Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001822

Physical Location & Seq

Genomic Coordinates Forward (+)

10897335 .. 10898910

Gene Structure 1576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016878

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGATCAGTGGAAAGGTGATGACTTTGCAGGTGTTTCAGCTCCTTCTTCGTCTCAGCCTCTTGCTTGTGATTCCAGGAAAAGGGCAGATTTAGAAACCAAGAACCCTGTTTCTGCGAGAAAAGTACAGAAAGCTGATCGTGAAAAATTGAGGAGGGATCGGTTGAACGAGCATTTTCTTGATTTGGGAAACACATTAGACCCAGATAGGCCGAGGAACGACAAGGCCACCATCCTTGCAGACACAATTCAAATGTTGAAGGATTTAACGTCGGATGTGAACAAACTGAAGGCTGAGTGTGCAGCACTCAATGATGAATCCCGTGAGCTGACAGTGGAGAAGAATGAGCTAAGAGAAGAGAAGGCATCTTTAAAATCTGATATTGAGAATCTCAATGCTCAATATCAGCAAAGAGTGAGGGTTATGTTTCCATGGGGGGCTATGGATCCTTCTGTTGTTATGGCTCAACCTTATTCATATCCAATGCCTGTAGCTGTTCCGCCCGGTCCAATTCCTATGCACCCATCGCTTCAGCCCTTTCCTTACTATCAAACTCAAAATCCAGCCACTGTTCCCAATTCTTGTCCAACTTTTGTCTCATATCCAACTCCTATCAATCGACCAGTAGAACAGCCGTTACCCCAACCCCAATATGCATCCGTTTCACATGTTTCAAGTAAGCAAGATTCCAAAAGCAAGTCATCAGATCATCAAAGGGGAAGCAATGCTGAAAGATGTGATGGCTCCAATGATGTGGCAACAGAGCTTGTACTTAAGATGCCTGGATCTTCAGCATATCAGGAGTCATCTTGTGGGGCTAGGAAGGGGAAGCAATCACGAACGAAAGATAGGAACATTACAGATGGAAGCTCTTCGAGTAGGTATTCTTCATCTCAAGTTGTTCAGGAGAGTTCGTCTAACAGTGTAGGTGATATCCCCAAGACTAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

318

Amino Acids

35.07

Weight (kDa)

8.17

Isoelectric Point (pI)

61.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_IRO3	PF23177	39 - 114	9.5e-19	Iron-related transcription factor 3 bHLH domain
HLH	PF00010	40 - 90	3.8e-08	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19860 AT3G19860 AT3G19860
fragaria_vesca	FvH4_1g11770 FvH4_2g02000 FvH4_2g02000 FvH4_2g02000
malus_domestica	MD02G1132000.v1.1 MD05G1115800.v1.1 MD15G1245200.v1.1
prunus_persica	Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.8G160700_v2.0.a1
pyrus_communis	pycom02g10290 pycom05g11010 pycom15g21570
rosa_chinensis	RchiOBHm_Chr2g0099391 RchiOBHm_Chr6g0245181
rosa_laevigata	RLG00000015318 RLG00000016878
rosa_multiflora	Rmu_co8372605.1_g000001 Rmu_sc0001288.1_g000004 Rmu_sc0002487.1_g000008 Rmu_sc0027529.1_g000004
rosa_roxburghii	Rroxscaffold_2G00143110 Rroxscaffold_3G00242190 Rroxscaffold_7G00215380
rosa_rugosa	Rorug02G0079200 Rorug02G0079300 Rorug02G0079400 Rorug05G0512600 Rorug05G0512700 Rorug05G0512800.1
rosa_samantha	Rh2AG129100 Rh2BG132100 Rh2CG132900 Rh2DG133100 Rh6AG027700 Rh6BG023800 Rh6CG022200 Rh6DG022300
rosa_wichuraiana	Rw2G009940 Rw6G002340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	20
Acc36I	ACCTGC	1 cut(s)	20
AciI	CCGC	1 cut(s)	500
AclWI	GGATC	5 cut(s)	12, 165, 440, 453, 793
AcuI	CTGAAG	3 cut(s)	308, 515, 774
AfaI	GTAC	2 cut(s)	126, 771
AfiI	CCNNNNNNNGG	1 cut(s)	81
AflII	CTTAAG	1 cut(s)	773
AflIII	ACRYGT	1 cut(s)	667
AgsI	TTSAA	4 cut(s)	166, 251, 259, 675
AjnI	CCWGG	2 cut(s)	74, 781
AluBI	AGCT	7 cut(s)	41, 134, 328, 349, 494, 766, 870
AluI	AGCT	7 cut(s)	41, 134, 328, 349, 494, 766, 870
Alw26I	GTCTC	2 cut(s)	57, 601
AlwI	GGATC	5 cut(s)	12, 165, 440, 453, 793
AlwNI	CAGNNNCTG	1 cut(s)	569
AoxI	GGCC	2 cut(s)	209, 225
ApeKI	GCWGC	1 cut(s)	302
Asp700I	GAANNNNTTC	1 cut(s)	871
AspS9I	GGNCC	1 cut(s)	506
AsuC2I	CCSGG	1 cut(s)	504
AsuHPI	GGTGA	2 cut(s)	29, 941
AvaII	GGWCC	1 cut(s)	506
BamHI	GGATCC	1 cut(s)	445
BarI	GAAGNNNNNNTAC	2 cut(s)	871, 903
BbvI	GCAGC	1 cut(s)	314
BccI	CCATC	4 cut(s)	239, 532, 734, 857
BceAI	ACGGC	1 cut(s)	619
BciT130I	CCWGG	2 cut(s)	76, 783
BcnI	CCSGG	1 cut(s)	504
BcoDI	GTCTC	2 cut(s)	57, 601
BfaI	CTAG	1 cut(s)	819
BfmI	CTRYAG	1 cut(s)	489
BfrI	CTTAAG	1 cut(s)	773
BfuAI	ACCTGC	1 cut(s)	20
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
Bme1390I	CCNGG	3 cut(s)	76, 504, 783
Bme18I	GGWCC	1 cut(s)	506
BmgT120I	GGNCC	1 cut(s)	506
BmiI	GGNNCC	2 cut(s)	447, 745
BmrFI	CCNGG	3 cut(s)	76, 504, 783
BmsI	GCATC	3 cut(s)	374, 665, 768
BpuEI	CTTGAG	1 cut(s)	879
BpuMI	CCSGG	1 cut(s)	504
BsaJI	CCNNGG	2 cut(s)	212, 431
BsaXI	ACNNNNNCTCC	2 cut(s)	899, 929
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse1I	ACTGG	1 cut(s)	623
Bse3DI	GCAATG	1 cut(s)	730
BseBI	CCWGG	2 cut(s)	76, 783
BseDI	CCNNGG	2 cut(s)	212, 431
BseGI	GGATG	3 cut(s)	231, 280, 656
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMI	GCAATG	1 cut(s)	730
BseMII	CTCAG	2 cut(s)	68, 285
BseNI	ACTGG	1 cut(s)	623
BseRI	GAGGAG	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	314
BsgI	GTGCAG	1 cut(s)	321
BshFI	GGCC	2 cut(s)	211, 227
BsiSI	CCGG	1 cut(s)	504
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmAI	GTCTC	2 cut(s)	57, 601
BsmBI	CGTCTC	1 cut(s)	57
BsnI	GGCC	2 cut(s)	211, 227
Bsp143I	GATC	6 cut(s)	4, 136, 157, 445, 706, 785
Bsp19I	CCATGG	1 cut(s)	431
BspACI	CCGC	1 cut(s)	500
BspANI	GGCC	2 cut(s)	211, 227
BspCNI	CTCAG	2 cut(s)	67, 286
BspLI	GGNNCC	2 cut(s)	447, 745
BspMI	ACCTGC	1 cut(s)	20
BspPI	GGATC	5 cut(s)	12, 165, 440, 453, 793
BspQI	GCTCTTC	1 cut(s)	877
BspTI	CTTAAG	1 cut(s)	773
BsrDI	GCAATG	1 cut(s)	730
BsrI	ACTGG	1 cut(s)	623
BssECI	CCNNGG	2 cut(s)	212, 431
BssMI	GATC	6 cut(s)	4, 136, 157, 445, 706, 785
BssT1I	CCWWGG	1 cut(s)	431
Bst2UI	CCWGG	2 cut(s)	76, 783
Bst4CI	ACNGT	3 cut(s)	334, 571, 923
Bst6I	CTCTTC	2 cut(s)	351, 877
BstAFI	CTTAAG	1 cut(s)	773
BstDEI	CTNAG	3 cut(s)	54, 294, 350
BstDSI	CCRYGG	1 cut(s)	431
BstF5I	GGATG	3 cut(s)	231, 280, 656
BstKTI	GATC	6 cut(s)	7, 139, 160, 448, 709, 788
BstMAI	GTCTC	2 cut(s)	57, 601
BstMBI	GATC	6 cut(s)	4, 136, 157, 445, 706, 785
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 526
BstNI	CCWGG	2 cut(s)	76, 783
BstNSI	RCATGY	1 cut(s)	671
BstSCI	CCNGG	3 cut(s)	74, 502, 781
BstSFI	CTRYAG	1 cut(s)	489
BstV1I	GCAGC	1 cut(s)	314
BstX2I	RGATCY	2 cut(s)	445, 785
BstXI	CCANNNNNNTGG	1 cut(s)	754
BstYI	RGATCY	2 cut(s)	445, 785
BsuRI	GGCC	2 cut(s)	211, 227
BtgI	CCRYGG	1 cut(s)	431
BtgZI	GCGATG	1 cut(s)	510
BtsCI	GGATG	3 cut(s)	231, 280, 656
BtsIMutI	CAGTG	4 cut(s)	14, 339, 567, 928
BveI	ACCTGC	1 cut(s)	20
CaiI	CAGNNNCTG	1 cut(s)	569
Cfr13I	GGNCC	1 cut(s)	506
Csp6I	GTAC	2 cut(s)	125, 770
CspCI	CAANNNNNGTGG	2 cut(s)	217, 252
CviAII	CATG	2 cut(s)	432, 668
CviQI	GTAC	2 cut(s)	125, 770
DdeI	CTNAG	3 cut(s)	54, 294, 350
DpnI	GATC	6 cut(s)	6, 138, 159, 447, 708, 787
DpnII	GATC	6 cut(s)	4, 136, 157, 445, 706, 785
DraI	TTTAAA	1 cut(s)	372
Eam1104I	CTCTTC	2 cut(s)	351, 877
EarI	CTCTTC	2 cut(s)	351, 877
EciI	GGCGGA	1 cut(s)	489
Eco130I	CCWWGG	1 cut(s)	431
Eco32I	GATATC	1 cut(s)	934
Eco47I	GGWCC	1 cut(s)	506
Eco57I	CTGAAG	3 cut(s)	308, 515, 774
EcoRII	CCWGG	2 cut(s)	74, 781
EcoRV	GATATC	1 cut(s)	934
EcoT14I	CCWWGG	1 cut(s)	431
EcoT22I	ATGCAT	1 cut(s)	658
ErhI	CCWWGG	1 cut(s)	431
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	2 cut(s)	435, 671
FatI	CATG	2 cut(s)	431, 667
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	3 cut(s)	218, 287, 643
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	1 cut(s)	819
GluI	GCNGC	1 cut(s)	303
HaeIII	GGCC	2 cut(s)	211, 227
HapII	CCGG	1 cut(s)	504
Hin1II	CATG	2 cut(s)	435, 671
HinfI	GANTC	5 cut(s)	71, 317, 388, 686, 803
HpaII	CCGG	1 cut(s)	504
HphI	GGTGA	2 cut(s)	29, 941
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	3 cut(s)	274, 379, 706
Hpy188III	TCNNGA	5 cut(s)	140, 179, 800, 837, 905
Hpy8I	GTNNAC	1 cut(s)	280
Hpy99I	CGWCG	1 cut(s)	274
HpyAV	CCTTC	6 cut(s)	54, 253, 283, 355, 459, 817
HpyCH4III	ACNGT	3 cut(s)	334, 571, 923
HpyCH4IV	ACGT	1 cut(s)	269
HpyCH4V	TGCA	5 cut(s)	29, 239, 302, 520, 656
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 526
HpyF3I	CTNAG	3 cut(s)	54, 294, 350
HpySE526I	ACGT	1 cut(s)	269
Hsp92II	CATG	2 cut(s)	435, 671
Kzo9I	GATC	6 cut(s)	4, 136, 157, 445, 706, 785
LguI	GCTCTTC	1 cut(s)	877
LmnI	GCTCC	2 cut(s)	46, 749
Lsp1109I	GCAGC	1 cut(s)	314
LweI	GCATC	3 cut(s)	374, 665, 768
MaeI	CTAG	1 cut(s)	819
MaeII	ACGT	1 cut(s)	269
MaeIII	GTNAC	1 cut(s)	636
MalI	GATC	6 cut(s)	6, 138, 159, 447, 708, 787
MboI	GATC	6 cut(s)	4, 136, 157, 445, 706, 785
MboII	GAAGA	6 cut(s)	39, 352, 368, 780, 864, 879
MflI	RGATCY	2 cut(s)	445, 785
MluCI	AATT	4 cut(s)	146, 246, 510, 577
MlyI	GAGTC	1 cut(s)	812
MmeI	TCCRAC	3 cut(s)	252, 611, 629
MnlI	CCTC	5 cut(s)	69, 144, 147, 207, 411
Mph1103I	ATGCAT	1 cut(s)	658
MroXI	GAANNNNTTC	1 cut(s)	871
MseI	TTAA	3 cut(s)	266, 371, 774
MspCI	CTTAAG	1 cut(s)	773
MspI	CCGG	1 cut(s)	504
MspR9I	CCNGG	3 cut(s)	76, 504, 783
MvaI	CCWGG	2 cut(s)	76, 783
MwoI	GCNNNNNNNGC	2 cut(s)	299, 526
NciI	CCSGG	1 cut(s)	504
NcoI	CCATGG	1 cut(s)	431
NdeII	GATC	6 cut(s)	4, 136, 157, 445, 706, 785
NlaIII	CATG	2 cut(s)	435, 671
NlaIV	GGNNCC	2 cut(s)	447, 745
NmeAIII	GCCGAG	1 cut(s)	237
NsiI	ATGCAT	1 cut(s)	658
NspI	RCATGY	1 cut(s)	671
PaqCI	CACCTGC	1 cut(s)	20
PciI	ACATGT	1 cut(s)	667
PciSI	GCTCTTC	1 cut(s)	877
PdmI	GAANNNNTTC	1 cut(s)	871
PfeI	GAWTC	4 cut(s)	71, 317, 388, 686
PfoI	TCCNGGA	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	304
PleI	GAGTC	1 cut(s)	811
PpsI	GAGTC	1 cut(s)	811
PscI	ACATGT	1 cut(s)	667
Psp6I	CCWGG	2 cut(s)	74, 781
PspGI	CCWGG	2 cut(s)	74, 781
PspN4I	GGNNCC	2 cut(s)	447, 745
PspPI	GGNCC	1 cut(s)	506
PsrI	GAACNNNNNNTAC	2 cut(s)	621, 653
PstNI	CAGNNNCTG	1 cut(s)	569
PsuI	RGATCY	2 cut(s)	445, 785
RsaI	GTAC	2 cut(s)	126, 771
RsaNI	GTAC	2 cut(s)	125, 770
SapI	GCTCTTC	1 cut(s)	877
SaqAI	TTAA	3 cut(s)	266, 371, 774
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	6 cut(s)	4, 136, 157, 445, 706, 785
Sau96I	GGNCC	1 cut(s)	506
SchI	GAGTC	1 cut(s)	812
ScrFI	CCNGG	3 cut(s)	76, 504, 783
SfaNI	GCATC	3 cut(s)	374, 665, 768
SfcI	CTRYAG	1 cut(s)	489
SinI	GGWCC	1 cut(s)	506
SmlI	CTYRAG	2 cut(s)	773, 894
SmoI	CTYRAG	2 cut(s)	773, 894
Sse9I	AATT	4 cut(s)	146, 246, 510, 577
SsiI	CCGC	1 cut(s)	500
SspMI	CTAG	1 cut(s)	819
StyD4I	CCNGG	3 cut(s)	74, 502, 781
StyI	CCWWGG	1 cut(s)	431
TaaI	ACNGT	3 cut(s)	334, 571, 923
TaiI	ACGT	1 cut(s)	272
TaqI	TCGA	2 cut(s)	619, 875
TasI	AATT	4 cut(s)	146, 246, 510, 577
TatI	WGTACW	2 cut(s)	124, 769
TfiI	GAWTC	4 cut(s)	71, 317, 388, 686
Tru1I	TTAA	3 cut(s)	266, 371, 774
Tru9I	TTAA	3 cut(s)	266, 371, 774
TscAI	CASTG	4 cut(s)	14, 339, 574, 928
TseI	GCWGC	1 cut(s)	302
TspDTI	ATGAA	3 cut(s)	330, 465, 879
TspGWI	ACGGA	1 cut(s)	649
TspRI	CASTG	4 cut(s)	14, 339, 574, 928
Vha464I	CTTAAG	1 cut(s)	773
VpaK11BI	GGWCC	1 cut(s)	506
XceI	RCATGY	1 cut(s)	671
XmnI	GAANNNNTTC	1 cut(s)	871
XspI	CTAG	1 cut(s)	819
Zsp2I	ATGCAT	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.