Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001822

Physical Location & Seq

Genomic Coordinates Forward (+)

10066335 .. 10068853

Gene Structure 2519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G009940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGTTGAAGGATTTAACGTCGGATGTGAACAAACTGAAGGCTGAGTGTGCAGCCCTCAATGATGAATCCCATGAGCTGACAGTGGAGAAGAATGAGCTAAGAGAAGAGAAGGCATCTTTAAAATCTGATATTGAGAATCTCAATGCTCAATATCAGCAAAGAGTGAGGGTTATGTTTCCATGGGGGGCTATGGATCCTTCTGTTGTTATGGCTCCACCTTATTCATATCCAATGCCTGTAGCTGTTCCGCCCGGTCCAATTCCTATGCACCCATCGCTTCAGCCCTTTCCTTACTATCAAACTCAAAATCCAGCCACTGTTCCCAATTCTTGTCCAACTTTTGTCTCATTTCCAACTCCTATCAATCGACCAGTAGAACAGCCGTTACCCCAACCCCAATATGCATCTTTTTCACATGTTTCAAGTAAGCAAGATTCCAAAAGCAAGTCATCAGATCATCAAAGGGGAAGCAATGCTGAAAGATGTGATGGCTCCAATGATGTGGCAACAGAGCTTGTACTTAAGATGCCTGGATCTTCAGCACATCAGGAGTCATCTTGTGGGGCTAGGAAGTGGAAGCAATCACGAACGAAAGATAGGAGCATTACAGATGGAAGCTCTTCGAGTAGGTATTCTTCATCTCAAGTTGTTCAGGAGAGTTCGTCTAACAGTGTAGGTGATATCCCCAAGACCAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

233

Amino Acids

25.66

Weight (kDa)

6.96

Isoelectric Point (pI)

69.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19860 AT3G19860 AT3G19860
fragaria_vesca	FvH4_1g11770 FvH4_2g02000 FvH4_2g02000 FvH4_2g02000
malus_domestica	MD02G1132000.v1.1 MD05G1115800.v1.1 MD15G1245200.v1.1
prunus_persica	Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.8G160700_v2.0.a1
pyrus_communis	pycom02g10290 pycom05g11010 pycom15g21570
rosa_chinensis	RchiOBHm_Chr2g0099391 RchiOBHm_Chr6g0245181
rosa_laevigata	RLG00000015318 RLG00000016878
rosa_multiflora	Rmu_co8372605.1_g000001 Rmu_sc0001288.1_g000004 Rmu_sc0002487.1_g000008 Rmu_sc0027529.1_g000004
rosa_roxburghii	Rroxscaffold_2G00143110 Rroxscaffold_3G00242190 Rroxscaffold_7G00215380
rosa_rugosa	Rorug02G0079200 Rorug02G0079300 Rorug02G0079400 Rorug05G0512600 Rorug05G0512700 Rorug05G0512800.1
rosa_samantha	Rh2AG129100 Rh2BG132100 Rh2CG132900 Rh2DG133100 Rh6AG027700 Rh6BG023800 Rh6CG022200 Rh6DG022300
rosa_wichuraiana	Rw2G009940 Rw6G002340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	248
AclWI	GGATC	3 cut(s)	188, 201, 541
AcuI	CTGAAG	3 cut(s)	56, 263, 522
AfaI	GTAC	1 cut(s)	519
AflII	CTTAAG	1 cut(s)	521
AflIII	ACRYGT	1 cut(s)	415
AgsI	TTSAA	2 cut(s)	7, 423
AjnI	CCWGG	1 cut(s)	529
AluBI	AGCT	5 cut(s)	76, 97, 242, 514, 618
AluI	AGCT	5 cut(s)	76, 97, 242, 514, 618
Alw26I	GTCTC	1 cut(s)	349
AlwI	GGATC	3 cut(s)	188, 201, 541
AlwNI	CAGNNNCTG	1 cut(s)	317
ApeKI	GCWGC	1 cut(s)	50
Asp700I	GAANNNNTTC	1 cut(s)	619
AspS9I	GGNCC	1 cut(s)	254
AsuC2I	CCSGG	1 cut(s)	252
AsuHPI	GGTGA	1 cut(s)	689
AvaII	GGWCC	1 cut(s)	254
BamHI	GGATCC	1 cut(s)	193
BarI	GAAGNNNNNNTAC	2 cut(s)	619, 651
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	3 cut(s)	280, 482, 605
BceAI	ACGGC	1 cut(s)	367
BciT130I	CCWGG	1 cut(s)	531
BcnI	CCSGG	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	349
BfaI	CTAG	1 cut(s)	567
BfmI	CTRYAG	1 cut(s)	237
BfrI	CTTAAG	1 cut(s)	521
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	2 cut(s)	252, 531
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	3 cut(s)	195, 213, 493
BmrFI	CCNGG	2 cut(s)	252, 531
BmsI	GCATC	3 cut(s)	122, 413, 516
BpuEI	CTTGAG	1 cut(s)	627
BpuMI	CCSGG	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	179
BsaXI	ACNNNNNCTCC	2 cut(s)	647, 677
Bse1I	ACTGG	1 cut(s)	371
Bse3DI	GCAATG	1 cut(s)	478
BseBI	CCWGG	1 cut(s)	531
BseDI	CCNNGG	1 cut(s)	179
BseGI	GGATG	1 cut(s)	28
BseMI	GCAATG	1 cut(s)	478
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	371
BseXI	GCAGC	1 cut(s)	62
BsgI	GTGCAG	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	252
BsmAI	GTCTC	1 cut(s)	349
Bsp143I	GATC	3 cut(s)	193, 454, 533
Bsp19I	CCATGG	1 cut(s)	179
BspACI	CCGC	1 cut(s)	248
BspCNI	CTCAG	1 cut(s)	34
BspLI	GGNNCC	3 cut(s)	195, 213, 493
BspPI	GGATC	3 cut(s)	188, 201, 541
BspQI	GCTCTTC	1 cut(s)	625
BspTI	CTTAAG	1 cut(s)	521
BsrDI	GCAATG	1 cut(s)	478
BsrI	ACTGG	1 cut(s)	371
BssECI	CCNNGG	1 cut(s)	179
BssMI	GATC	3 cut(s)	193, 454, 533
BssT1I	CCWWGG	1 cut(s)	179
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	3 cut(s)	82, 319, 671
Bst6I	CTCTTC	2 cut(s)	99, 625
BstAFI	CTTAAG	1 cut(s)	521
BstDEI	CTNAG	2 cut(s)	42, 98
BstDSI	CCRYGG	1 cut(s)	179
BstF5I	GGATG	1 cut(s)	28
BstKTI	GATC	3 cut(s)	196, 457, 536
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	3 cut(s)	193, 454, 533
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 274
BstNI	CCWGG	1 cut(s)	531
BstNSI	RCATGY	1 cut(s)	419
BstSCI	CCNGG	2 cut(s)	250, 529
BstSFI	CTRYAG	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	62
BstX2I	RGATCY	2 cut(s)	193, 533
BstXI	CCANNNNNNTGG	1 cut(s)	502
BstYI	RGATCY	2 cut(s)	193, 533
BtgI	CCRYGG	1 cut(s)	179
BtgZI	GCGATG	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	28
BtsIMutI	CAGTG	3 cut(s)	87, 315, 676
CaiI	CAGNNNCTG	1 cut(s)	317
Cfr13I	GGNCC	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	518
CviAII	CATG	3 cut(s)	71, 180, 416
CviQI	GTAC	1 cut(s)	518
DdeI	CTNAG	2 cut(s)	42, 98
DpnI	GATC	3 cut(s)	195, 456, 535
DpnII	GATC	3 cut(s)	193, 454, 533
DraI	TTTAAA	1 cut(s)	120
Eam1104I	CTCTTC	2 cut(s)	99, 625
EarI	CTCTTC	2 cut(s)	99, 625
EciI	GGCGGA	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	179
Eco32I	GATATC	1 cut(s)	682
Eco47I	GGWCC	1 cut(s)	254
Eco57I	CTGAAG	3 cut(s)	56, 263, 522
EcoRII	CCWGG	1 cut(s)	529
EcoRV	GATATC	1 cut(s)	682
EcoT14I	CCWWGG	1 cut(s)	179
EcoT22I	ATGCAT	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	179
FaeI	CATG	3 cut(s)	74, 183, 419
FaiI	YATR	9 cut(s)	72, 173, 181, 191, 209, 226, 266, 402, 417
FatI	CATG	3 cut(s)	70, 179, 415
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	1 cut(s)	567
GluI	GCNGC	1 cut(s)	51
HapII	CCGG	1 cut(s)	252
Hin1II	CATG	3 cut(s)	74, 183, 419
HinfI	GANTC	4 cut(s)	65, 136, 434, 551
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	1 cut(s)	689
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	3 cut(s)	22, 127, 454
Hpy188III	TCNNGA	3 cut(s)	548, 585, 653
Hpy8I	GTNNAC	1 cut(s)	28
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	3 cut(s)	31, 103, 207
HpyCH4III	ACNGT	3 cut(s)	82, 319, 671
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	3 cut(s)	50, 268, 404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 274
HpyF3I	CTNAG	2 cut(s)	42, 98
HpySE526I	ACGT	1 cut(s)	17
Hsp92II	CATG	3 cut(s)	74, 183, 419
Kzo9I	GATC	3 cut(s)	193, 454, 533
LguI	GCTCTTC	1 cut(s)	625
LmnI	GCTCC	3 cut(s)	217, 497, 600
LpnPI	CCDG	8 cut(s)	249, 265, 324, 384, 516, 533, 543, 638
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	3 cut(s)	122, 413, 516
MaeI	CTAG	1 cut(s)	567
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	1 cut(s)	384
MalI	GATC	3 cut(s)	195, 456, 535
MboI	GATC	3 cut(s)	193, 454, 533
MboII	GAAGA	5 cut(s)	100, 116, 528, 612, 627
MflI	RGATCY	2 cut(s)	193, 533
MluCI	AATT	2 cut(s)	258, 325
MlyI	GAGTC	1 cut(s)	560
MmeI	TCCRAC	2 cut(s)	359, 377
MnlI	CCTC	2 cut(s)	65, 159
Mph1103I	ATGCAT	1 cut(s)	406
MroXI	GAANNNNTTC	1 cut(s)	619
MseI	TTAA	3 cut(s)	14, 119, 522
MspCI	CTTAAG	1 cut(s)	521
MspI	CCGG	1 cut(s)	252
MspR9I	CCNGG	2 cut(s)	252, 531
MvaI	CCWGG	1 cut(s)	531
MwoI	GCNNNNNNNGC	2 cut(s)	47, 274
NciI	CCSGG	1 cut(s)	252
NcoI	CCATGG	1 cut(s)	179
NdeII	GATC	3 cut(s)	193, 454, 533
NlaIII	CATG	3 cut(s)	74, 183, 419
NlaIV	GGNNCC	3 cut(s)	195, 213, 493
NsiI	ATGCAT	1 cut(s)	406
NspI	RCATGY	1 cut(s)	419
PciI	ACATGT	1 cut(s)	415
PciSI	GCTCTTC	1 cut(s)	625
PdmI	GAANNNNTTC	1 cut(s)	619
PfeI	GAWTC	3 cut(s)	65, 136, 434
PkrI	GCNGC	1 cut(s)	52
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
PscI	ACATGT	1 cut(s)	415
Psp6I	CCWGG	1 cut(s)	529
PspGI	CCWGG	1 cut(s)	529
PspN4I	GGNNCC	3 cut(s)	195, 213, 493
PspPI	GGNCC	1 cut(s)	254
PsrI	GAACNNNNNNTAC	2 cut(s)	369, 401
PstNI	CAGNNNCTG	1 cut(s)	317
PsuI	RGATCY	2 cut(s)	193, 533
RsaI	GTAC	1 cut(s)	519
RsaNI	GTAC	1 cut(s)	518
SapI	GCTCTTC	1 cut(s)	625
SaqAI	TTAA	3 cut(s)	14, 119, 522
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	3 cut(s)	193, 454, 533
Sau96I	GGNCC	1 cut(s)	254
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	2 cut(s)	252, 531
SetI	ASST	9 cut(s)	20, 78, 99, 220, 244, 516, 620, 632, 679
SfaNI	GCATC	3 cut(s)	122, 413, 516
SfcI	CTRYAG	1 cut(s)	237
SinI	GGWCC	1 cut(s)	254
SmlI	CTYRAG	2 cut(s)	521, 642
SmoI	CTYRAG	2 cut(s)	521, 642
Sse9I	AATT	2 cut(s)	258, 325
SsiI	CCGC	1 cut(s)	248
SspMI	CTAG	1 cut(s)	567
StyD4I	CCNGG	2 cut(s)	250, 529
StyI	CCWWGG	1 cut(s)	179
TaaI	ACNGT	3 cut(s)	82, 319, 671
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	2 cut(s)	367, 623
TasI	AATT	2 cut(s)	258, 325
TatI	WGTACW	1 cut(s)	517
TfiI	GAWTC	3 cut(s)	65, 136, 434
Tru1I	TTAA	3 cut(s)	14, 119, 522
Tru9I	TTAA	3 cut(s)	14, 119, 522
TscAI	CASTG	3 cut(s)	87, 322, 676
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	3 cut(s)	78, 213, 627
TspRI	CASTG	3 cut(s)	87, 322, 676
Vha464I	CTTAAG	1 cut(s)	521
VpaK11BI	GGWCC	1 cut(s)	254
XceI	RCATGY	1 cut(s)	419
XmnI	GAANNNNTTC	1 cut(s)	619
XspI	CTAG	1 cut(s)	567
Zsp2I	ATGCAT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.