
BsiHKAI	GWGCWC	2 cut(s)	165, 549
BsiHKCI	CYCGRG	2 cut(s)	410, 576
BsiSI	CCGG	2 cut(s)	411, 564
BsiWI	CGTACG	1 cut(s)	793
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	577
BsmAI	GTCTC	3 cut(s)	100, 330, 792
BsmFI	GGGAC	1 cut(s)	202
BsnI	GGCC	2 cut(s)	703, 831
Bso31I	GGTCTC	2 cut(s)	100, 792
BsoBI	CYCGRG	2 cut(s)	410, 576
Bsp1286I	GDGCHC	2 cut(s)	165, 549
Bsp143I	GATC	5 cut(s)	97, 346, 477, 611, 671
Bsp19I	CCATGG	1 cut(s)	329
BspACI	CCGC	2 cut(s)	201, 220
BspANI	GGCC	2 cut(s)	703, 831
BspCNI	CTCAG	3 cut(s)	184, 240, 607
BspFNI	CGCG	2 cut(s)	39, 222
BspHI	TCATGA	1 cut(s)	357
BspLI	GGNNCC	3 cut(s)	366, 461, 582
BspPI	GGATC	4 cut(s)	92, 354, 472, 679
BspTNI	GGTCTC	2 cut(s)	100, 792
BsrDI	GCAATG	1 cut(s)	692
BsrI	ACTGG	2 cut(s)	87, 813
BssECI	CCNNGG	4 cut(s)	329, 410, 562, 667
BssMI	GATC	5 cut(s)	97, 346, 477, 611, 671
BssT1I	CCWWGG	1 cut(s)	329
Bst2UI	CCWGG	1 cut(s)	669
Bst4CI	ACNGT	5 cut(s)	145, 355, 526, 572, 806
BstDEI	CTNAG	3 cut(s)	192, 248, 615
BstDSI	CCRYGG	1 cut(s)	329
BstEII	GGTNACC	1 cut(s)	566
BstF5I	GGATG	1 cut(s)	427
BstFNI	CGCG	2 cut(s)	39, 222
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	5 cut(s)	100, 349, 480, 614, 674
BstMAI	GTCTC	3 cut(s)	100, 330, 792
BstMBI	GATC	5 cut(s)	97, 346, 477, 611, 671
BstMWI	GCNNNNNNNGC	1 cut(s)	511
BstNI	CCWGG	1 cut(s)	669
BstNSI	RCATGY	2 cut(s)	505, 514
BstPI	GGTNACC	1 cut(s)	566
BstSCI	CCNGG	4 cut(s)	409, 410, 562, 667
BstSLI	GKGCMC	1 cut(s)	549
BstUI	CGCG	2 cut(s)	39, 222
BstV1I	GCAGC	1 cut(s)	325
BstV2I	GAAGAC	1 cut(s)	716
BstX2I	RGATCY	2 cut(s)	611, 671
BstYI	RGATCY	2 cut(s)	611, 671
BsuI	GTATCC	1 cut(s)	682
BsuRI	GGCC	2 cut(s)	703, 831
BtgI	CCRYGG	1 cut(s)	329
BtgZI	GCGATG	2 cut(s)	249, 356
BtsCI	GGATG	1 cut(s)	427
CciI	TCATGA	1 cut(s)	357
CfoI	GCGC	1 cut(s)	39
Cfr9I	CCCGGG	1 cut(s)	410
Csp6I	GTAC	3 cut(s)	92, 196, 794
CviAII	CATG	6 cut(s)	330, 358, 475, 489, 502, 511
CviQI	GTAC	3 cut(s)	92, 196, 794
DdeI	CTNAG	3 cut(s)	192, 248, 615
DpnI	GATC	5 cut(s)	99, 348, 479, 613, 673
DpnII	GATC	5 cut(s)	97, 346, 477, 611, 671
DrdI	GACNNNNNNGTC	1 cut(s)	214
DseDI	GACNNNNNNGTC	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	829
Ecl136II	GAGCTC	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	329
Eco24I	GRGCYC	1 cut(s)	165
Eco31I	GGTCTC	2 cut(s)	100, 792
Eco53kI	GAGCTC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	192
Eco88I	CYCGRG	2 cut(s)	410, 576
Eco91I	GGTNACC	1 cut(s)	566
EcoICRI	GAGCTC	1 cut(s)	163
EcoO65I	GGTNACC	1 cut(s)	566
EcoRII	CCWGG	1 cut(s)	667
EcoT14I	CCWWGG	1 cut(s)	329
EcoT22I	ATGCAT	1 cut(s)	429
EcoT38I	GRGCYC	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	329
FaeI	CATG	6 cut(s)	333, 361, 478, 492, 505, 514
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	6 cut(s)	329, 357, 474, 488, 501, 510
FauI	CCCGC	1 cut(s)	227
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	1 cut(s)	414
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	1 cut(s)	339
FspBI	CTAG	4 cut(s)	15, 471, 585, 768
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	1 cut(s)	339
GsaI	CCCAGC	2 cut(s)	36, 485
HaeIII	GGCC	2 cut(s)	703, 831
HapII	CCGG	2 cut(s)	411, 564
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	6 cut(s)	333, 361, 478, 492, 505, 514
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HincII	GTYRAC	2 cut(s)	178, 228
HindII	GTYRAC	2 cut(s)	178, 228
HinfI	GANTC	4 cut(s)	130, 215, 286, 629
HpaII	CCGG	2 cut(s)	411, 564
Hpy166II	GTNNAC	4 cut(s)	178, 198, 228, 547
Hpy188I	TCNGA	7 cut(s)	135, 172, 193, 277, 616, 682, 789
Hpy188III	TCNNGA	4 cut(s)	101, 358, 578, 600
Hpy8I	GTNNAC	4 cut(s)	178, 198, 228, 547
HpyCH4III	ACNGT	5 cut(s)	145, 355, 526, 572, 806
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	5 cut(s)	427, 547, 644, 697, 848
HpyF10VI	GCNNNNNNNGC	1 cut(s)	511
HpyF3I	CTNAG	3 cut(s)	192, 248, 615
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	6 cut(s)	333, 361, 478, 492, 505, 514
HspAI	GCGC	1 cut(s)	37
Kzo9I	GATC	5 cut(s)	97, 346, 477, 611, 671
LmnI	GCTCC	3 cut(s)	335, 370, 490
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	2 cut(s)	436, 835
MaeI	CTAG	4 cut(s)	15, 471, 585, 768
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	2 cut(s)	21, 566
MalI	GATC	5 cut(s)	99, 348, 479, 613, 673
MboI	GATC	5 cut(s)	97, 346, 477, 611, 671
MboII	GAAGA	6 cut(s)	266, 287, 721, 764, 774, 801
MflI	RGATCY	2 cut(s)	611, 671
MhlI	GDGCHC	2 cut(s)	165, 549
MlsI	TGGCCA	1 cut(s)	831
MluCI	AATT	1 cut(s)	656
MluNI	TGGCCA	1 cut(s)	831
MlyI	GAGTC	2 cut(s)	224, 623
MmeI	TCCRAC	1 cut(s)	657
MnlI	CCTC	6 cut(s)	42, 45, 385, 417, 525, 619
Mox20I	TGGCCA	1 cut(s)	831
Mph1103I	ATGCAT	1 cut(s)	429
MscI	TGGCCA	1 cut(s)	831
MseI	TTAA	2 cut(s)	314, 659
MslI	CAYNNNNRTG	1 cut(s)	356
Msp20I	TGGCCA	1 cut(s)	831
MspI	CCGG	2 cut(s)	411, 564
MspR9I	CCNGG	4 cut(s)	411, 412, 564, 669
MvaI	CCWGG	1 cut(s)	669
MvnI	CGCG	2 cut(s)	39, 222
MwoI	GCNNNNNNNGC	1 cut(s)	511
NciI	CCSGG	3 cut(s)	411, 412, 564
NcoI	CCATGG	1 cut(s)	329
NdeII	GATC	5 cut(s)	97, 346, 477, 611, 671
NlaIII	CATG	6 cut(s)	333, 361, 478, 492, 505, 514
NlaIV	GGNNCC	3 cut(s)	366, 461, 582
NmuCI	GTSAC	1 cut(s)	21
NsiI	ATGCAT	1 cut(s)	429
NspI	RCATGY	2 cut(s)	505, 514
PagI	TCATGA	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	130, 286
Pfl23II	CGTACG	1 cut(s)	793
PkrI	GCNGC	1 cut(s)	340
PleI	GAGTC	2 cut(s)	223, 623
PpsI	GAGTC	2 cut(s)	223, 623
Psp124BI	GAGCTC	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	667
PspEI	GGTNACC	1 cut(s)	566
PspFI	CCCAGC	2 cut(s)	32, 481
PspGI	CCWGG	1 cut(s)	667
PspLI	CGTACG	1 cut(s)	793
PspN4I	GGNNCC	3 cut(s)	366, 461, 582
PsuI	RGATCY	2 cut(s)	611, 671
RsaI	GTAC	3 cut(s)	93, 197, 795
RsaNI	GTAC	3 cut(s)	92, 196, 794
RseI	CAYNNNNRTG	1 cut(s)	356
SacI	GAGCTC	1 cut(s)	165
SaqAI	TTAA	2 cut(s)	314, 659
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	5 cut(s)	97, 346, 477, 611, 671
SchI	GAGTC	2 cut(s)	224, 623
ScrFI	CCNGG	4 cut(s)	411, 412, 564, 669
SduI	GDGCHC	2 cut(s)	165, 549
SfaNI	GCATC	2 cut(s)	436, 835
SmaI	CCCGGG	1 cut(s)	412
SmiMI	CAYNNNNRTG	1 cut(s)	356
Sse9I	AATT	1 cut(s)	656
SsiI	CCGC	2 cut(s)	201, 220
SspMI	CTAG	4 cut(s)	15, 471, 585, 768
SstI	GAGCTC	1 cut(s)	165
StyD4I	CCNGG	4 cut(s)	409, 410, 562, 667
StyI	CCWWGG	1 cut(s)	329
TaaI	ACNGT	5 cut(s)	145, 355, 526, 572, 806
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	2 cut(s)	96, 654
TasI	AATT	1 cut(s)	656
TatI	WGTACW	2 cut(s)	91, 195
TfiI	GAWTC	2 cut(s)	130, 286
Tru1I	TTAA	2 cut(s)	314, 659
Tru9I	TTAA	2 cut(s)	314, 659
TseFI	GTSAC	1 cut(s)	21
TseI	GCWGC	1 cut(s)	338
Tsp45I	GTSAC	1 cut(s)	21
TspDTI	ATGAA	1 cut(s)	768
TspGWI	ACGGA	1 cut(s)	532
TspMI	CCCGGG	1 cut(s)	410
VneI	GTGCAC	1 cut(s)	545
XceI	RCATGY	2 cut(s)	505, 514
XmaI	CCCGGG	1 cut(s)	410
XspI	CTAG	4 cut(s)	15, 471, 585, 768
Zsp2I	ATGCAT	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.