Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001822

Physical Location & Seq

Genomic Coordinates Reverse (-)

23674447 .. 23677946

Gene Structure 3500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1115800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGATCAGCTCAAACACGAAAACTTCAACCAATCCGCGCAGCCTCCGTTCTCATTTGCCGACGAATTTCCGCAGCCCGCTTCCGATCGCCGCCTGCCCCCCACTCGCTCCCAACCCAATTCAAGCCAAAGGCCTGAGGGGGAAGTTAAGGATTGTCTAACTGCTAGAAAGATTCAGAAGGCTGACCGGGAGAAGTTGAGGAGGGATCGACTAAATGAGCAGTTTCTTGAGTTGGGAAATGTCCTAGATCCGGACAGACCCAAAAATGACAAAGCAACCATTATAGCGGACACAATTCAAGCGCTGAAGGATTTGACATTAGAAGTAGACAAACTTAAATCTGAGTGTGTTTCTCTAACCGAAGAGTCTCGTGAGTTGACACATGAGAAAAATGACCTTAGAGAAGAGAAGGCATCTCTTAAATCTGACATCGAGGACCTTAATGCTCAGTATCAGCAGAGACTCAGGACTATGTTCCCTTGGGGTGCTATGGATCACTCAGTTGTAATGGCCCCACCTTCATATCCATATCCAATGCCGATGACAATGCCAATGCCAATGCCCATGCAAATGCCTCCACGACCAATGCCCATGCATCCACATATGCAGCCATACCATTATTTCGGAAACCAGAATCCTGGGGTCATTCCGAACCCCTGCTCAACTTATCTTCCATATATTACTCCTAATACTCTGGTTGAGCAGCAGTCCACCCAATATGTATCTCCAGTAGTGCATCCAGGAAGCCAGTCTCAAGTTTCAGGCAAACAAGATGCTATAAACAAATCACCCGGGGAGAGCCAGGTTCACAAAAGTGAGGATTCAATCGATGTCACGACAGAACTAGAGTTGAAGACTCCTGGATCTACTTCGGATCAGGATTTGTCATCAGTACGAAGAAAATCTAAAAAGTCAGCGAGGCTGGAAAACAGAGAAGGCAGTTCGTCAAGTAGATGTTCTTCTTCTCGTAGTGTACAGGATAGCTCATCTAATAGTGTAGTTGGTGGCAAAAAGGCTGACGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

342

Amino Acids

38.36

Weight (kDa)

6.11

Isoelectric Point (pI)

63.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_IRO3	PF23177	55 - 129	2.9e-16	Iron-related transcription factor 3 bHLH domain
HLH	PF00010	56 - 105	2e-07	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19860 AT3G19860 AT3G19860
fragaria_vesca	FvH4_1g11770 FvH4_2g02000 FvH4_2g02000 FvH4_2g02000
malus_domestica	MD02G1132000.v1.1 MD05G1115800.v1.1 MD15G1245200.v1.1
prunus_persica	Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.8G160700_v2.0.a1
pyrus_communis	pycom02g10290 pycom05g11010 pycom15g21570
rosa_chinensis	RchiOBHm_Chr2g0099391 RchiOBHm_Chr6g0245181
rosa_laevigata	RLG00000015318 RLG00000016878
rosa_multiflora	Rmu_co8372605.1_g000001 Rmu_sc0001288.1_g000004 Rmu_sc0002487.1_g000008 Rmu_sc0027529.1_g000004
rosa_roxburghii	Rroxscaffold_2G00143110 Rroxscaffold_3G00242190 Rroxscaffold_7G00215380
rosa_rugosa	Rorug02G0079200 Rorug02G0079300 Rorug02G0079400 Rorug05G0512600 Rorug05G0512700 Rorug05G0512800.1
rosa_samantha	Rh2AG129100 Rh2BG132100 Rh2CG132900 Rh2DG133100 Rh6AG027700 Rh6BG023800 Rh6CG022200 Rh6DG022300
rosa_wichuraiana	Rw2G009940 Rw6G002340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	327
AccII	CGCG	1 cut(s)	38
AccIII	TCCGGA	1 cut(s)	250
AciI	CCGC	5 cut(s)	36, 71, 78, 91, 287
AclWI	GGATC	6 cut(s)	12, 213, 242, 501, 871, 882
AcsI	RAATTY	1 cut(s)	65
AcuI	CTGAAG	1 cut(s)	326
AfaI	GTAC	2 cut(s)	894, 975
AfeI	AGCGCT	1 cut(s)	303
AfiI	CCNNNNNNNGG	1 cut(s)	250
AgsI	TTSAA	5 cut(s)	28, 123, 299, 825, 853
AjnI	CCWGG	4 cut(s)	637, 739, 801, 859
AleI	CACNNNNGTG	1 cut(s)	813
AluBI	AGCT	2 cut(s)	10, 984
AluI	AGCT	2 cut(s)	10, 984
Alw26I	GTCTC	3 cut(s)	372, 454, 756
AlwI	GGATC	6 cut(s)	12, 213, 242, 501, 871, 882
Ama87I	CYCGRG	1 cut(s)	791
Aor13HI	TCCGGA	1 cut(s)	250
Aor51HI	AGCGCT	1 cut(s)	303
AoxI	GGCC	2 cut(s)	131, 510
ApeKI	GCWGC	4 cut(s)	40, 73, 607, 703
ApoI	RAATTY	1 cut(s)	65
AspLEI	GCGC	2 cut(s)	40, 304
AspS9I	GGNCC	2 cut(s)	436, 511
AsuC2I	CCSGG	3 cut(s)	188, 792, 793
AsuHPI	GGTGA	1 cut(s)	780
AvaI	CYCGRG	1 cut(s)	791
AvaII	GGWCC	1 cut(s)	436
AxyI	CCTNAGG	1 cut(s)	135
BarI	GAAGNNNNNNTAC	2 cut(s)	943, 975
BauI	CACGAG	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	860
BbvI	GCAGC	4 cut(s)	52, 85, 619, 715
BcgI	CGANNNNNNTGC	2 cut(s)	529, 563
BciT130I	CCWGG	4 cut(s)	639, 741, 803, 861
BcnI	CCSGG	3 cut(s)	188, 792, 793
BcoDI	GTCTC	3 cut(s)	372, 454, 756
BfaI	CTAG	3 cut(s)	165, 245, 845
BfoI	RGCGCY	1 cut(s)	305
BisI	GCNGC	5 cut(s)	41, 74, 91, 608, 704
BlsI	GCNGC	5 cut(s)	42, 75, 92, 609, 705
Bme1390I	CCNGG	7 cut(s)	188, 639, 741, 792, 793, 803, 861
Bme18I	GGWCC	1 cut(s)	436
BmeT110I	CYCGRG	1 cut(s)	791
BmgT120I	GGNCC	2 cut(s)	436, 511
BmiI	GGNNCC	1 cut(s)	513
BmrFI	CCNGG	7 cut(s)	188, 639, 741, 792, 793, 803, 861
BmsI	GCATC	4 cut(s)	422, 604, 745, 763
BpiI	GAAGAC	1 cut(s)	860
BpmI	CTGGAG	1 cut(s)	711
BpuEI	CTTGAG	2 cut(s)	248, 738
BpuMI	CCSGG	3 cut(s)	188, 792, 793
Bsa29I	ATCGAT	1 cut(s)	828
BsaJI	CCNNGG	4 cut(s)	479, 638, 791, 792
BsaWI	WCCGGW	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse1I	ACTGG	2 cut(s)	728, 748
Bse21I	CCTNAGG	1 cut(s)	135
BseAI	TCCGGA	1 cut(s)	250
BseBI	CCWGG	4 cut(s)	639, 741, 803, 861
BseCI	ATCGAT	1 cut(s)	828
BseDI	CCNNGG	4 cut(s)	479, 638, 791, 792
BseGI	GGATG	2 cut(s)	595, 736
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMII	CTCAG	5 cut(s)	126, 333, 461, 478, 513
BseNI	ACTGG	2 cut(s)	728, 748
BseRI	GAGGAG	1 cut(s)	214
BseXI	GCAGC	4 cut(s)	52, 85, 619, 715
Bsh1236I	CGCG	1 cut(s)	38
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	2 cut(s)	133, 512
BshVI	ATCGAT	1 cut(s)	828
BsiEI	CGRYCG	1 cut(s)	88
BsiHKCI	CYCGRG	1 cut(s)	791
BsiSI	CCGG	3 cut(s)	187, 251, 792
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmAI	GTCTC	3 cut(s)	372, 454, 756
BsnI	GGCC	2 cut(s)	133, 512
BsoBI	CYCGRG	1 cut(s)	791
Bsp13I	TCCGGA	1 cut(s)	250
Bsp1407I	TGTACA	1 cut(s)	973
Bsp143I	GATC	7 cut(s)	4, 85, 205, 247, 493, 863, 874
BspACI	CCGC	5 cut(s)	36, 71, 78, 91, 287
BspANI	GGCC	2 cut(s)	133, 512
BspCNI	CTCAG	5 cut(s)	127, 334, 460, 477, 512
BspDI	ATCGAT	1 cut(s)	828
BspEI	TCCGGA	1 cut(s)	250
BspFNI	CGCG	1 cut(s)	38
BspLI	GGNNCC	1 cut(s)	513
BspPI	GGATC	6 cut(s)	12, 213, 242, 501, 871, 882
BsrGI	TGTACA	1 cut(s)	973
BsrI	ACTGG	2 cut(s)	728, 748
BssECI	CCNNGG	4 cut(s)	479, 638, 791, 792
BssMI	GATC	7 cut(s)	4, 85, 205, 247, 493, 863, 874
BssSI	CACGAG	1 cut(s)	369
BssT1I	CCWWGG	1 cut(s)	479
Bst2BI	CACGAG	1 cut(s)	369
Bst2UI	CCWGG	4 cut(s)	639, 741, 803, 861
Bst6I	CTCTTC	2 cut(s)	357, 399
BstAUI	TGTACA	1 cut(s)	973
BstC8I	GCNNGC	2 cut(s)	78, 95
BstDEI	CTNAG	6 cut(s)	135, 342, 398, 447, 464, 499
BstF5I	GGATG	2 cut(s)	595, 736
BstFNI	CGCG	1 cut(s)	38
BstH2I	RGCGCY	1 cut(s)	305
BstHHI	GCGC	2 cut(s)	40, 304
BstKTI	GATC	7 cut(s)	7, 88, 208, 250, 496, 866, 877
BstMAI	GTCTC	3 cut(s)	372, 454, 756
BstMBI	GATC	7 cut(s)	4, 85, 205, 247, 493, 863, 874
BstMCI	CGRYCG	1 cut(s)	88
BstNI	CCWGG	4 cut(s)	639, 741, 803, 861
BstSCI	CCNGG	7 cut(s)	186, 637, 739, 790, 791, 801, 859
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	4 cut(s)	52, 85, 619, 715
BstV2I	GAAGAC	1 cut(s)	860
BstX2I	RGATCY	2 cut(s)	247, 863
BstXI	CCANNNNNNTGG	1 cut(s)	638
BstYI	RGATCY	2 cut(s)	247, 863
Bsu15I	ATCGAT	1 cut(s)	828
Bsu36I	CCTNAGG	1 cut(s)	135
BsuRI	GGCC	2 cut(s)	133, 512
BsuTUI	ATCGAT	1 cut(s)	828
BtsCI	GGATG	2 cut(s)	595, 736
Cac8I	GCNNGC	2 cut(s)	78, 95
CfoI	GCGC	2 cut(s)	40, 304
Cfr13I	GGNCC	2 cut(s)	436, 511
Cfr9I	CCCGGG	1 cut(s)	791
ClaI	ATCGAT	1 cut(s)	828
Csp6I	GTAC	2 cut(s)	893, 974
CviAII	CATG	3 cut(s)	383, 565, 592
CviQI	GTAC	2 cut(s)	893, 974
DdeI	CTNAG	6 cut(s)	135, 342, 398, 447, 464, 499
DpnI	GATC	7 cut(s)	6, 87, 207, 249, 495, 865, 876
DpnII	GATC	7 cut(s)	4, 85, 205, 247, 493, 863, 874
Eam1104I	CTCTTC	2 cut(s)	357, 399
EarI	CTCTTC	2 cut(s)	357, 399
Eco130I	CCWWGG	1 cut(s)	479
Eco147I	AGGCCT	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	436
Eco47III	AGCGCT	1 cut(s)	303
Eco57I	CTGAAG	1 cut(s)	326
Eco81I	CCTNAGG	1 cut(s)	135
Eco88I	CYCGRG	1 cut(s)	791
EcoO109I	RGGNCCY	1 cut(s)	436
EcoRII	CCWGG	4 cut(s)	637, 739, 801, 859
EcoT14I	CCWWGG	1 cut(s)	479
EcoT22I	ATGCAT	1 cut(s)	597
ErhI	CCWWGG	1 cut(s)	479
FaeI	CATG	3 cut(s)	386, 568, 595
FatI	CATG	3 cut(s)	382, 564, 591
FauI	CCCGC	1 cut(s)	85
FauNDI	CATATG	1 cut(s)	603
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	5 cut(s)	41, 74, 91, 608, 704
FokI	GGATG	2 cut(s)	582, 723
Fsp4HI	GCNGC	5 cut(s)	41, 74, 91, 608, 704
FspBI	CTAG	3 cut(s)	165, 245, 845
GlaI	GCGC	2 cut(s)	39, 303
GluI	GCNGC	5 cut(s)	41, 74, 91, 608, 704
GsuI	CTGGAG	1 cut(s)	711
HaeII	RGCGCY	1 cut(s)	305
HaeIII	GGCC	2 cut(s)	133, 512
HapII	CCGG	3 cut(s)	187, 251, 792
HhaI	GCGC	2 cut(s)	40, 304
Hin1II	CATG	3 cut(s)	386, 568, 595
Hin6I	GCGC	2 cut(s)	38, 302
HinP1I	GCGC	2 cut(s)	38, 302
HincII	GTYRAC	1 cut(s)	378
HindII	GTYRAC	1 cut(s)	378
HinfI	GANTC	6 cut(s)	172, 365, 462, 634, 821, 856
HpaII	CCGG	3 cut(s)	187, 251, 792
HphI	GGTGA	1 cut(s)	780
Hpy166II	GTNNAC	5 cut(s)	328, 378, 711, 808, 974
Hpy188I	TCNGA	7 cut(s)	85, 177, 343, 427, 626, 651, 874
Hpy188III	TCNNGA	6 cut(s)	227, 251, 371, 466, 835, 878
Hpy8I	GTNNAC	5 cut(s)	328, 378, 711, 808, 974
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	5 cut(s)	172, 301, 403, 528, 929
HpyCH4V	TGCA	4 cut(s)	568, 595, 607, 736
HpyF3I	CTNAG	6 cut(s)	135, 342, 398, 447, 464, 499
Hsp92II	CATG	3 cut(s)	386, 568, 595
HspAI	GCGC	2 cut(s)	38, 302
Kpn2I	TCCGGA	1 cut(s)	250
Kzo9I	GATC	7 cut(s)	4, 85, 205, 247, 493, 863, 874
LmnI	GCTCC	1 cut(s)	113
Lsp1109I	GCAGC	4 cut(s)	52, 85, 619, 715
LweI	GCATC	4 cut(s)	422, 604, 745, 763
MaeI	CTAG	3 cut(s)	165, 245, 845
MaeIII	GTNAC	1 cut(s)	832
MalI	GATC	7 cut(s)	6, 87, 207, 249, 495, 865, 876
MboI	GATC	7 cut(s)	4, 85, 205, 247, 493, 863, 874
MboII	GAAGA	7 cut(s)	374, 416, 662, 865, 909, 951, 954
MflI	RGATCY	2 cut(s)	247, 863
MluCI	AATT	3 cut(s)	65, 118, 294
MlyI	GAGTC	3 cut(s)	374, 456, 850
MnlI	CCTC	8 cut(s)	54, 130, 192, 195, 427, 585, 811, 912
Mph1103I	ATGCAT	1 cut(s)	597
MroI	TCCGGA	1 cut(s)	250
MseI	TTAA	4 cut(s)	147, 336, 420, 441
MslI	CAYNNNNRTG	2 cut(s)	569, 813
MspI	CCGG	3 cut(s)	187, 251, 792
MspR9I	CCNGG	7 cut(s)	188, 639, 741, 792, 793, 803, 861
MvaI	CCWGG	4 cut(s)	639, 741, 803, 861
MvnI	CGCG	1 cut(s)	38
NciI	CCSGG	3 cut(s)	188, 792, 793
NdeI	CATATG	1 cut(s)	603
NdeII	GATC	7 cut(s)	4, 85, 205, 247, 493, 863, 874
NlaIII	CATG	3 cut(s)	386, 568, 595
NlaIV	GGNNCC	1 cut(s)	513
NmuCI	GTSAC	1 cut(s)	832
NsiI	ATGCAT	1 cut(s)	597
OliI	CACNNNNGTG	1 cut(s)	813
PceI	AGGCCT	1 cut(s)	133
PfeI	GAWTC	3 cut(s)	172, 634, 821
PfoI	TCCNGGA	2 cut(s)	739, 859
PkrI	GCNGC	5 cut(s)	42, 75, 92, 609, 705
Ple19I	CGATCG	1 cut(s)	88
PleI	GAGTC	3 cut(s)	373, 456, 850
PpsI	GAGTC	3 cut(s)	373, 456, 850
PpuMI	RGGWCCY	1 cut(s)	436
Psp5II	RGGWCCY	1 cut(s)	436
Psp6I	CCWGG	4 cut(s)	637, 739, 801, 859
PspGI	CCWGG	4 cut(s)	637, 739, 801, 859
PspN4I	GGNNCC	1 cut(s)	513
PspPI	GGNCC	2 cut(s)	436, 511
PspPPI	RGGWCCY	1 cut(s)	436
PsuI	RGATCY	2 cut(s)	247, 863
PvuI	CGATCG	1 cut(s)	88
RsaI	GTAC	2 cut(s)	894, 975
RsaNI	GTAC	2 cut(s)	893, 974
RseI	CAYNNNNRTG	2 cut(s)	569, 813
SaqAI	TTAA	4 cut(s)	147, 336, 420, 441
SatI	GCNGC	5 cut(s)	41, 74, 91, 608, 704
Sau3AI	GATC	7 cut(s)	4, 85, 205, 247, 493, 863, 874
Sau96I	GGNCC	2 cut(s)	436, 511
SchI	GAGTC	3 cut(s)	374, 456, 850
ScrFI	CCNGG	7 cut(s)	188, 639, 741, 792, 793, 803, 861
SetI	ASST	6 cut(s)	12, 399, 441, 520, 807, 986
SfaNI	GCATC	4 cut(s)	422, 604, 745, 763
SinI	GGWCC	1 cut(s)	436
SmaI	CCCGGG	1 cut(s)	793
SmiMI	CAYNNNNRTG	2 cut(s)	569, 813
SmlI	CTYRAG	2 cut(s)	227, 753
SmoI	CTYRAG	2 cut(s)	227, 753
Sse9I	AATT	3 cut(s)	65, 118, 294
SseBI	AGGCCT	1 cut(s)	133
SsiI	CCGC	5 cut(s)	36, 71, 78, 91, 287
SspMI	CTAG	3 cut(s)	165, 245, 845
StuI	AGGCCT	1 cut(s)	133
StyD4I	CCNGG	7 cut(s)	186, 637, 739, 790, 791, 801, 859
StyI	CCWWGG	1 cut(s)	479
TaqI	TCGA	3 cut(s)	208, 432, 828
TasI	AATT	3 cut(s)	65, 118, 294
TatI	WGTACW	1 cut(s)	973
TauI	GCSGC	1 cut(s)	93
TfiI	GAWTC	3 cut(s)	172, 634, 821
Tru1I	TTAA	4 cut(s)	147, 336, 420, 441
Tru9I	TTAA	4 cut(s)	147, 336, 420, 441
TseFI	GTSAC	1 cut(s)	832
TseI	GCWGC	4 cut(s)	40, 73, 607, 703
Tsp45I	GTSAC	1 cut(s)	832
TspDTI	ATGAA	1 cut(s)	510
TspGWI	ACGGA	1 cut(s)	36
TspMI	CCCGGG	1 cut(s)	791
VpaK11BI	GGWCC	1 cut(s)	436
XapI	RAATTY	1 cut(s)	65
XmaI	CCCGGG	1 cut(s)	791
XmiI	GTMKAC	1 cut(s)	327
XspI	CTAG	3 cut(s)	165, 245, 845
Zsp2I	ATGCAT	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.