Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001822

Physical Location & Seq

Genomic Coordinates Reverse (-)

16915641 .. 16919129

Gene Structure 3489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G160700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGATCAGCAGTTCAAACACGAAGGCTTCATCCAATCTGCGCCACCTCCATTTCCTTCCGCCATAGAATTTCCTCAGCCCCCTCCTGATTCCCGCGCTCCCTCCGGCCGCTCCCAACCCAATTCAAGCCAAAGGCCTGAAGGGGAAACTAAGGATTGTCTAACGGCTAGAAAGATTCAGAAGGCTGACCGGGAGAAGTTGAGGAGGGATCGACTGAACGAGCAGTTTCTTGAGTTGGGGAATGTTTTAGATCCAGACAGACCCAAAAATGATAAAGCAACCATTTTAGCTGATACAATTCAAGTGCTGAAGGATTTGACATCGGAAGTAGACAAACTTAAAGCTGATTGTGCTTCACTAACCGAAGAGTCTCGTGAGTTGACACATGAGAAAAATGATCTCAGAGAAGAGAAGGCATCTCTTAAATCTGACATTGAGAACCTTAATGCTCAGTATCAGCAGAGACTCAGGGCTATGTTCCCTTGGGGTGCTATGGATCACTCAGTTGTAATGGCCCCACCTTCATATCCATATCCAATGCCAATGCCAATGCCTCCAGGTCCAATTCCCATGCATCCACATATGCAGCCATACCATTATTTCCCAAATCAGAATCCTGGGGTCATTCCTAACCCCTGTTCAACTTTTGTTCCATATGTTACTCCTAATACTCTGGTTGAACAGCAGTCCACCCAATATGTGTCGCCAGTAGTGCATCCAGGAAGTCGGTCTCATGTTTCAGGCAAACAAGATTCCAGAAACAAATTATCCGGGGAGAGTAAAATTGACAGAAGTGAGGATTCAAATGATGTTACGACAGAACTAGAATTGAAAACTCCTGGATCTATGACTGATCAGGATTTATCATCAGTACGAAGAAAATCTCAGAAGTCAGCGAGGAAGGAAATCAAGGTTACAGAAGGGAGTTCTTCAAGCAGATGTTCTTCTTCTCGTAGTGTACAGGATAGCTCATCTAATAGCGTAGTTGGTGGCACAAAAGCTGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

337

Amino Acids

37.44

Weight (kDa)

6.28

Isoelectric Point (pI)

64.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19860 AT3G19860 AT3G19860
fragaria_vesca	FvH4_1g11770 FvH4_2g02000 FvH4_2g02000 FvH4_2g02000
malus_domestica	MD02G1132000.v1.1 MD05G1115800.v1.1 MD15G1245200.v1.1
prunus_persica	Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.8G160700_v2.0.a1
pyrus_communis	pycom02g10290 pycom05g11010 pycom15g21570
rosa_chinensis	RchiOBHm_Chr2g0099391 RchiOBHm_Chr6g0245181
rosa_laevigata	RLG00000015318 RLG00000016878
rosa_multiflora	Rmu_co8372605.1_g000001 Rmu_sc0001288.1_g000004 Rmu_sc0002487.1_g000008 Rmu_sc0027529.1_g000004
rosa_roxburghii	Rroxscaffold_2G00143110 Rroxscaffold_3G00242190 Rroxscaffold_7G00215380
rosa_rugosa	Rorug02G0079200 Rorug02G0079300 Rorug02G0079400 Rorug05G0512600 Rorug05G0512700 Rorug05G0512800.1
rosa_samantha	Rh2AG129100 Rh2BG132100 Rh2CG132900 Rh2DG133100 Rh6AG027700 Rh6BG023800 Rh6CG022200 Rh6DG022300
rosa_wichuraiana	Rw2G009940 Rw6G002340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	111
AccI	GTMKAC	1 cut(s)	330
AccII	CGCG	1 cut(s)	96
AciI	CCGC	3 cut(s)	60, 94, 109
AclWI	GGATC	5 cut(s)	12, 216, 245, 504, 850
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	68
AcuI	CTGAAG	2 cut(s)	159, 329
AfaI	GTAC	2 cut(s)	873, 960
AgsI	TTSAA	8 cut(s)	16, 126, 302, 642, 680, 804, 832, 933
AjnI	CCWGG	4 cut(s)	556, 616, 718, 838
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	4 cut(s)	290, 344, 969, 1001
AluI	AGCT	4 cut(s)	290, 344, 969, 1001
Alw26I	GTCTC	3 cut(s)	375, 457, 735
AlwI	GGATC	5 cut(s)	12, 216, 245, 504, 850
AoxI	GGCC	3 cut(s)	106, 134, 513
ApeKI	GCWGC	1 cut(s)	586
ApoI	RAATTY	1 cut(s)	68
AspLEI	GCGC	2 cut(s)	43, 98
AspS9I	GGNCC	2 cut(s)	514, 560
AsuC2I	CCSGG	2 cut(s)	191, 772
AvaII	GGWCC	1 cut(s)	560
BauI	CACGAG	1 cut(s)	372
BbvCI	CCTCAGC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	598
BceAI	ACGGC	1 cut(s)	180
BciT130I	CCWGG	4 cut(s)	558, 618, 720, 840
BclI	TGATCA	1 cut(s)	853
BcnI	CCSGG	2 cut(s)	191, 772
BcoDI	GTCTC	3 cut(s)	375, 457, 735
BfaI	CTAG	2 cut(s)	168, 824
BisI	GCNGC	2 cut(s)	109, 587
BlsI	GCNGC	2 cut(s)	110, 588
Bme1390I	CCNGG	6 cut(s)	191, 558, 618, 720, 772, 840
Bme18I	GGWCC	1 cut(s)	560
BmgT120I	GGNCC	2 cut(s)	514, 560
BmiI	GGNNCC	1 cut(s)	516
BmrFI	CCNGG	6 cut(s)	191, 558, 618, 720, 772, 840
BmsI	GCATC	3 cut(s)	425, 583, 724
BpmI	CTGGAG	1 cut(s)	540
Bpu10I	CCTNAGC	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	251
BpuMI	CCSGG	2 cut(s)	191, 772
BsaI	GGTCTC	1 cut(s)	735
BsaJI	CCNNGG	3 cut(s)	482, 617, 771
Bse1I	ACTGG	1 cut(s)	707
BseBI	CCWGG	4 cut(s)	558, 618, 720, 840
BseDI	CCNNGG	3 cut(s)	482, 617, 771
BseGI	GGATG	3 cut(s)	30, 574, 715
BseMII	CTCAG	6 cut(s)	89, 415, 464, 481, 516, 899
BseNI	ACTGG	1 cut(s)	707
BseRI	GAGGAG	1 cut(s)	217
BseX3I	CGGCCG	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	598
Bsh1236I	CGCG	1 cut(s)	96
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	3 cut(s)	108, 136, 515
BsiEI	CGRYCG	1 cut(s)	109
BsiSI	CCGG	3 cut(s)	105, 190, 771
BsmAI	GTCTC	3 cut(s)	375, 457, 735
BsnI	GGCC	3 cut(s)	108, 136, 515
Bso31I	GGTCTC	1 cut(s)	735
Bsp1407I	TGTACA	1 cut(s)	958
Bsp143I	GATC	7 cut(s)	4, 208, 250, 397, 496, 842, 853
BspACI	CCGC	3 cut(s)	60, 94, 109
BspANI	GGCC	3 cut(s)	108, 136, 515
BspCNI	CTCAG	6 cut(s)	88, 414, 463, 480, 515, 898
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	1 cut(s)	516
BspPI	GGATC	5 cut(s)	12, 216, 245, 504, 850
BspTNI	GGTCTC	1 cut(s)	735
BsrBI	CCGCTC	1 cut(s)	111
BsrGI	TGTACA	1 cut(s)	958
BsrI	ACTGG	1 cut(s)	707
BssECI	CCNNGG	3 cut(s)	482, 617, 771
BssMI	GATC	7 cut(s)	4, 208, 250, 397, 496, 842, 853
BssSI	CACGAG	1 cut(s)	372
BssT1I	CCWWGG	1 cut(s)	482
Bst2BI	CACGAG	1 cut(s)	372
Bst2UI	CCWGG	4 cut(s)	558, 618, 720, 840
Bst6I	CTCTTC	2 cut(s)	360, 402
BstAUI	TGTACA	1 cut(s)	958
BstDEI	CTNAG	7 cut(s)	75, 150, 401, 450, 467, 502, 885
BstF5I	GGATG	3 cut(s)	30, 574, 715
BstFNI	CGCG	1 cut(s)	96
BstHHI	GCGC	2 cut(s)	43, 98
BstKTI	GATC	7 cut(s)	7, 211, 253, 400, 499, 845, 856
BstMAI	GTCTC	3 cut(s)	375, 457, 735
BstMBI	GATC	7 cut(s)	4, 208, 250, 397, 496, 842, 853
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 712
BstNI	CCWGG	4 cut(s)	558, 618, 720, 840
BstSCI	CCNGG	6 cut(s)	189, 556, 616, 718, 770, 838
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	598
BstX2I	RGATCY	2 cut(s)	250, 842
BstYI	RGATCY	2 cut(s)	250, 842
BstZI	CGGCCG	1 cut(s)	106
BsuRI	GGCC	3 cut(s)	108, 136, 515
BtsCI	GGATG	3 cut(s)	30, 574, 715
CfoI	GCGC	2 cut(s)	43, 98
Cfr13I	GGNCC	2 cut(s)	514, 560
Csp6I	GTAC	2 cut(s)	872, 959
CviAII	CATG	3 cut(s)	386, 571, 734
CviQI	GTAC	2 cut(s)	872, 959
DdeI	CTNAG	7 cut(s)	75, 150, 401, 450, 467, 502, 885
DpnI	GATC	7 cut(s)	6, 210, 252, 399, 498, 844, 855
DpnII	GATC	7 cut(s)	4, 208, 250, 397, 496, 842, 853
EaeI	YGGCCR	1 cut(s)	106
EagI	CGGCCG	1 cut(s)	106
Eam1104I	CTCTTC	2 cut(s)	360, 402
EarI	CTCTTC	2 cut(s)	360, 402
EciI	GGCGGA	1 cut(s)	49
EclXI	CGGCCG	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	482
Eco147I	AGGCCT	1 cut(s)	136
Eco31I	GGTCTC	1 cut(s)	735
Eco47I	GGWCC	1 cut(s)	560
Eco52I	CGGCCG	1 cut(s)	106
Eco57I	CTGAAG	2 cut(s)	159, 329
EcoRII	CCWGG	4 cut(s)	556, 616, 718, 838
EcoT14I	CCWWGG	1 cut(s)	482
EcoT22I	ATGCAT	1 cut(s)	576
ErhI	CCWWGG	1 cut(s)	482
FaeI	CATG	3 cut(s)	389, 574, 737
FatI	CATG	3 cut(s)	385, 570, 733
FauI	CCCGC	1 cut(s)	101
FauNDI	CATATG	2 cut(s)	582, 655
FbaI	TGATCA	1 cut(s)	853
FblI	GTMKAC	1 cut(s)	330
Fnu4HI	GCNGC	2 cut(s)	109, 587
FokI	GGATG	3 cut(s)	17, 561, 702
Fsp4HI	GCNGC	2 cut(s)	109, 587
FspBI	CTAG	2 cut(s)	168, 824
GlaI	GCGC	2 cut(s)	42, 97
GluI	GCNGC	2 cut(s)	109, 587
GsuI	CTGGAG	1 cut(s)	540
HaeIII	GGCC	3 cut(s)	108, 136, 515
HapII	CCGG	3 cut(s)	105, 190, 771
HhaI	GCGC	2 cut(s)	43, 98
Hin1II	CATG	3 cut(s)	389, 574, 737
Hin6I	GCGC	2 cut(s)	41, 96
HinP1I	GCGC	2 cut(s)	41, 96
HincII	GTYRAC	1 cut(s)	381
HindII	GTYRAC	1 cut(s)	381
HinfI	GANTC	7 cut(s)	89, 175, 368, 465, 613, 752, 800
HpaII	CCGG	3 cut(s)	105, 190, 771
Hpy166II	GTNNAC	4 cut(s)	331, 381, 690, 959
Hpy188I	TCNGA	6 cut(s)	180, 325, 404, 430, 612, 888
Hpy188III	TCNNGA	6 cut(s)	86, 230, 254, 374, 756, 857
Hpy8I	GTNNAC	4 cut(s)	331, 381, 690, 959
HpyAV	CCTTC	9 cut(s)	17, 66, 134, 175, 304, 406, 531, 895, 914
HpyCH4V	TGCA	3 cut(s)	574, 586, 715
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 712
HpyF3I	CTNAG	7 cut(s)	75, 150, 401, 450, 467, 502, 885
Hsp92II	CATG	3 cut(s)	389, 574, 737
HspAI	GCGC	2 cut(s)	41, 96
Ksp22I	TGATCA	1 cut(s)	853
Kzo9I	GATC	7 cut(s)	4, 208, 250, 397, 496, 842, 853
LmnI	GCTCC	2 cut(s)	103, 116
Lsp1109I	GCAGC	1 cut(s)	598
LweI	GCATC	3 cut(s)	425, 583, 724
MaeI	CTAG	2 cut(s)	168, 824
MaeIII	GTNAC	3 cut(s)	658, 811, 913
MalI	GATC	7 cut(s)	6, 210, 252, 399, 498, 844, 855
MbiI	CCGCTC	1 cut(s)	111
MboI	GATC	7 cut(s)	4, 208, 250, 397, 496, 842, 853
MboII	GAAGA	6 cut(s)	377, 419, 888, 921, 936, 939
MflI	RGATCY	2 cut(s)	250, 842
MluCI	AATT	7 cut(s)	68, 121, 297, 564, 764, 783, 827
MlyI	GAGTC	2 cut(s)	377, 459
MnlI	CCTC	9 cut(s)	57, 84, 93, 112, 195, 198, 564, 790, 891
Mph1103I	ATGCAT	1 cut(s)	576
MseI	TTAA	3 cut(s)	339, 423, 444
MspI	CCGG	3 cut(s)	105, 190, 771
MspR9I	CCNGG	6 cut(s)	191, 558, 618, 720, 772, 840
MvaI	CCWGG	4 cut(s)	558, 618, 720, 840
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	2 cut(s)	350, 712
NciI	CCSGG	2 cut(s)	191, 772
NdeI	CATATG	2 cut(s)	582, 655
NdeII	GATC	7 cut(s)	4, 208, 250, 397, 496, 842, 853
NlaIII	CATG	3 cut(s)	389, 574, 737
NlaIV	GGNNCC	1 cut(s)	516
NsiI	ATGCAT	1 cut(s)	576
PceI	AGGCCT	1 cut(s)	136
PfeI	GAWTC	5 cut(s)	89, 175, 613, 752, 800
PfoI	TCCNGGA	2 cut(s)	718, 838
PkrI	GCNGC	2 cut(s)	110, 588
PleI	GAGTC	2 cut(s)	376, 459
PpsI	GAGTC	2 cut(s)	376, 459
Psp6I	CCWGG	4 cut(s)	556, 616, 718, 838
PspGI	CCWGG	4 cut(s)	556, 616, 718, 838
PspN4I	GGNNCC	1 cut(s)	516
PspPI	GGNCC	2 cut(s)	514, 560
PsuI	RGATCY	2 cut(s)	250, 842
RsaI	GTAC	2 cut(s)	873, 960
RsaNI	GTAC	2 cut(s)	872, 959
SaqAI	TTAA	3 cut(s)	339, 423, 444
SatI	GCNGC	2 cut(s)	109, 587
Sau3AI	GATC	7 cut(s)	4, 208, 250, 397, 496, 842, 853
Sau96I	GGNCC	2 cut(s)	514, 560
SchI	GAGTC	2 cut(s)	377, 459
ScrFI	CCNGG	6 cut(s)	191, 558, 618, 720, 772, 840
SetI	ASST	9 cut(s)	49, 292, 346, 444, 523, 562, 915, 971, 1003
SfaNI	GCATC	3 cut(s)	425, 583, 724
SinI	GGWCC	1 cut(s)	560
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	7 cut(s)	68, 121, 297, 564, 764, 783, 827
SseBI	AGGCCT	1 cut(s)	136
SsiI	CCGC	3 cut(s)	60, 94, 109
SspMI	CTAG	2 cut(s)	168, 824
StuI	AGGCCT	1 cut(s)	136
StyD4I	CCNGG	6 cut(s)	189, 556, 616, 718, 770, 838
StyI	CCWWGG	1 cut(s)	482
TaqI	TCGA	1 cut(s)	211
TaqII	GACCGA	1 cut(s)	717
TasI	AATT	7 cut(s)	68, 121, 297, 564, 764, 783, 827
TatI	WGTACW	1 cut(s)	958
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	5 cut(s)	89, 175, 613, 752, 800
Tru1I	TTAA	3 cut(s)	339, 423, 444
Tru9I	TTAA	3 cut(s)	339, 423, 444
TseI	GCWGC	1 cut(s)	586
TspDTI	ATGAA	2 cut(s)	19, 513
VpaK11BI	GGWCC	1 cut(s)	560
XapI	RAATTY	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	330
XspI	CTAG	2 cut(s)	168, 824
Zsp2I	ATGCAT	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.