Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001822

Physical Location & Seq

Genomic Coordinates Forward (+)

11230124 .. 11233434

Gene Structure 3311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG133100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTTCGTTTTATGTATCGTCTGCATGGTTGTTACTCGTAAGACTGATTGTTTGCTTATGTTTAAGAATTCTTGTTTTTGTTATGCGCAGCTGACAGTGGAGAAGAATGAGCTAAGAGAAGAGAAGGCATCTTTAAAATCTGATATTGAGAATCTCAATGCTCAATATCAGCAAAGAGTGAGGGTTATGTTTCCATGGGGGGCTATGGATCCTTCTGTTGTTATGGCTCCACCTTATTCATATCCAATGCCTGTAGCTGTTCCGCCCGGTCCAATTCCTATGCATCCATCGCTTCAGCCCTTTCCTTACTATCAAACTCAAAATCCAGCCACTGTTCCCAATTCTTGTCCAACTTTTGTCTCATATCCAACTCCTATCAATCGACCAATAGAACAGCCGTTACCCCAACCCCAATATGCATCTGTTTCACATGTTTCAAGTAAGCAAGATTCCAAAAGCAAGTCATCAGATCATCAAAGGGGAAGCAATGCTGAAAGATGTGATGGCTCCAATGATGTGGCAACAGAGCTTGTACTTAAGATGCCTGGATCTTCAGCACATCAGGAGTCATCTTGTGGGGCTAGGAAGGGGAAGCAATCACGAACGAAAGATAGGAACATTACAGATGGAAGCTGTTCGAGTAGGTATTCTTCATCTCAAGTTGTTCAGGAGAGTTCGTCTAACAGTGTAGGTGATATCCCCAAGACTAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

238

Amino Acids

26.29

Weight (kDa)

8.69

Isoelectric Point (pI)

69.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19860 AT3G19860 AT3G19860
fragaria_vesca	FvH4_1g11770 FvH4_2g02000 FvH4_2g02000 FvH4_2g02000
malus_domestica	MD02G1132000.v1.1 MD05G1115800.v1.1 MD15G1245200.v1.1
prunus_persica	Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.8G160700_v2.0.a1
pyrus_communis	pycom02g10290 pycom05g11010 pycom15g21570
rosa_chinensis	RchiOBHm_Chr2g0099391 RchiOBHm_Chr6g0245181
rosa_laevigata	RLG00000015318 RLG00000016878
rosa_multiflora	Rmu_co8372605.1_g000001 Rmu_sc0001288.1_g000004 Rmu_sc0002487.1_g000008 Rmu_sc0027529.1_g000004
rosa_roxburghii	Rroxscaffold_2G00143110 Rroxscaffold_3G00242190 Rroxscaffold_7G00215380
rosa_rugosa	Rorug02G0079200 Rorug02G0079300 Rorug02G0079400 Rorug05G0512600 Rorug05G0512700 Rorug05G0512800.1
rosa_samantha	Rh2AG129100 Rh2BG132100 Rh2CG132900 Rh2DG133100 Rh6AG027700 Rh6BG023800 Rh6CG022200 Rh6DG022300
rosa_wichuraiana	Rw2G009940 Rw6G002340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	87
AciI	CCGC	1 cut(s)	263
AclWI	GGATC	3 cut(s)	203, 216, 556
AcsI	RAATTY	1 cut(s)	67
AcuI	CTGAAG	2 cut(s)	278, 537
AfaI	GTAC	1 cut(s)	534
AflII	CTTAAG	1 cut(s)	536
AflIII	ACRYGT	1 cut(s)	430
AgsI	TTSAA	1 cut(s)	438
AjnI	CCWGG	1 cut(s)	544
AluBI	AGCT	5 cut(s)	91, 112, 257, 529, 633
AluI	AGCT	5 cut(s)	91, 112, 257, 529, 633
Alw26I	GTCTC	1 cut(s)	364
AlwI	GGATC	3 cut(s)	203, 216, 556
AlwNI	CAGNNNCTG	1 cut(s)	332
ApeKI	GCWGC	1 cut(s)	88
ApoI	RAATTY	1 cut(s)	67
ArsI	GACNNNNNNTTYG	2 cut(s)	34, 66
Asp700I	GAANNNNTTC	1 cut(s)	634
AspLEI	GCGC	1 cut(s)	88
AspS9I	GGNCC	1 cut(s)	269
AsuC2I	CCSGG	1 cut(s)	267
AsuHPI	GGTGA	1 cut(s)	704
AvaII	GGWCC	1 cut(s)	269
BamHI	GGATCC	1 cut(s)	208
BarI	GAAGNNNNNNTAC	2 cut(s)	634, 666
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	3 cut(s)	295, 497, 620
BceAI	ACGGC	1 cut(s)	382
BciT130I	CCWGG	1 cut(s)	546
BcnI	CCSGG	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	364
BfaI	CTAG	1 cut(s)	582
BfmI	CTRYAG	1 cut(s)	252
BfrI	CTTAAG	1 cut(s)	536
BisI	GCNGC	1 cut(s)	89
BlsI	GCNGC	1 cut(s)	90
Bme1390I	CCNGG	2 cut(s)	267, 546
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	269
BmiI	GGNNCC	3 cut(s)	210, 228, 508
BmrFI	CCNGG	2 cut(s)	267, 546
BmsI	GCATC	4 cut(s)	137, 292, 428, 531
BpuEI	CTTGAG	1 cut(s)	642
BpuMI	CCSGG	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	194
BsaXI	ACNNNNNCTCC	2 cut(s)	662, 692
Bse3DI	GCAATG	1 cut(s)	493
BseBI	CCWGG	1 cut(s)	546
BseDI	CCNNGG	1 cut(s)	194
BseGI	GGATG	1 cut(s)	283
BseMI	GCAATG	1 cut(s)	493
BseXI	GCAGC	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	267
BsmAI	GTCTC	1 cut(s)	364
Bsp143I	GATC	3 cut(s)	208, 469, 548
Bsp19I	CCATGG	1 cut(s)	194
BspACI	CCGC	1 cut(s)	263
BspLI	GGNNCC	3 cut(s)	210, 228, 508
BspPI	GGATC	3 cut(s)	203, 216, 556
BspTI	CTTAAG	1 cut(s)	536
BsrDI	GCAATG	1 cut(s)	493
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	3 cut(s)	208, 469, 548
BssT1I	CCWWGG	1 cut(s)	194
Bst2UI	CCWGG	1 cut(s)	546
Bst4CI	ACNGT	3 cut(s)	97, 334, 686
Bst6I	CTCTTC	1 cut(s)	114
BstAFI	CTTAAG	1 cut(s)	536
BstDEI	CTNAG	1 cut(s)	113
BstDSI	CCRYGG	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	283
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	3 cut(s)	211, 472, 551
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	3 cut(s)	208, 469, 548
BstMWI	GCNNNNNNNGC	1 cut(s)	289
BstNI	CCWGG	1 cut(s)	546
BstNSI	RCATGY	1 cut(s)	434
BstSCI	CCNGG	2 cut(s)	265, 544
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	1 cut(s)	100
BstX2I	RGATCY	2 cut(s)	208, 548
BstXI	CCANNNNNNTGG	1 cut(s)	517
BstYI	RGATCY	2 cut(s)	208, 548
BtgI	CCRYGG	1 cut(s)	194
BtgZI	GCGATG	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	3 cut(s)	102, 330, 691
CaiI	CAGNNNCTG	1 cut(s)	332
CfoI	GCGC	1 cut(s)	88
Cfr13I	GGNCC	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	533
CviAII	CATG	3 cut(s)	25, 195, 431
CviQI	GTAC	1 cut(s)	533
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	3 cut(s)	210, 471, 550
DpnII	GATC	3 cut(s)	208, 469, 548
DraI	TTTAAA	1 cut(s)	135
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
EciI	GGCGGA	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	194
Eco32I	GATATC	1 cut(s)	697
Eco47I	GGWCC	1 cut(s)	269
Eco57I	CTGAAG	2 cut(s)	278, 537
EcoRI	GAATTC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	544
EcoRV	GATATC	1 cut(s)	697
EcoT14I	CCWWGG	1 cut(s)	194
EcoT22I	ATGCAT	2 cut(s)	285, 421
ErhI	CCWWGG	1 cut(s)	194
FaeI	CATG	3 cut(s)	28, 198, 434
FatI	CATG	3 cut(s)	24, 194, 430
Fnu4HI	GCNGC	1 cut(s)	89
FokI	GGATG	1 cut(s)	270
Fsp4HI	GCNGC	1 cut(s)	89
FspBI	CTAG	1 cut(s)	582
FspI	TGCGCA	1 cut(s)	87
GlaI	GCGC	1 cut(s)	87
GluI	GCNGC	1 cut(s)	89
HapII	CCGG	1 cut(s)	267
HhaI	GCGC	1 cut(s)	88
Hin1II	CATG	3 cut(s)	28, 198, 434
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HinfI	GANTC	3 cut(s)	151, 449, 566
HpaII	CCGG	1 cut(s)	267
HphI	GGTGA	1 cut(s)	704
Hpy188I	TCNGA	2 cut(s)	142, 469
Hpy188III	TCNNGA	3 cut(s)	563, 600, 668
HpyAV	CCTTC	3 cut(s)	118, 222, 580
HpyCH4III	ACNGT	3 cut(s)	97, 334, 686
HpyCH4V	TGCA	3 cut(s)	24, 283, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	289
HpyF3I	CTNAG	1 cut(s)	113
Hsp92II	CATG	3 cut(s)	28, 198, 434
HspAI	GCGC	1 cut(s)	86
Kzo9I	GATC	3 cut(s)	208, 469, 548
LmnI	GCTCC	2 cut(s)	232, 512
LpnPI	CCDG	7 cut(s)	264, 280, 339, 531, 548, 558, 653
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	4 cut(s)	137, 292, 428, 531
MaeI	CTAG	1 cut(s)	582
MaeIII	GTNAC	2 cut(s)	31, 399
MalI	GATC	3 cut(s)	210, 471, 550
MboI	GATC	3 cut(s)	208, 469, 548
MboII	GAAGA	4 cut(s)	115, 131, 543, 642
MflI	RGATCY	2 cut(s)	208, 548
MluCI	AATT	3 cut(s)	67, 273, 340
MlyI	GAGTC	1 cut(s)	575
MmeI	TCCRAC	2 cut(s)	374, 392
MnlI	CCTC	1 cut(s)	174
Mph1103I	ATGCAT	2 cut(s)	285, 421
MroXI	GAANNNNTTC	1 cut(s)	634
MseI	TTAA	3 cut(s)	63, 134, 537
MspA1I	CMGCKG	1 cut(s)	91
MspCI	CTTAAG	1 cut(s)	536
MspI	CCGG	1 cut(s)	267
MspR9I	CCNGG	2 cut(s)	267, 546
MvaI	CCWGG	1 cut(s)	546
MwoI	GCNNNNNNNGC	1 cut(s)	289
NciI	CCSGG	1 cut(s)	267
NcoI	CCATGG	1 cut(s)	194
NdeII	GATC	3 cut(s)	208, 469, 548
NlaIII	CATG	3 cut(s)	28, 198, 434
NlaIV	GGNNCC	3 cut(s)	210, 228, 508
NsbI	TGCGCA	1 cut(s)	87
NsiI	ATGCAT	2 cut(s)	285, 421
NspI	RCATGY	1 cut(s)	434
PciI	ACATGT	1 cut(s)	430
PdmI	GAANNNNTTC	1 cut(s)	634
PfeI	GAWTC	2 cut(s)	151, 449
PkrI	GCNGC	1 cut(s)	90
PleI	GAGTC	1 cut(s)	574
PpsI	GAGTC	1 cut(s)	574
PscI	ACATGT	1 cut(s)	430
Psp6I	CCWGG	1 cut(s)	544
PspGI	CCWGG	1 cut(s)	544
PspN4I	GGNNCC	3 cut(s)	210, 228, 508
PspPI	GGNCC	1 cut(s)	269
PsrI	GAACNNNNNNTAC	2 cut(s)	384, 416
PstNI	CAGNNNCTG	1 cut(s)	332
PsuI	RGATCY	2 cut(s)	208, 548
PvuII	CAGCTG	1 cut(s)	91
RsaI	GTAC	1 cut(s)	534
RsaNI	GTAC	1 cut(s)	533
SaqAI	TTAA	3 cut(s)	63, 134, 537
SatI	GCNGC	1 cut(s)	89
Sau3AI	GATC	3 cut(s)	208, 469, 548
Sau96I	GGNCC	1 cut(s)	269
SchI	GAGTC	1 cut(s)	575
ScrFI	CCNGG	2 cut(s)	267, 546
SetI	ASST	8 cut(s)	93, 114, 235, 259, 531, 635, 647, 694
SfaNI	GCATC	4 cut(s)	137, 292, 428, 531
SfcI	CTRYAG	1 cut(s)	252
SinI	GGWCC	1 cut(s)	269
SmlI	CTYRAG	2 cut(s)	536, 657
SmoI	CTYRAG	2 cut(s)	536, 657
Sse9I	AATT	3 cut(s)	67, 273, 340
SsiI	CCGC	1 cut(s)	263
SspMI	CTAG	1 cut(s)	582
StyD4I	CCNGG	2 cut(s)	265, 544
StyI	CCWWGG	1 cut(s)	194
TaaI	ACNGT	3 cut(s)	97, 334, 686
TaqI	TCGA	2 cut(s)	382, 638
TasI	AATT	3 cut(s)	67, 273, 340
TatI	WGTACW	1 cut(s)	532
TfiI	GAWTC	2 cut(s)	151, 449
Tru1I	TTAA	3 cut(s)	63, 134, 537
Tru9I	TTAA	3 cut(s)	63, 134, 537
TscAI	CASTG	3 cut(s)	102, 337, 691
TseI	GCWGC	1 cut(s)	88
TspDTI	ATGAA	2 cut(s)	228, 642
TspRI	CASTG	3 cut(s)	102, 337, 691
Vha464I	CTTAAG	1 cut(s)	536
VpaK11BI	GGWCC	1 cut(s)	269
XapI	RAATTY	1 cut(s)	67
XceI	RCATGY	1 cut(s)	434
XmnI	GAANNNNTTC	1 cut(s)	634
XspI	CTAG	1 cut(s)	582
Zsp2I	ATGCAT	2 cut(s)	285, 421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.