Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8372605.1

Orthogroup ID

OG0001822

Physical Location & Seq

Genomic Coordinates Reverse (-)

92 .. 1130

Gene Structure 1039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8372605.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 761 bp

atccagacagacccaaaaatgacaaggcaaccattctagctgatacaattcaagtgctaaaggatttgtcatccgaagtagacaaacttaaaactgagtgcacttcgttaacagaagagtctcgtgagttgacaaatgagaagaacgagttgagagaagagaaggcatctcttaaaactgacattgagaaccttaacgctcagtaccagcagagactcagggccatgttcccttggggtgctgtggatcactcggttgtaatggccccaccttcatatccatttcctatgccaatgccaatgcctccagggtcaattcccatgcatccccatatgcagccatacccttatttcggaaatcaaaatcccggggtcattcctaacccatgttcaacttttgttccatatatcacccctaatactctggttgaacagcagcccaccccgtatgtatctccagttgtgcatccagcaactcagtctcatgtttcagtcaaacaagattccagaaacaaatcatctgggacaagtagaattgacaaaagtgaagattcaaacgatgtcacgacagaactagaactgaagacaccagggtcaacagctgatcaggatttatcaccagtaaaaagaaaatctcagaagtcagcaaggaaagagcttaaggttactgaagggacttcttcaagtagatgttcgtcttctcatagtgcacagggtagctcatctaacagtgtagttggtggcagaaaggatgatgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

252

Amino Acids

27.74

Weight (kDa)

6.12

Isoelectric Point (pI)

56.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19860 AT3G19860 AT3G19860
fragaria_vesca	FvH4_1g11770 FvH4_2g02000 FvH4_2g02000 FvH4_2g02000
malus_domestica	MD02G1132000.v1.1 MD05G1115800.v1.1 MD15G1245200.v1.1
prunus_persica	Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.8G160700_v2.0.a1
pyrus_communis	pycom02g10290 pycom05g11010 pycom15g21570
rosa_chinensis	RchiOBHm_Chr2g0099391 RchiOBHm_Chr6g0245181
rosa_laevigata	RLG00000015318 RLG00000016878
rosa_multiflora	Rmu_co8372605.1_g000001 Rmu_sc0001288.1_g000004 Rmu_sc0002487.1_g000008 Rmu_sc0027529.1_g000004
rosa_roxburghii	Rroxscaffold_2G00143110 Rroxscaffold_3G00242190 Rroxscaffold_7G00215380
rosa_rugosa	Rorug02G0079200 Rorug02G0079300 Rorug02G0079400 Rorug05G0512600 Rorug05G0512700 Rorug05G0512800.1
rosa_samantha	Rh2AG129100 Rh2BG132100 Rh2CG132900 Rh2DG133100 Rh6AG027700 Rh6BG023800 Rh6CG022200 Rh6DG022300
rosa_wichuraiana	Rw2G009940 Rw6G002340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	591
AccI	GTMKAC	1 cut(s)	80
AclWI	GGATC	1 cut(s)	254
AcuI	CTGAAG	2 cut(s)	601, 689
AfaI	GTAC	1 cut(s)	205
AfiI	CCNNNNNNNGG	1 cut(s)	352
AflII	CTTAAG	1 cut(s)	658
AgsI	TTSAA	5 cut(s)	52, 392, 430, 554, 683
AjnI	CCWGG	2 cut(s)	306, 588
AluBI	AGCT	4 cut(s)	40, 601, 657, 719
AluI	AGCT	4 cut(s)	40, 601, 657, 719
Alw21I	GWGCWC	2 cut(s)	103, 711
Alw26I	GTCTC	3 cut(s)	125, 207, 485
Alw44I	GTGCAC	2 cut(s)	99, 707
AlwI	GGATC	1 cut(s)	254
Ama87I	CYCGRG	1 cut(s)	367
AoxI	GGCC	2 cut(s)	221, 263
ApaLI	GTGCAC	2 cut(s)	99, 707
ApeKI	GCWGC	2 cut(s)	336, 435
AspS9I	GGNCC	2 cut(s)	221, 264
AsuC2I	CCSGG	2 cut(s)	368, 369
AsuHPI	GGTGA	2 cut(s)	402, 608
AvaI	CYCGRG	1 cut(s)	367
BaeGI	GKGCMC	2 cut(s)	103, 711
BauI	CACGAG	1 cut(s)	122
BbsI	GAAGAC	2 cut(s)	589, 689
Bbv12I	GWGCWC	2 cut(s)	103, 711
BbvI	GCAGC	2 cut(s)	348, 447
BciT130I	CCWGG	2 cut(s)	308, 590
BclI	TGATCA	1 cut(s)	603
BcnI	CCSGG	2 cut(s)	368, 369
BcoDI	GTCTC	3 cut(s)	125, 207, 485
BfaI	CTAG	2 cut(s)	37, 574
BfrI	CTTAAG	1 cut(s)	658
BisI	GCNGC	2 cut(s)	337, 436
BlsI	GCNGC	2 cut(s)	338, 437
Bme1390I	CCNGG	4 cut(s)	308, 368, 369, 590
BmeT110I	CYCGRG	1 cut(s)	367
BmgT120I	GGNCC	2 cut(s)	221, 264
BmiI	GGNNCC	1 cut(s)	266
BmrFI	CCNGG	4 cut(s)	308, 368, 369, 590
BmsI	GCATC	3 cut(s)	175, 333, 474
BpiI	GAAGAC	2 cut(s)	589, 689
BpmI	CTGGAG	2 cut(s)	290, 440
BpuMI	CCSGG	2 cut(s)	368, 369
BsaJI	CCNNGG	5 cut(s)	232, 307, 367, 368, 589
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse1I	ACTGG	2 cut(s)	457, 619
BseBI	CCWGG	2 cut(s)	308, 590
BseDI	CCNNGG	5 cut(s)	232, 307, 367, 368, 589
BseGI	GGATG	4 cut(s)	70, 324, 465, 756
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseMII	CTCAG	5 cut(s)	86, 214, 231, 490, 649
BseNI	ACTGG	2 cut(s)	457, 619
BseSI	GKGCMC	2 cut(s)	103, 711
BseXI	GCAGC	2 cut(s)	348, 447
BshFI	GGCC	2 cut(s)	223, 265
BsiHKAI	GWGCWC	2 cut(s)	103, 711
BsiHKCI	CYCGRG	1 cut(s)	367
BsiSI	CCGG	1 cut(s)	368
BslFI	GGGAC	2 cut(s)	537, 687
BslI	CCNNNNNNNGG	1 cut(s)	352
BsmAI	GTCTC	3 cut(s)	125, 207, 485
BsmFI	GGGAC	2 cut(s)	537, 687
BsnI	GGCC	2 cut(s)	223, 265
BsoBI	CYCGRG	1 cut(s)	367
Bsp1286I	GDGCHC	2 cut(s)	103, 711
Bsp143I	GATC	2 cut(s)	246, 603
BspANI	GGCC	2 cut(s)	223, 265
BspCNI	CTCAG	5 cut(s)	87, 213, 230, 489, 648
BspLI	GGNNCC	1 cut(s)	266
BspPI	GGATC	1 cut(s)	254
BspTI	CTTAAG	1 cut(s)	658
BsrI	ACTGG	2 cut(s)	457, 619
BssECI	CCNNGG	5 cut(s)	232, 307, 367, 368, 589
BssMI	GATC	2 cut(s)	246, 603
BssSI	CACGAG	1 cut(s)	122
BssT1I	CCWWGG	1 cut(s)	232
Bst2BI	CACGAG	1 cut(s)	122
Bst2UI	CCWGG	2 cut(s)	308, 590
Bst4CI	ACNGT	1 cut(s)	730
Bst6I	CTCTTC	2 cut(s)	110, 152
BstAFI	CTTAAG	1 cut(s)	658
BstDEI	CTNAG	5 cut(s)	95, 200, 217, 476, 635
BstF5I	GGATG	4 cut(s)	70, 324, 465, 756
BstKTI	GATC	2 cut(s)	249, 606
BstMAI	GTCTC	3 cut(s)	125, 207, 485
BstMBI	GATC	2 cut(s)	246, 603
BstNI	CCWGG	2 cut(s)	308, 590
BstSCI	CCNGG	4 cut(s)	306, 366, 367, 588
BstSLI	GKGCMC	2 cut(s)	103, 711
BstV1I	GCAGC	2 cut(s)	348, 447
BstV2I	GAAGAC	2 cut(s)	589, 689
BsuRI	GGCC	2 cut(s)	223, 265
BtsCI	GGATG	4 cut(s)	70, 324, 465, 756
BtsIMutI	CAGTG	1 cut(s)	735
Cfr13I	GGNCC	2 cut(s)	221, 264
Cfr9I	CCCGGG	1 cut(s)	367
Csp6I	GTAC	1 cut(s)	204
CviAII	CATG	4 cut(s)	225, 321, 386, 484
CviJI	RGCY	8 cut(s)	40, 223, 265, 339, 438, 601, 657, 719
CviKI_1	RGCY	8 cut(s)	40, 223, 265, 339, 438, 601, 657, 719
CviQI	GTAC	1 cut(s)	204
DdeI	CTNAG	5 cut(s)	95, 200, 217, 476, 635
DpnI	GATC	2 cut(s)	248, 605
DpnII	GATC	2 cut(s)	246, 603
DrdI	GACNNNNNNGTC	1 cut(s)	591
DseDI	GACNNNNNNGTC	1 cut(s)	591
Eam1104I	CTCTTC	2 cut(s)	110, 152
EarI	CTCTTC	2 cut(s)	110, 152
Eco130I	CCWWGG	1 cut(s)	232
Eco57I	CTGAAG	2 cut(s)	601, 689
Eco88I	CYCGRG	1 cut(s)	367
EcoRII	CCWGG	2 cut(s)	306, 588
EcoT14I	CCWWGG	1 cut(s)	232
EcoT22I	ATGCAT	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	232
FaeI	CATG	4 cut(s)	228, 324, 389, 487
FaqI	GGGAC	2 cut(s)	537, 687
FatI	CATG	4 cut(s)	224, 320, 385, 483
FauNDI	CATATG	1 cut(s)	332
FbaI	TGATCA	1 cut(s)	603
FblI	GTMKAC	1 cut(s)	80
Fnu4HI	GCNGC	2 cut(s)	337, 436
FokI	GGATG	3 cut(s)	57, 311, 452
Fsp4HI	GCNGC	2 cut(s)	337, 436
FspBI	CTAG	2 cut(s)	37, 574
GluI	GCNGC	2 cut(s)	337, 436
GsuI	CTGGAG	2 cut(s)	290, 440
HaeIII	GGCC	2 cut(s)	223, 265
HapII	CCGG	1 cut(s)	368
Hin1II	CATG	4 cut(s)	228, 324, 389, 487
HincII	GTYRAC	3 cut(s)	110, 131, 596
HindII	GTYRAC	3 cut(s)	110, 131, 596
HinfI	GANTC	4 cut(s)	118, 215, 502, 550
HpaI	GTTAAC	1 cut(s)	110
HpaII	CCGG	1 cut(s)	368
HphI	GGTGA	2 cut(s)	402, 608
Hpy166II	GTNNAC	6 cut(s)	81, 101, 110, 131, 596, 709
Hpy188I	TCNGA	3 cut(s)	75, 355, 638
Hpy188III	TCNNGA	5 cut(s)	4, 124, 506, 564, 607
Hpy8I	GTNNAC	6 cut(s)	81, 101, 110, 131, 596, 709
HpyAV	CCTTC	3 cut(s)	156, 281, 664
HpyCH4III	ACNGT	1 cut(s)	730
HpyCH4V	TGCA	5 cut(s)	101, 324, 336, 465, 709
HpyF3I	CTNAG	5 cut(s)	95, 200, 217, 476, 635
Hsp92II	CATG	4 cut(s)	228, 324, 389, 487
Ksp22I	TGATCA	1 cut(s)	603
KspAI	GTTAAC	1 cut(s)	110
Kzo9I	GATC	2 cut(s)	246, 603
Lsp1109I	GCAGC	2 cut(s)	348, 447
LweI	GCATC	3 cut(s)	175, 333, 474
MaeI	CTAG	2 cut(s)	37, 574
MaeIII	GTNAC	2 cut(s)	561, 663
MalI	GATC	2 cut(s)	248, 605
MboI	GATC	2 cut(s)	246, 603
MboII	GAAGA	7 cut(s)	127, 153, 169, 559, 594, 671, 689
MhlI	GDGCHC	2 cut(s)	103, 711
MluCI	AATT	3 cut(s)	47, 314, 533
MlyI	GAGTC	2 cut(s)	127, 209
MnlI	CCTC	1 cut(s)	314
Mph1103I	ATGCAT	1 cut(s)	326
MseI	TTAA	5 cut(s)	89, 109, 173, 194, 659
MspA1I	CMGCKG	1 cut(s)	601
MspCI	CTTAAG	1 cut(s)	658
MspI	CCGG	1 cut(s)	368
MspR9I	CCNGG	4 cut(s)	308, 368, 369, 590
MvaI	CCWGG	2 cut(s)	308, 590
NciI	CCSGG	2 cut(s)	368, 369
NdeI	CATATG	1 cut(s)	332
NdeII	GATC	2 cut(s)	246, 603
NlaIII	CATG	4 cut(s)	228, 324, 389, 487
NlaIV	GGNNCC	1 cut(s)	266
NmuCI	GTSAC	1 cut(s)	561
NsiI	ATGCAT	1 cut(s)	326
PfeI	GAWTC	2 cut(s)	502, 550
PkrI	GCNGC	2 cut(s)	338, 437
PleI	GAGTC	2 cut(s)	126, 209
PpsI	GAGTC	2 cut(s)	126, 209
Psp6I	CCWGG	2 cut(s)	306, 588
PspGI	CCWGG	2 cut(s)	306, 588
PspN4I	GGNNCC	1 cut(s)	266
PspPI	GGNCC	2 cut(s)	221, 264
PvuII	CAGCTG	1 cut(s)	601
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
SaqAI	TTAA	5 cut(s)	89, 109, 173, 194, 659
SatI	GCNGC	2 cut(s)	337, 436
Sau3AI	GATC	2 cut(s)	246, 603
Sau96I	GGNCC	2 cut(s)	221, 264
SchI	GAGTC	2 cut(s)	127, 209
ScrFI	CCNGG	4 cut(s)	308, 368, 369, 590
SduI	GDGCHC	2 cut(s)	103, 711
SetI	ASST	7 cut(s)	42, 194, 273, 603, 659, 665, 721
SfaNI	GCATC	3 cut(s)	175, 333, 474
SmaI	CCCGGG	1 cut(s)	369
SmlI	CTYRAG	1 cut(s)	658
SmoI	CTYRAG	1 cut(s)	658
Sse9I	AATT	3 cut(s)	47, 314, 533
SspMI	CTAG	2 cut(s)	37, 574
StyD4I	CCNGG	4 cut(s)	306, 366, 367, 588
StyI	CCWWGG	1 cut(s)	232
TaaI	ACNGT	1 cut(s)	730
TasI	AATT	3 cut(s)	47, 314, 533
TfiI	GAWTC	2 cut(s)	502, 550
Tru1I	TTAA	5 cut(s)	89, 109, 173, 194, 659
Tru9I	TTAA	5 cut(s)	89, 109, 173, 194, 659
TscAI	CASTG	1 cut(s)	735
TseFI	GTSAC	1 cut(s)	561
TseI	GCWGC	2 cut(s)	336, 435
Tsp45I	GTSAC	1 cut(s)	561
TspDTI	ATGAA	1 cut(s)	263
TspMI	CCCGGG	1 cut(s)	367
TspRI	CASTG	1 cut(s)	735
Vha464I	CTTAAG	1 cut(s)	658
VneI	GTGCAC	2 cut(s)	99, 707
XmaI	CCCGGG	1 cut(s)	367
XmiI	GTMKAC	1 cut(s)	80
XspI	CTAG	2 cut(s)	37, 574
Zsp2I	ATGCAT	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.