Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001822

Physical Location & Seq

Genomic Coordinates Forward (+)

1693564 .. 1696989

Gene Structure 3426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g02000.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGCAGACTCTAATGGATCAGCTCAGACCCGAATTCCCTCCTCCCTCTTTCGATTCCCTCCTGCCCTCCAATCGCACCTTACCCAATTCCAGCCAAATACCGGAAGGGGAAGCTAAGGATGGTGTTGCTGCTAGGAAGATGCAGAAGGCGGACCGGGAGAAATTGAGGAGGGATCGACTCAATGAGCATTTTATGGAGTTGGGAAACGTGTTAGATCCAGACAGACCCAAAAATGACAAGGCAACCATTCTAGCTGATACAATTCAAGTGCTAAAGGATTTGTCATCCGAAGTAGACAAACTTAAAACGGATTGCACTTCGCTAACGGAAGAGTCTCGTGAGTTGACAAATGAGAAGAACGAGTTGAGAGAAGAGAAGGCAGCTCTTAAAACTGACATCGAAAACCTTAATGCTCAGTACCAGCAGAGACTCAGGACCGTGTTCCCTTGGGGTGCTGTGGATCACTCGGTTGTAATGGCTGCACCTTCATATCCATTTCCTATGCCGATGCCAATGCCAATGCCTCCAGGGTCAATTCCCATGCATCCCCATATGCAGCCATACCCTTATTTCGGAAATCAGAATCCCGGTGTCATTCCCAACCCCTGTTCAACTTTTGTTCCATATATCACCCCTAATACTCTGGTTGAACAGCAACACACCCCTTATGCGTCTCCAGTTGTGCATCCAGCAACTCAGTCTCATGTTTCAGTCAAAAAAGATTCTCGAAACAAATCATCTGGGGCGAGTAGAAATGACAGAAGTGAAGATTCTAATGATGTCACGACAGATCTAGAATTGAAGACTCCTGGTTCAACTGATCAGGATTTATCACCAGTACAAAGAAAATCTCAGAAGTCAGCAAGGAAAGAACTTAAGGGTACAGAAGGGAGTTCTTCAAGTAAATGTTCCTCTTCTCATAGTGCACAGGGTAGCTCATCTAACAGCGTAGTTGGTGGCACAAAGGATGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

326

Amino Acids

35.94

Weight (kDa)

5.95

Isoelectric Point (pI)

53.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_IRO3	PF23177	44 - 118	6.1e-18	Iron-related transcription factor 3 bHLH domain
HLH	PF00010	45 - 94	6.6e-10	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19860 AT3G19860 AT3G19860
fragaria_vesca	FvH4_1g11770 FvH4_2g02000 FvH4_2g02000 FvH4_2g02000
malus_domestica	MD02G1132000.v1.1 MD05G1115800.v1.1 MD15G1245200.v1.1
prunus_persica	Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.8G160700_v2.0.a1
pyrus_communis	pycom02g10290 pycom05g11010 pycom15g21570
rosa_chinensis	RchiOBHm_Chr2g0099391 RchiOBHm_Chr6g0245181
rosa_laevigata	RLG00000015318 RLG00000016878
rosa_multiflora	Rmu_co8372605.1_g000001 Rmu_sc0001288.1_g000004 Rmu_sc0002487.1_g000008 Rmu_sc0027529.1_g000004
rosa_roxburghii	Rroxscaffold_2G00143110 Rroxscaffold_3G00242190 Rroxscaffold_7G00215380
rosa_rugosa	Rorug02G0079200 Rorug02G0079300 Rorug02G0079400 Rorug05G0512600 Rorug05G0512700 Rorug05G0512800.1
rosa_samantha	Rh2AG129100 Rh2BG132100 Rh2CG132900 Rh2DG133100 Rh6AG027700 Rh6BG023800 Rh6CG022200 Rh6DG022300
rosa_wichuraiana	Rw2G009940 Rw6G002340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	294
AciI	CCGC	1 cut(s)	149
AclWI	GGATC	4 cut(s)	24, 180, 209, 468
AcsI	RAATTY	1 cut(s)	32
AfaI	GTAC	3 cut(s)	419, 840, 883
AfiI	CCNNNNNNNGG	2 cut(s)	100, 572
AflII	CTTAAG	1 cut(s)	875
AflIII	ACRYGT	1 cut(s)	207
AgsI	TTSAA	6 cut(s)	266, 612, 650, 802, 816, 900
AjnI	CCWGG	2 cut(s)	526, 808
AluBI	AGCT	5 cut(s)	22, 113, 254, 383, 936
AluI	AGCT	5 cut(s)	22, 113, 254, 383, 936
Alw21I	GWGCWC	1 cut(s)	928
Alw26I	GTCTC	4 cut(s)	339, 421, 678, 705
Alw44I	GTGCAC	1 cut(s)	924
AlwI	GGATC	4 cut(s)	24, 180, 209, 468
ApaLI	GTGCAC	1 cut(s)	924
ApeKI	GCWGC	4 cut(s)	128, 380, 479, 556
ApoI	RAATTY	1 cut(s)	32
AspS9I	GGNCC	2 cut(s)	151, 435
AsuC2I	CCSGG	2 cut(s)	155, 588
AsuHPI	GGTGA	2 cut(s)	622, 825
AvaII	GGWCC	2 cut(s)	151, 435
BaeGI	GKGCMC	1 cut(s)	928
BauI	CACGAG	1 cut(s)	336
BbsI	GAAGAC	1 cut(s)	809
Bbv12I	GWGCWC	1 cut(s)	928
BbvI	GCAGC	4 cut(s)	115, 392, 466, 568
BccI	CCATC	1 cut(s)	113
BcgI	CGANNNNNNTGC	2 cut(s)	496, 530
BciT130I	CCWGG	2 cut(s)	528, 810
BclI	TGATCA	1 cut(s)	820
BcnI	CCSGG	2 cut(s)	155, 588
BcoDI	GTCTC	4 cut(s)	339, 421, 678, 705
BfaI	CTAG	3 cut(s)	132, 251, 794
BfrI	CTTAAG	1 cut(s)	875
BglII	AGATCT	1 cut(s)	790
BisI	GCNGC	4 cut(s)	129, 381, 480, 557
BlsI	GCNGC	4 cut(s)	130, 382, 481, 558
Bme1390I	CCNGG	4 cut(s)	155, 528, 588, 810
Bme18I	GGWCC	2 cut(s)	151, 435
BmgT120I	GGNCC	2 cut(s)	151, 435
BmrFI	CCNGG	4 cut(s)	155, 528, 588, 810
BmsI	GCATC	4 cut(s)	129, 498, 553, 694
BpiI	GAAGAC	1 cut(s)	809
BpmI	CTGGAG	2 cut(s)	510, 660
Bpu10I	CCTNAGC	1 cut(s)	114
BpuMI	CCSGG	2 cut(s)	155, 588
BsaJI	CCNNGG	2 cut(s)	446, 527
BsaWI	WCCGGW	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 572
Bse1I	ACTGG	2 cut(s)	677, 836
BseBI	CCWGG	2 cut(s)	528, 810
BseDI	CCNNGG	2 cut(s)	446, 527
BseGI	GGATG	5 cut(s)	124, 284, 544, 685, 973
BseLI	CCNNNNNNNGG	2 cut(s)	100, 572
BseMII	CTCAG	5 cut(s)	37, 428, 445, 710, 866
BseNI	ACTGG	2 cut(s)	677, 836
BseRI	GAGGAG	2 cut(s)	30, 181
BseSI	GKGCMC	1 cut(s)	928
BseXI	GCAGC	4 cut(s)	115, 392, 466, 568
BsgI	GTGCAG	1 cut(s)	465
BsiHKAI	GWGCWC	1 cut(s)	928
BsiSI	CCGG	3 cut(s)	101, 154, 588
BslI	CCNNNNNNNGG	2 cut(s)	100, 572
BsmAI	GTCTC	4 cut(s)	339, 421, 678, 705
BsmBI	CGTCTC	1 cut(s)	678
Bsp1286I	GDGCHC	1 cut(s)	928
Bsp143I	GATC	6 cut(s)	16, 172, 214, 460, 790, 820
BspACI	CCGC	1 cut(s)	149
BspCNI	CTCAG	5 cut(s)	36, 427, 444, 709, 865
BspPI	GGATC	4 cut(s)	24, 180, 209, 468
BspTI	CTTAAG	1 cut(s)	875
BsrI	ACTGG	2 cut(s)	677, 836
BssECI	CCNNGG	2 cut(s)	446, 527
BssMI	GATC	6 cut(s)	16, 172, 214, 460, 790, 820
BssSI	CACGAG	1 cut(s)	336
BssT1I	CCWWGG	1 cut(s)	446
Bst2BI	CACGAG	1 cut(s)	336
Bst2UI	CCWGG	2 cut(s)	528, 810
Bst4CI	ACNGT	1 cut(s)	439
Bst6I	CTCTTC	3 cut(s)	324, 366, 919
BstAFI	CTTAAG	1 cut(s)	875
BstDEI	CTNAG	6 cut(s)	23, 114, 414, 431, 696, 852
BstF5I	GGATG	5 cut(s)	124, 284, 544, 685, 973
BstKTI	GATC	6 cut(s)	19, 175, 217, 463, 793, 823
BstMAI	GTCTC	4 cut(s)	339, 421, 678, 705
BstMBI	GATC	6 cut(s)	16, 172, 214, 460, 790, 820
BstNI	CCWGG	2 cut(s)	528, 810
BstSCI	CCNGG	4 cut(s)	153, 526, 586, 808
BstSLI	GKGCMC	1 cut(s)	928
BstV1I	GCAGC	4 cut(s)	115, 392, 466, 568
BstV2I	GAAGAC	1 cut(s)	809
BstX2I	RGATCY	2 cut(s)	214, 790
BstYI	RGATCY	2 cut(s)	214, 790
BtsCI	GGATG	5 cut(s)	124, 284, 544, 685, 973
Cfr13I	GGNCC	2 cut(s)	151, 435
CpoI	CGGWCCG	1 cut(s)	151
CseI	GACGC	1 cut(s)	660
Csp6I	GTAC	3 cut(s)	418, 839, 882
CspI	CGGWCCG	1 cut(s)	151
CviAII	CATG	2 cut(s)	541, 704
CviJI	RGCY	8 cut(s)	22, 93, 113, 254, 383, 479, 559, 936
CviKI_1	RGCY	8 cut(s)	22, 93, 113, 254, 383, 479, 559, 936
CviQI	GTAC	3 cut(s)	418, 839, 882
DdeI	CTNAG	6 cut(s)	23, 114, 414, 431, 696, 852
DpnI	GATC	6 cut(s)	18, 174, 216, 462, 792, 822
DpnII	GATC	6 cut(s)	16, 172, 214, 460, 790, 820
Eam1104I	CTCTTC	3 cut(s)	324, 366, 919
EarI	CTCTTC	3 cut(s)	324, 366, 919
EciI	GGCGGA	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	446
Eco47I	GGWCC	2 cut(s)	151, 435
EcoRI	GAATTC	1 cut(s)	32
EcoRII	CCWGG	2 cut(s)	526, 808
EcoT14I	CCWWGG	1 cut(s)	446
EcoT22I	ATGCAT	1 cut(s)	546
ErhI	CCWWGG	1 cut(s)	446
Esp3I	CGTCTC	1 cut(s)	678
FaeI	CATG	2 cut(s)	544, 707
FatI	CATG	2 cut(s)	540, 703
FauNDI	CATATG	1 cut(s)	552
FbaI	TGATCA	1 cut(s)	820
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	4 cut(s)	129, 381, 480, 557
FokI	GGATG	4 cut(s)	131, 271, 531, 672
Fsp4HI	GCNGC	4 cut(s)	129, 381, 480, 557
FspBI	CTAG	3 cut(s)	132, 251, 794
GluI	GCNGC	4 cut(s)	129, 381, 480, 557
GsuI	CTGGAG	2 cut(s)	510, 660
HapII	CCGG	3 cut(s)	101, 154, 588
HgaI	GACGC	1 cut(s)	660
Hin1II	CATG	2 cut(s)	544, 707
HincII	GTYRAC	1 cut(s)	345
HindII	GTYRAC	1 cut(s)	345
HinfI	GANTC	9 cut(s)	7, 53, 177, 332, 429, 583, 722, 770, 805
HpaII	CCGG	3 cut(s)	101, 154, 588
HphI	GGTGA	2 cut(s)	622, 825
Hpy166II	GTNNAC	3 cut(s)	295, 345, 926
Hpy188I	TCNGA	5 cut(s)	26, 289, 575, 582, 855
Hpy188III	TCNNGA	7 cut(s)	218, 338, 433, 726, 784, 794, 824
Hpy8I	GTNNAC	3 cut(s)	295, 345, 926
HpyAV	CCTTC	5 cut(s)	98, 139, 370, 495, 881
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	8 cut(s)	4, 142, 315, 482, 544, 556, 685, 926
HpyF3I	CTNAG	6 cut(s)	23, 114, 414, 431, 696, 852
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	2 cut(s)	544, 707
Ksp22I	TGATCA	1 cut(s)	820
Kzo9I	GATC	6 cut(s)	16, 172, 214, 460, 790, 820
Lsp1109I	GCAGC	4 cut(s)	115, 392, 466, 568
LweI	GCATC	4 cut(s)	129, 498, 553, 694
MaeI	CTAG	3 cut(s)	132, 251, 794
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	781
MalI	GATC	6 cut(s)	18, 174, 216, 462, 792, 822
MboI	GATC	6 cut(s)	16, 172, 214, 460, 790, 820
MboII	GAAGA	8 cut(s)	148, 341, 367, 383, 779, 814, 888, 906
MflI	RGATCY	2 cut(s)	214, 790
MhlI	GDGCHC	1 cut(s)	928
MluCI	AATT	6 cut(s)	32, 85, 161, 261, 534, 797
MlyI	GAGTC	4 cut(s)	171, 341, 423, 799
MnlI	CCTC	9 cut(s)	48, 51, 55, 68, 76, 159, 162, 534, 922
Mph1103I	ATGCAT	1 cut(s)	546
MseI	TTAA	4 cut(s)	303, 387, 408, 876
MspCI	CTTAAG	1 cut(s)	875
MspI	CCGG	3 cut(s)	101, 154, 588
MspR9I	CCNGG	4 cut(s)	155, 528, 588, 810
MvaI	CCWGG	2 cut(s)	528, 810
NciI	CCSGG	2 cut(s)	155, 588
NdeI	CATATG	1 cut(s)	552
NdeII	GATC	6 cut(s)	16, 172, 214, 460, 790, 820
NlaIII	CATG	2 cut(s)	544, 707
NmuCI	GTSAC	1 cut(s)	781
NsiI	ATGCAT	1 cut(s)	546
PfeI	GAWTC	4 cut(s)	53, 583, 722, 770
PkrI	GCNGC	4 cut(s)	130, 382, 481, 558
PleI	GAGTC	4 cut(s)	171, 340, 423, 799
PpsI	GAGTC	4 cut(s)	171, 340, 423, 799
Psp6I	CCWGG	2 cut(s)	526, 808
PspGI	CCWGG	2 cut(s)	526, 808
PspPI	GGNCC	2 cut(s)	151, 435
PsuI	RGATCY	2 cut(s)	214, 790
RsaI	GTAC	3 cut(s)	419, 840, 883
RsaNI	GTAC	3 cut(s)	418, 839, 882
Rsr2I	CGGWCCG	1 cut(s)	151
RsrII	CGGWCCG	1 cut(s)	151
SaqAI	TTAA	4 cut(s)	303, 387, 408, 876
SatI	GCNGC	4 cut(s)	129, 381, 480, 557
Sau3AI	GATC	6 cut(s)	16, 172, 214, 460, 790, 820
Sau96I	GGNCC	2 cut(s)	151, 435
SchI	GAGTC	4 cut(s)	171, 341, 423, 799
ScrFI	CCNGG	4 cut(s)	155, 528, 588, 810
SduI	GDGCHC	1 cut(s)	928
SetI	ASST	9 cut(s)	24, 80, 115, 210, 256, 385, 408, 487, 938
SfaNI	GCATC	4 cut(s)	129, 498, 553, 694
SinI	GGWCC	2 cut(s)	151, 435
SmlI	CTYRAG	1 cut(s)	875
SmoI	CTYRAG	1 cut(s)	875
Sse9I	AATT	6 cut(s)	32, 85, 161, 261, 534, 797
SsiI	CCGC	1 cut(s)	149
SspMI	CTAG	3 cut(s)	132, 251, 794
StyD4I	CCNGG	4 cut(s)	153, 526, 586, 808
StyI	CCWWGG	1 cut(s)	446
TaaI	ACNGT	1 cut(s)	439
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	4 cut(s)	51, 175, 399, 727
TasI	AATT	6 cut(s)	32, 85, 161, 261, 534, 797
TatI	WGTACW	1 cut(s)	838
TfiI	GAWTC	4 cut(s)	53, 583, 722, 770
Tru1I	TTAA	4 cut(s)	303, 387, 408, 876
Tru9I	TTAA	4 cut(s)	303, 387, 408, 876
TseFI	GTSAC	1 cut(s)	781
TseI	GCWGC	4 cut(s)	128, 380, 479, 556
Tsp45I	GTSAC	1 cut(s)	781
TspDTI	ATGAA	1 cut(s)	477
TspGWI	ACGGA	2 cut(s)	323, 341
Vha464I	CTTAAG	1 cut(s)	875
VneI	GTGCAC	1 cut(s)	924
VpaK11BI	GGWCC	2 cut(s)	151, 435
XapI	RAATTY	1 cut(s)	32
XbaI	TCTAGA	1 cut(s)	793
XmiI	GTMKAC	1 cut(s)	294
XspI	CTAG	3 cut(s)	132, 251, 794
Zsp2I	ATGCAT	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.