Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001822

Physical Location & Seq

Genomic Coordinates Forward (+)

20208371 .. 20209177

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1245200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAGAATGGATCGATTGAATGAGCATTTTTTTGAGTTGGGCAACACATTAGATCTGGATAGGCCCAAGAACGATAAGGCAACCATTCTTACCGACACTATTCAAATGTTGAAGGATTTAAATGCCGATGTCAACAAACTAAAGGTTGAATGTGCTTCACTTACTGATGAATCCCGTGAGCTAACGCAGGAGAAGAACGAGCTAAGAGAAGAGAAGGCATCTCTAAAATCCGATATTGAAAATCTAAATGTTCAGTGTCAACAAAGACTGAGAGTTATGCTCCCATGGGCTGGCATGGATCCTCCTATTGTTATGGCTCCACCTTACTCATATCCAATGCCTGTAGCTGTCCCTCCCAGCCCAATTCCCATGCACCTATCACTTCAGCTGTATCCTAACTTTCATGCTCAAAATCCTGCTGCTATGCCTAATCCCTATTCAACTTTTGTGCCATATCCAGTACCTACCAATCCTCCAGTAGAACACCCATCACCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

166

Amino Acids

18.75

Weight (kDa)

5.16

Isoelectric Point (pI)

50.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_IRO3	PF23177	4 - 64	3.7e-12	Iron-related transcription factor 3 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19860 AT3G19860 AT3G19860
fragaria_vesca	FvH4_1g11770 FvH4_2g02000 FvH4_2g02000 FvH4_2g02000
malus_domestica	MD02G1132000.v1.1 MD05G1115800.v1.1 MD15G1245200.v1.1
prunus_persica	Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.8G160700_v2.0.a1
pyrus_communis	pycom02g10290 pycom05g11010 pycom15g21570
rosa_chinensis	RchiOBHm_Chr2g0099391 RchiOBHm_Chr6g0245181
rosa_laevigata	RLG00000015318 RLG00000016878
rosa_multiflora	Rmu_co8372605.1_g000001 Rmu_sc0001288.1_g000004 Rmu_sc0002487.1_g000008 Rmu_sc0027529.1_g000004
rosa_roxburghii	Rroxscaffold_2G00143110 Rroxscaffold_3G00242190 Rroxscaffold_7G00215380
rosa_rugosa	Rorug02G0079200 Rorug02G0079300 Rorug02G0079400 Rorug05G0512600 Rorug05G0512700 Rorug05G0512800.1
rosa_samantha	Rh2AG129100 Rh2BG132100 Rh2CG132900 Rh2DG133100 Rh6AG027700 Rh6BG023800 Rh6CG022200 Rh6DG022300
rosa_wichuraiana	Rw2G009940 Rw6G002340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	290
AclWI	GGATC	3 cut(s)	18, 293, 306
AcuI	CTGAAG	1 cut(s)	368
AfaI	GTAC	1 cut(s)	462
AfiI	CCNNNNNNNGG	1 cut(s)	290
AgsI	TTSAA	6 cut(s)	19, 104, 112, 149, 239, 441
AluBI	AGCT	4 cut(s)	181, 202, 347, 388
AluI	AGCT	4 cut(s)	181, 202, 347, 388
AlwI	GGATC	3 cut(s)	18, 293, 306
AoxI	GGCC	1 cut(s)	62
ApeKI	GCWGC	1 cut(s)	419
AspS9I	GGNCC	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	483
BamHI	GGATCC	1 cut(s)	298
BbvI	GCAGC	1 cut(s)	406
BccI	CCATC	1 cut(s)	496
BciVI	GTATCC	1 cut(s)	402
BfmI	CTRYAG	1 cut(s)	342
BfuI	GTATCC	1 cut(s)	402
BglII	AGATCT	1 cut(s)	52
BisI	GCNGC	1 cut(s)	420
BlsI	GCNGC	1 cut(s)	421
BmgT120I	GGNCC	1 cut(s)	63
BmiI	GGNNCC	2 cut(s)	300, 318
BmsI	GCATC	1 cut(s)	227
BplI	GAGNNNNNCTC	2 cut(s)	264, 296
BpmI	CTGGAG	1 cut(s)	459
Bsa29I	ATCGAT	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	284
BsaXI	ACNNNNNCTCC	2 cut(s)	457, 487
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse1I	ACTGG	2 cut(s)	458, 476
BseCI	ATCGAT	1 cut(s)	13
BseDI	CCNNGG	1 cut(s)	284
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	2 cut(s)	458, 476
BseXI	GCAGC	1 cut(s)	406
BseYI	CCCAGC	1 cut(s)	356
BshFI	GGCC	1 cut(s)	64
BshVI	ATCGAT	1 cut(s)	13
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	335
BsnI	GGCC	1 cut(s)	64
Bsp143I	GATC	3 cut(s)	10, 52, 298
Bsp19I	CCATGG	1 cut(s)	284
BspANI	GGCC	1 cut(s)	64
BspCNI	CTCAG	1 cut(s)	261
BspDI	ATCGAT	1 cut(s)	13
BspLI	GGNNCC	2 cut(s)	300, 318
BspPI	GGATC	3 cut(s)	18, 293, 306
BsrI	ACTGG	2 cut(s)	458, 476
BssECI	CCNNGG	1 cut(s)	284
BssMI	GATC	3 cut(s)	10, 52, 298
BssT1I	CCWWGG	1 cut(s)	284
Bst4CI	ACNGT	1 cut(s)	495
Bst6I	CTCTTC	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	292
BstDEI	CTNAG	2 cut(s)	203, 269
BstDSI	CCRYGG	1 cut(s)	284
BstKTI	GATC	3 cut(s)	13, 55, 301
BstMBI	GATC	3 cut(s)	10, 52, 298
BstSFI	CTRYAG	1 cut(s)	342
BstV1I	GCAGC	1 cut(s)	406
BstX2I	RGATCY	2 cut(s)	52, 298
BstYI	RGATCY	2 cut(s)	52, 298
Bsu15I	ATCGAT	1 cut(s)	13
BsuI	GTATCC	1 cut(s)	402
BsuRI	GGCC	1 cut(s)	64
BsuTUI	ATCGAT	1 cut(s)	13
BtgI	CCRYGG	1 cut(s)	284
BtsIMutI	CAGTG	1 cut(s)	260
Cac8I	GCNNGC	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	63
ClaI	ATCGAT	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	461
CviAII	CATG	4 cut(s)	285, 295, 370, 404
CviJI	RGCY	8 cut(s)	64, 181, 202, 290, 317, 347, 360, 388
CviKI_1	RGCY	8 cut(s)	64, 181, 202, 290, 317, 347, 360, 388
CviQI	GTAC	1 cut(s)	461
DdeI	CTNAG	2 cut(s)	203, 269
DpnI	GATC	3 cut(s)	12, 54, 300
DpnII	GATC	3 cut(s)	10, 52, 298
DraI	TTTAAA	1 cut(s)	120
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	284
Eco57I	CTGAAG	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	284
FaeI	CATG	4 cut(s)	288, 298, 373, 407
FaiI	YATR	9 cut(s)	278, 286, 296, 314, 331, 371, 405, 425, 454
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	4 cut(s)	284, 294, 369, 403
Fnu4HI	GCNGC	1 cut(s)	420
Fsp4HI	GCNGC	1 cut(s)	420
GluI	GCNGC	1 cut(s)	420
GsaI	CCCAGC	1 cut(s)	360
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	1 cut(s)	64
Hin1II	CATG	4 cut(s)	288, 298, 373, 407
HincII	GTYRAC	2 cut(s)	133, 260
HindII	GTYRAC	2 cut(s)	133, 260
HinfI	GANTC	1 cut(s)	170
HphI	GGTGA	1 cut(s)	483
Hpy166II	GTNNAC	2 cut(s)	133, 260
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	2 cut(s)	133, 260
HpyAV	CCTTC	2 cut(s)	106, 208
HpyCH4III	ACNGT	1 cut(s)	495
HpyCH4V	TGCA	1 cut(s)	373
HpyF3I	CTNAG	2 cut(s)	203, 269
Hsp92II	CATG	4 cut(s)	288, 298, 373, 407
Kzo9I	GATC	3 cut(s)	10, 52, 298
LmnI	GCTCC	2 cut(s)	285, 322
LpnPI	CCDG	8 cut(s)	41, 173, 276, 354, 370, 429, 471, 489
Lsp1109I	GCAGC	1 cut(s)	406
LweI	GCATC	1 cut(s)	227
MalI	GATC	3 cut(s)	12, 54, 300
MboI	GATC	3 cut(s)	10, 52, 298
MboII	GAAGA	2 cut(s)	205, 221
MflI	RGATCY	2 cut(s)	52, 298
MluCI	AATT	1 cut(s)	363
MnlI	CCTC	3 cut(s)	312, 363, 483
MseI	TTAA	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	388
NcoI	CCATGG	1 cut(s)	284
NdeII	GATC	3 cut(s)	10, 52, 298
NlaIII	CATG	4 cut(s)	288, 298, 373, 407
NlaIV	GGNNCC	2 cut(s)	300, 318
PfeI	GAWTC	1 cut(s)	170
PflMI	CCANNNNNTGG	1 cut(s)	290
PkrI	GCNGC	1 cut(s)	421
PspFI	CCCAGC	1 cut(s)	356
PspN4I	GGNNCC	2 cut(s)	300, 318
PspPI	GGNCC	1 cut(s)	63
PsuI	RGATCY	2 cut(s)	52, 298
PvuII	CAGCTG	1 cut(s)	388
RsaI	GTAC	1 cut(s)	462
RsaNI	GTAC	1 cut(s)	461
SaqAI	TTAA	1 cut(s)	119
SatI	GCNGC	1 cut(s)	420
Sau3AI	GATC	3 cut(s)	10, 52, 298
Sau96I	GGNCC	1 cut(s)	63
SetI	ASST	8 cut(s)	147, 183, 204, 325, 349, 378, 390, 466
SfaNI	GCATC	1 cut(s)	227
SfcI	CTRYAG	1 cut(s)	342
SmiI	ATTTAAAT	1 cut(s)	120
Sse9I	AATT	1 cut(s)	363
StyI	CCWWGG	1 cut(s)	284
SwaI	ATTTAAAT	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	495
TaqI	TCGA	1 cut(s)	13
TasI	AATT	1 cut(s)	363
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TscAI	CASTG	1 cut(s)	260
TseI	GCWGC	1 cut(s)	419
TspDTI	ATGAA	2 cut(s)	183, 392
TspRI	CASTG	1 cut(s)	260
Van91I	CCANNNNNTGG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.