Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001822

Physical Location & Seq

Genomic Coordinates Forward (+)

15546373 .. 15547938

Gene Structure 1566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g21570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGATCCTTGGAAATCCGACGATTTCTCAGCTGCTTCAGCTCCTCCTTCTACTCACCCTCTCCCCTCCAATCGTCCCCACAACTCCAACTCTGATTCCAGGCAAAGACTTGATGCGGAGACGAAGGACCCGATTGTTGCTAGAAAGGTTCAGAAAGCAGACCGCGAAAAGGTGAGGAGGGATCGATTGAATGAGCATTTTTTTGAGTTGGGCAACACATTAGATCCGGATAGGCCCAAGAACGATAAGGCAACCATCCTTACCGACACAATTCAAATGTTGAAGGATTTAACTTCCGATGTCAACAAACTAAAGGCTGAATGTGCTGCACTTACTGATGAATCCCGTGAGCTGACGCAGGAGAAGAACGAGCTAAGAGAAGAGAAGGCATCTCTAAAATCCGATATTGAAAATCTAAATGTTCAGTATCAACAAAGACTGAGAGTTATGCTCCCATGGGCTGGCCTGGATCCTTCTGTTGTTATGGCTCCACCTTACTCATATCCAATGCCTGTAGCTGTCCCTCCCGGCCCAATTCCCATGCACCCGTCACTTCAGCCGTATCCTTACTTTCATGCTCAAAATCCTGCTGCTATGCCTAATCCCTGTTCAACTTTTGTGCCATATCCAGTACCTGCCAATCCTCCAGTCGAACACCCATCACCGCAGTACGCATCTGTCTCCCACAGTTCAAGCAAGCAAGATTCCAGGAGTAGGTCATCAGATCATCAAAGGGGTAGCAATGCTGAAAGGTGTGATGACTCCAATGATGTAGCAACAGACCTTGAACTTAAGATGCCAGGATCTTCAGCACCACAGGATTCATCTTCTGGGGTTAAGAAGGCCAAGCAATCACGGAGGAAGGATAGGGGCATTACAGATGGAAGCTCATCAAGTAGGTCTTCTTCATCTCAAGTTGTTCAGGAAAGCTCCTCCAACAGTGTAGGTGACGTTCCCAAGCCTAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

324

Amino Acids

35.65

Weight (kDa)

6.72

Isoelectric Point (pI)

66.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_IRO3	PF23177	46 - 121	1e-19	Iron-related transcription factor 3 bHLH domain
HLH	PF00010	48 - 98	2e-09	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19860 AT3G19860 AT3G19860
fragaria_vesca	FvH4_1g11770 FvH4_2g02000 FvH4_2g02000 FvH4_2g02000
malus_domestica	MD02G1132000.v1.1 MD05G1115800.v1.1 MD15G1245200.v1.1
prunus_persica	Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.8G160700_v2.0.a1
pyrus_communis	pycom02g10290 pycom05g11010 pycom15g21570
rosa_chinensis	RchiOBHm_Chr2g0099391 RchiOBHm_Chr6g0245181
rosa_laevigata	RLG00000015318 RLG00000016878
rosa_multiflora	Rmu_co8372605.1_g000001 Rmu_sc0001288.1_g000004 Rmu_sc0002487.1_g000008 Rmu_sc0027529.1_g000004
rosa_roxburghii	Rroxscaffold_2G00143110 Rroxscaffold_3G00242190 Rroxscaffold_7G00215380
rosa_rugosa	Rorug02G0079200 Rorug02G0079300 Rorug02G0079400 Rorug05G0512600 Rorug05G0512700 Rorug05G0512800.1
rosa_samantha	Rh2AG129100 Rh2BG132100 Rh2CG132900 Rh2DG133100 Rh6AG027700 Rh6BG023800 Rh6CG022200 Rh6DG022300
rosa_wichuraiana	Rw2G009940 Rw6G002340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	643
AccB7I	CCANNNNNTGG	1 cut(s)	461
AccII	CGCG	1 cut(s)	165
AccIII	TCCGGA	1 cut(s)	226
AciI	CCGC	3 cut(s)	116, 163, 665
AclWI	GGATC	6 cut(s)	12, 189, 218, 464, 477, 811
AcuI	CTGAAG	3 cut(s)	21, 539, 792
AfaI	GTAC	2 cut(s)	633, 671
AfiI	CCNNNNNNNGG	3 cut(s)	169, 461, 714
AflII	CTTAAG	1 cut(s)	791
AgsI	TTSAA	7 cut(s)	190, 275, 283, 410, 612, 693, 788
AjnI	CCWGG	4 cut(s)	98, 465, 707, 799
AluBI	AGCT	7 cut(s)	32, 41, 352, 373, 518, 888, 930
AluI	AGCT	7 cut(s)	32, 41, 352, 373, 518, 888, 930
Alw26I	GTCTC	2 cut(s)	113, 685
AlwI	GGATC	6 cut(s)	12, 189, 218, 464, 477, 811
AlwNI	CAGNNNCTG	1 cut(s)	635
Aor13HI	TCCGGA	1 cut(s)	226
AoxI	GGCC	4 cut(s)	233, 463, 529, 843
ApeKI	GCWGC	3 cut(s)	32, 326, 590
AspS9I	GGNCC	3 cut(s)	127, 234, 530
AsuC2I	CCSGG	1 cut(s)	528
AsuHPI	GGTGA	4 cut(s)	47, 184, 654, 959
AvaII	GGWCC	1 cut(s)	127
BamHI	GGATCC	2 cut(s)	4, 469
BarI	GAAGNNNNNNTAC	2 cut(s)	889, 921
BbsI	GAAGAC	1 cut(s)	894
BbvI	GCAGC	3 cut(s)	19, 313, 577
BccI	CCATC	3 cut(s)	263, 667, 875
BceAI	ACGGC	1 cut(s)	544
BciT130I	CCWGG	4 cut(s)	100, 467, 709, 801
BciVI	GTATCC	1 cut(s)	573
BcnI	CCSGG	1 cut(s)	528
BcoDI	GTCTC	2 cut(s)	113, 685
BfaI	CTAG	1 cut(s)	141
BfmI	CTRYAG	1 cut(s)	513
BfrI	CTTAAG	1 cut(s)	791
BfuAI	ACCTGC	1 cut(s)	643
BfuI	GTATCC	1 cut(s)	573
BisI	GCNGC	3 cut(s)	33, 327, 591
BlsI	GCNGC	3 cut(s)	34, 328, 592
Bme1390I	CCNGG	5 cut(s)	100, 467, 528, 709, 801
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	3 cut(s)	127, 234, 530
BmiI	GGNNCC	4 cut(s)	6, 129, 471, 489
BmrFI	CCNGG	5 cut(s)	100, 467, 528, 709, 801
BmsI	GCATC	4 cut(s)	103, 398, 683, 786
BpiI	GAAGAC	1 cut(s)	894
BplI	GAGNNNNNCTC	2 cut(s)	435, 467
BpmI	CTGGAG	1 cut(s)	630
BpuEI	CTTGAG	1 cut(s)	897
BpuMI	CCSGG	1 cut(s)	528
Bsa29I	ATCGAT	1 cut(s)	184
BsaJI	CCNNGG	2 cut(s)	8, 455
BsaWI	WCCGGW	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	3 cut(s)	169, 461, 714
Bse1I	ACTGG	2 cut(s)	629, 647
Bse3DI	GCAATG	1 cut(s)	748
BseAI	TCCGGA	1 cut(s)	226
BseBI	CCWGG	4 cut(s)	100, 467, 709, 801
BseCI	ATCGAT	1 cut(s)	184
BseDI	CCNNGG	2 cut(s)	8, 455
BseGI	GGATG	1 cut(s)	255
BseLI	CCNNNNNNNGG	3 cut(s)	169, 461, 714
BseMI	GCAATG	1 cut(s)	748
BseMII	CTCAG	2 cut(s)	42, 431
BseNI	ACTGG	2 cut(s)	629, 647
BseRI	GAGGAG	3 cut(s)	33, 190, 922
BseXI	GCAGC	3 cut(s)	19, 313, 577
BsgI	GTGCAG	1 cut(s)	312
Bsh1236I	CGCG	1 cut(s)	165
BshFI	GGCC	4 cut(s)	235, 465, 531, 845
BshVI	ATCGAT	1 cut(s)	184
BsiSI	CCGG	2 cut(s)	227, 528
BslFI	GGGAC	2 cut(s)	60, 506
BslI	CCNNNNNNNGG	3 cut(s)	169, 461, 714
BsmAI	GTCTC	2 cut(s)	113, 685
BsmBI	CGTCTC	1 cut(s)	113
BsmFI	GGGAC	2 cut(s)	60, 506
BsnI	GGCC	4 cut(s)	235, 465, 531, 845
Bsp13I	TCCGGA	1 cut(s)	226
Bsp143I	GATC	6 cut(s)	4, 181, 223, 469, 724, 803
Bsp19I	CCATGG	1 cut(s)	455
BspACI	CCGC	3 cut(s)	116, 163, 665
BspANI	GGCC	4 cut(s)	235, 465, 531, 845
BspCNI	CTCAG	2 cut(s)	41, 432
BspDI	ATCGAT	1 cut(s)	184
BspEI	TCCGGA	1 cut(s)	226
BspFNI	CGCG	1 cut(s)	165
BspLI	GGNNCC	4 cut(s)	6, 129, 471, 489
BspMI	ACCTGC	1 cut(s)	643
BspPI	GGATC	6 cut(s)	12, 189, 218, 464, 477, 811
BspTI	CTTAAG	1 cut(s)	791
BsrDI	GCAATG	1 cut(s)	748
BsrI	ACTGG	2 cut(s)	629, 647
BssECI	CCNNGG	2 cut(s)	8, 455
BssMI	GATC	6 cut(s)	4, 181, 223, 469, 724, 803
BssT1I	CCWWGG	2 cut(s)	8, 455
Bst2UI	CCWGG	4 cut(s)	100, 467, 709, 801
Bst4CI	ACNGT	2 cut(s)	689, 941
Bst6I	CTCTTC	1 cut(s)	375
BstAFI	CTTAAG	1 cut(s)	791
BstC8I	GCNNGC	2 cut(s)	463, 698
BstDEI	CTNAG	3 cut(s)	28, 374, 440
BstDSI	CCRYGG	1 cut(s)	455
BstF5I	GGATG	1 cut(s)	255
BstFNI	CGCG	1 cut(s)	165
BstKTI	GATC	6 cut(s)	7, 184, 226, 472, 727, 806
BstMAI	GTCTC	2 cut(s)	113, 685
BstMBI	GATC	6 cut(s)	4, 181, 223, 469, 724, 803
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 323
BstNI	CCWGG	4 cut(s)	100, 467, 709, 801
BstSCI	CCNGG	5 cut(s)	98, 465, 526, 707, 799
BstSFI	CTRYAG	1 cut(s)	513
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	3 cut(s)	19, 313, 577
BstV2I	GAAGAC	1 cut(s)	894
BstX2I	RGATCY	4 cut(s)	4, 223, 469, 803
BstYI	RGATCY	4 cut(s)	4, 223, 469, 803
Bsu15I	ATCGAT	1 cut(s)	184
BsuI	GTATCC	1 cut(s)	573
BsuRI	GGCC	4 cut(s)	235, 465, 531, 845
BsuTUI	ATCGAT	1 cut(s)	184
BtgI	CCRYGG	1 cut(s)	455
BtsCI	GGATG	1 cut(s)	255
BtsIMutI	CAGTG	1 cut(s)	946
BveI	ACCTGC	1 cut(s)	643
Cac8I	GCNNGC	2 cut(s)	463, 698
CaiI	CAGNNNCTG	1 cut(s)	635
Cfr13I	GGNCC	3 cut(s)	127, 234, 530
ClaI	ATCGAT	1 cut(s)	184
CseI	GACGC	1 cut(s)	364
Csp6I	GTAC	2 cut(s)	632, 670
CviAII	CATG	3 cut(s)	456, 541, 575
CviQI	GTAC	2 cut(s)	632, 670
DdeI	CTNAG	3 cut(s)	28, 374, 440
DpnI	GATC	6 cut(s)	6, 183, 225, 471, 726, 805
DpnII	GATC	6 cut(s)	4, 181, 223, 469, 724, 803
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco130I	CCWWGG	2 cut(s)	8, 455
Eco47I	GGWCC	1 cut(s)	127
Eco57I	CTGAAG	3 cut(s)	21, 539, 792
EcoO109I	RGGNCCY	1 cut(s)	127
EcoRII	CCWGG	4 cut(s)	98, 465, 707, 799
EcoT14I	CCWWGG	2 cut(s)	8, 455
ErhI	CCWWGG	2 cut(s)	8, 455
Esp3I	CGTCTC	1 cut(s)	113
FaeI	CATG	3 cut(s)	459, 544, 578
FaiI	YATR	8 cut(s)	449, 457, 485, 502, 542, 576, 596, 625
FalI	AAGNNNNNCTT	2 cut(s)	886, 918
FaqI	GGGAC	2 cut(s)	60, 506
FatI	CATG	3 cut(s)	455, 540, 574
Fnu4HI	GCNGC	3 cut(s)	33, 327, 591
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	3 cut(s)	33, 327, 591
FspBI	CTAG	1 cut(s)	141
GluI	GCNGC	3 cut(s)	33, 327, 591
GsuI	CTGGAG	1 cut(s)	630
HaeIII	GGCC	4 cut(s)	235, 465, 531, 845
HapII	CCGG	2 cut(s)	227, 528
HgaI	GACGC	1 cut(s)	364
Hin1II	CATG	3 cut(s)	459, 544, 578
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	5 cut(s)	95, 341, 704, 761, 821
HpaII	CCGG	2 cut(s)	227, 528
HphI	GGTGA	4 cut(s)	47, 184, 654, 959
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	6 cut(s)	19, 94, 153, 298, 403, 724
Hpy188III	TCNNGA	2 cut(s)	227, 923
Hpy8I	GTNNAC	1 cut(s)	304
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	7 cut(s)	57, 118, 277, 379, 483, 835, 856
HpyCH4III	ACNGT	2 cut(s)	689, 941
HpyCH4IV	ACGT	1 cut(s)	951
HpyCH4V	TGCA	2 cut(s)	329, 544
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 323
HpyF3I	CTNAG	3 cut(s)	28, 374, 440
HpySE526I	ACGT	1 cut(s)	951
Hsp92II	CATG	3 cut(s)	459, 544, 578
Kpn2I	TCCGGA	1 cut(s)	226
Kzo9I	GATC	6 cut(s)	4, 181, 223, 469, 724, 803
LmnI	GCTCC	4 cut(s)	46, 456, 493, 935
Lsp1109I	GCAGC	3 cut(s)	19, 313, 577
LweI	GCATC	4 cut(s)	103, 398, 683, 786
MaeI	CTAG	1 cut(s)	141
MaeII	ACGT	1 cut(s)	951
MaeIII	GTNAC	2 cut(s)	549, 947
MalI	GATC	6 cut(s)	6, 183, 225, 471, 726, 805
MboI	GATC	6 cut(s)	4, 181, 223, 469, 724, 803
MboII	GAAGA	6 cut(s)	376, 392, 798, 819, 894, 897
MflI	RGATCY	4 cut(s)	4, 223, 469, 803
MluCI	AATT	2 cut(s)	270, 534
MlyI	GAGTC	1 cut(s)	755
MmeI	TCCRAC	3 cut(s)	42, 111, 960
MnlI	CCTC	9 cut(s)	54, 69, 76, 168, 171, 534, 654, 852, 943
MroI	TCCGGA	1 cut(s)	226
MseI	TTAA	3 cut(s)	290, 792, 837
MspA1I	CMGCKG	1 cut(s)	32
MspCI	CTTAAG	1 cut(s)	791
MspI	CCGG	2 cut(s)	227, 528
MspR9I	CCNGG	5 cut(s)	100, 467, 528, 709, 801
MvaI	CCWGG	4 cut(s)	100, 467, 709, 801
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	2 cut(s)	38, 323
NciI	CCSGG	1 cut(s)	528
NcoI	CCATGG	1 cut(s)	455
NdeII	GATC	6 cut(s)	4, 181, 223, 469, 724, 803
NlaIII	CATG	3 cut(s)	459, 544, 578
NlaIV	GGNNCC	4 cut(s)	6, 129, 471, 489
NmuCI	GTSAC	2 cut(s)	549, 947
PcsI	WCGNNNNNNNCGW	1 cut(s)	128
PfeI	GAWTC	4 cut(s)	95, 341, 704, 821
PflMI	CCANNNNNTGG	1 cut(s)	461
PfoI	TCCNGGA	1 cut(s)	707
PkrI	GCNGC	3 cut(s)	34, 328, 592
PleI	GAGTC	1 cut(s)	755
PpsI	GAGTC	1 cut(s)	755
PpuMI	RGGWCCY	1 cut(s)	127
Psp5II	RGGWCCY	1 cut(s)	127
Psp6I	CCWGG	4 cut(s)	98, 465, 707, 799
PspGI	CCWGG	4 cut(s)	98, 465, 707, 799
PspN4I	GGNNCC	4 cut(s)	6, 129, 471, 489
PspPI	GGNCC	3 cut(s)	127, 234, 530
PspPPI	RGGWCCY	1 cut(s)	127
PsrI	GAACNNNNNNTAC	2 cut(s)	936, 968
PstNI	CAGNNNCTG	1 cut(s)	635
PsuI	RGATCY	4 cut(s)	4, 223, 469, 803
PvuII	CAGCTG	1 cut(s)	32
RsaI	GTAC	2 cut(s)	633, 671
RsaNI	GTAC	2 cut(s)	632, 670
SaqAI	TTAA	3 cut(s)	290, 792, 837
SatI	GCNGC	3 cut(s)	33, 327, 591
Sau3AI	GATC	6 cut(s)	4, 181, 223, 469, 724, 803
Sau96I	GGNCC	3 cut(s)	127, 234, 530
SchI	GAGTC	1 cut(s)	755
ScrFI	CCNGG	5 cut(s)	100, 467, 528, 709, 801
SfaNI	GCATC	4 cut(s)	103, 398, 683, 786
SfcI	CTRYAG	1 cut(s)	513
SinI	GGWCC	1 cut(s)	127
SmlI	CTYRAG	2 cut(s)	791, 912
SmoI	CTYRAG	2 cut(s)	791, 912
Sse9I	AATT	2 cut(s)	270, 534
SsiI	CCGC	3 cut(s)	116, 163, 665
SspMI	CTAG	1 cut(s)	141
StyD4I	CCNGG	5 cut(s)	98, 465, 526, 707, 799
StyI	CCWWGG	2 cut(s)	8, 455
TaaI	ACNGT	2 cut(s)	689, 941
TaiI	ACGT	1 cut(s)	954
TaqI	TCGA	2 cut(s)	184, 651
TasI	AATT	2 cut(s)	270, 534
TfiI	GAWTC	4 cut(s)	95, 341, 704, 821
Tru1I	TTAA	3 cut(s)	290, 792, 837
Tru9I	TTAA	3 cut(s)	290, 792, 837
TscAI	CASTG	1 cut(s)	946
TseFI	GTSAC	2 cut(s)	549, 947
TseI	GCWGC	3 cut(s)	32, 326, 590
Tsp45I	GTSAC	2 cut(s)	549, 947
TspDTI	ATGAA	4 cut(s)	354, 563, 813, 897
TspGWI	ACGGA	1 cut(s)	871
TspRI	CASTG	1 cut(s)	946
Van91I	CCANNNNNTGG	1 cut(s)	461
Vha464I	CTTAAG	1 cut(s)	791
VpaK11BI	GGWCC	1 cut(s)	127
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.