Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001822

Physical Location & Seq

Genomic Coordinates Forward (+)

3443121 .. 3448877

Gene Structure 5757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG027700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGCAGACTCTCATGGATCAGCTGAAACCCGAAGCCTTCATCCAAACCCCCCCAAACCCTTTTCCTTCCTCCACCGAATTTCCTCAACCCTCTTTCGATTCCCTCATCCCCTCCAATCGCTCCATACCCAATTCAAGCCAAATGCCCGAAGGGGAAGTTAAGGATGGTCTAGCTGCTAGGAAGATGCAAAAGGCGGACCGGGAGAAATTAAGGAGGGATCGACTGAATGAGCATTTTATGGAGTTGGGAAAAGTCTTAGATCCAGACAGACCCAAAAATGACAAGGCAACCATTCTAGCTGATACAATTCAAGTGCTAAAGGATTTGTCATCCGAAGTAGACAAACTTAAAACCGAGTGCACTTCGTTAACAGAAGAGTCTCGTGAGTTGACAAATGAGAAGAACGAGTTGAGAGAAGAGAAGGCATCTCTTAAAACTGACATTGAGAACCTTAACGCTCAGTACCAGCAGAGACTCAGGGCCATGTACCCTTGGGGTGCTGTGGATCACTCGGTTGTAATGGCCCCACCTTCATATCCATTTCCTATGCCAATGCCAATGCCTCCAGGGTCAATTCCCATGCATCCCCATATGCAGCCATACCCTTATTTCGGAAATCAAAATCCCGGGGTCATTCCTAACCCCTGTTCAACTTTTGTTCCATATATCACCCCTAATACTCTGGTTGAACAGCAGCCCACCCCGTATGTATCTCCAGTTGTGCATCCAGCAACTCAGTCTCATGTTTCAGTCAAACAAGATTCCAGAAACAAATCATCTGGGACAAGTAGAATTGACAAAAGTGAAGATTCAAACGATGTCACGACAGAACTAGAACTGAAGACACCAGGGTCAACAGCTGATCAGGATTTATCACCAGTAAAAAGAAAATCTCAGAAGTCAGCAAGGAAAGAACTTAAGGTTACTGAAGGGACTTCTTCAAGTAGATGTTCGTCTTCTCATAGTGCACAGGGTAGCTCATCTAACAGTGTAGTTGGTGGCAAAAAGGATGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

339

Amino Acids

37.65

Weight (kDa)

6.04

Isoelectric Point (pI)

56.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_IRO3	PF23177	59 - 133	1.9e-17	Iron-related transcription factor 3 bHLH domain
HLH	PF00010	60 - 109	5.2e-10	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19860 AT3G19860 AT3G19860
fragaria_vesca	FvH4_1g11770 FvH4_2g02000 FvH4_2g02000 FvH4_2g02000
malus_domestica	MD02G1132000.v1.1 MD05G1115800.v1.1 MD15G1245200.v1.1
prunus_persica	Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.8G160700_v2.0.a1
pyrus_communis	pycom02g10290 pycom05g11010 pycom15g21570
rosa_chinensis	RchiOBHm_Chr2g0099391 RchiOBHm_Chr6g0245181
rosa_laevigata	RLG00000015318 RLG00000016878
rosa_multiflora	Rmu_co8372605.1_g000001 Rmu_sc0001288.1_g000004 Rmu_sc0002487.1_g000008 Rmu_sc0027529.1_g000004
rosa_roxburghii	Rroxscaffold_2G00143110 Rroxscaffold_3G00242190 Rroxscaffold_7G00215380
rosa_rugosa	Rorug02G0079200 Rorug02G0079300 Rorug02G0079400 Rorug05G0512600 Rorug05G0512700 Rorug05G0512800.1
rosa_samantha	Rh2AG129100 Rh2BG132100 Rh2CG132900 Rh2DG133100 Rh6AG027700 Rh6BG023800 Rh6CG022200 Rh6DG022300
rosa_wichuraiana	Rw2G009940 Rw6G002340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	850
AccI	GTMKAC	1 cut(s)	339
AciI	CCGC	1 cut(s)	194
AclWI	GGATC	4 cut(s)	24, 225, 254, 513
AcsI	RAATTY	1 cut(s)	77
AcuI	CTGAAG	2 cut(s)	860, 948
AfaI	GTAC	2 cut(s)	464, 488
AfiI	CCNNNNNNNGG	1 cut(s)	611
AflII	CTTAAG	1 cut(s)	917
AgsI	TTSAA	6 cut(s)	135, 311, 651, 689, 813, 942
AjnI	CCWGG	2 cut(s)	565, 847
AluBI	AGCT	5 cut(s)	22, 173, 299, 860, 978
AluI	AGCT	5 cut(s)	22, 173, 299, 860, 978
Alw21I	GWGCWC	2 cut(s)	362, 970
Alw26I	GTCTC	3 cut(s)	384, 466, 744
Alw44I	GTGCAC	2 cut(s)	358, 966
AlwI	GGATC	4 cut(s)	24, 225, 254, 513
Ama87I	CYCGRG	1 cut(s)	626
AoxI	GGCC	2 cut(s)	480, 522
ApaLI	GTGCAC	2 cut(s)	358, 966
ApeKI	GCWGC	3 cut(s)	173, 595, 694
ApoI	RAATTY	1 cut(s)	77
AspS9I	GGNCC	3 cut(s)	196, 480, 523
AsuC2I	CCSGG	3 cut(s)	200, 627, 628
AsuHPI	GGTGA	2 cut(s)	661, 867
AvaI	CYCGRG	1 cut(s)	626
AvaII	GGWCC	1 cut(s)	196
BaeGI	GKGCMC	2 cut(s)	362, 970
BauI	CACGAG	1 cut(s)	381
BbsI	GAAGAC	2 cut(s)	848, 948
Bbv12I	GWGCWC	2 cut(s)	362, 970
BbvI	GCAGC	3 cut(s)	160, 607, 706
BccI	CCATC	1 cut(s)	158
BciT130I	CCWGG	2 cut(s)	567, 849
BclI	TGATCA	1 cut(s)	862
BcnI	CCSGG	3 cut(s)	200, 627, 628
BcoDI	GTCTC	3 cut(s)	384, 466, 744
BfaI	CTAG	4 cut(s)	170, 177, 296, 833
BfrI	CTTAAG	1 cut(s)	917
BisI	GCNGC	3 cut(s)	174, 596, 695
BlsI	GCNGC	3 cut(s)	175, 597, 696
Bme1390I	CCNGG	5 cut(s)	200, 567, 627, 628, 849
Bme18I	GGWCC	1 cut(s)	196
BmeT110I	CYCGRG	1 cut(s)	626
BmgT120I	GGNCC	3 cut(s)	196, 480, 523
BmiI	GGNNCC	1 cut(s)	525
BmrFI	CCNGG	5 cut(s)	200, 567, 627, 628, 849
BmsI	GCATC	4 cut(s)	174, 434, 592, 733
BpiI	GAAGAC	2 cut(s)	848, 948
BpmI	CTGGAG	2 cut(s)	549, 699
BpuMI	CCSGG	3 cut(s)	200, 627, 628
BsaJI	CCNNGG	5 cut(s)	491, 566, 626, 627, 848
Bsc4I	CCNNNNNNNGG	1 cut(s)	611
Bse1I	ACTGG	2 cut(s)	716, 878
BseBI	CCWGG	2 cut(s)	567, 849
BseDI	CCNNGG	5 cut(s)	491, 566, 626, 627, 848
BseGI	GGATG	7 cut(s)	39, 105, 169, 329, 583, 724, 1015
BseLI	CCNNNNNNNGG	1 cut(s)	611
BseMII	CTCAG	4 cut(s)	473, 490, 749, 908
BseNI	ACTGG	2 cut(s)	716, 878
BseSI	GKGCMC	2 cut(s)	362, 970
BseXI	GCAGC	3 cut(s)	160, 607, 706
BshFI	GGCC	2 cut(s)	482, 524
BsiHKAI	GWGCWC	2 cut(s)	362, 970
BsiHKCI	CYCGRG	1 cut(s)	626
BsiSI	CCGG	2 cut(s)	199, 627
BslFI	GGGAC	2 cut(s)	796, 946
BslI	CCNNNNNNNGG	1 cut(s)	611
BsmAI	GTCTC	3 cut(s)	384, 466, 744
BsmFI	GGGAC	2 cut(s)	796, 946
BsnI	GGCC	2 cut(s)	482, 524
BsoBI	CYCGRG	1 cut(s)	626
Bsp1286I	GDGCHC	2 cut(s)	362, 970
Bsp143I	GATC	5 cut(s)	16, 217, 259, 505, 862
BspACI	CCGC	1 cut(s)	194
BspANI	GGCC	2 cut(s)	482, 524
BspCNI	CTCAG	4 cut(s)	472, 489, 748, 907
BspLI	GGNNCC	1 cut(s)	525
BspPI	GGATC	4 cut(s)	24, 225, 254, 513
BspTI	CTTAAG	1 cut(s)	917
BsrI	ACTGG	2 cut(s)	716, 878
BssECI	CCNNGG	5 cut(s)	491, 566, 626, 627, 848
BssMI	GATC	5 cut(s)	16, 217, 259, 505, 862
BssSI	CACGAG	1 cut(s)	381
BssT1I	CCWWGG	1 cut(s)	491
Bst2BI	CACGAG	1 cut(s)	381
Bst2UI	CCWGG	2 cut(s)	567, 849
Bst4CI	ACNGT	1 cut(s)	989
Bst6I	CTCTTC	2 cut(s)	369, 411
BstAFI	CTTAAG	1 cut(s)	917
BstDEI	CTNAG	5 cut(s)	256, 459, 476, 735, 894
BstF5I	GGATG	7 cut(s)	39, 105, 169, 329, 583, 724, 1015
BstKTI	GATC	5 cut(s)	19, 220, 262, 508, 865
BstMAI	GTCTC	3 cut(s)	384, 466, 744
BstMBI	GATC	5 cut(s)	16, 217, 259, 505, 862
BstNI	CCWGG	2 cut(s)	567, 849
BstSCI	CCNGG	5 cut(s)	198, 565, 625, 626, 847
BstSLI	GKGCMC	2 cut(s)	362, 970
BstV1I	GCAGC	3 cut(s)	160, 607, 706
BstV2I	GAAGAC	2 cut(s)	848, 948
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BsuRI	GGCC	2 cut(s)	482, 524
BtsCI	GGATG	7 cut(s)	39, 105, 169, 329, 583, 724, 1015
BtsIMutI	CAGTG	1 cut(s)	994
Cfr13I	GGNCC	3 cut(s)	196, 480, 523
Cfr9I	CCCGGG	1 cut(s)	626
CpoI	CGGWCCG	1 cut(s)	196
Csp6I	GTAC	2 cut(s)	463, 487
CspI	CGGWCCG	1 cut(s)	196
CviAII	CATG	4 cut(s)	13, 484, 580, 743
CviQI	GTAC	2 cut(s)	463, 487
DdeI	CTNAG	5 cut(s)	256, 459, 476, 735, 894
DpnI	GATC	5 cut(s)	18, 219, 261, 507, 864
DpnII	GATC	5 cut(s)	16, 217, 259, 505, 862
DrdI	GACNNNNNNGTC	1 cut(s)	850
DseDI	GACNNNNNNGTC	1 cut(s)	850
Eam1104I	CTCTTC	2 cut(s)	369, 411
EarI	CTCTTC	2 cut(s)	369, 411
EciI	GGCGGA	1 cut(s)	209
Eco130I	CCWWGG	1 cut(s)	491
Eco47I	GGWCC	1 cut(s)	196
Eco57I	CTGAAG	2 cut(s)	860, 948
Eco88I	CYCGRG	1 cut(s)	626
EcoRII	CCWGG	2 cut(s)	565, 847
EcoT14I	CCWWGG	1 cut(s)	491
EcoT22I	ATGCAT	1 cut(s)	585
ErhI	CCWWGG	1 cut(s)	491
FaeI	CATG	4 cut(s)	16, 487, 583, 746
FaqI	GGGAC	2 cut(s)	796, 946
FatI	CATG	4 cut(s)	12, 483, 579, 742
FauNDI	CATATG	1 cut(s)	591
FbaI	TGATCA	1 cut(s)	862
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	3 cut(s)	174, 596, 695
FokI	GGATG	6 cut(s)	26, 92, 176, 316, 570, 711
Fsp4HI	GCNGC	3 cut(s)	174, 596, 695
FspBI	CTAG	4 cut(s)	170, 177, 296, 833
GluI	GCNGC	3 cut(s)	174, 596, 695
GsuI	CTGGAG	2 cut(s)	549, 699
HaeIII	GGCC	2 cut(s)	482, 524
HapII	CCGG	2 cut(s)	199, 627
Hin1II	CATG	4 cut(s)	16, 487, 583, 746
HincII	GTYRAC	3 cut(s)	369, 390, 855
HindII	GTYRAC	3 cut(s)	369, 390, 855
HinfI	GANTC	6 cut(s)	7, 98, 377, 474, 761, 809
HpaI	GTTAAC	1 cut(s)	369
HpaII	CCGG	2 cut(s)	199, 627
HphI	GGTGA	2 cut(s)	661, 867
Hpy166II	GTNNAC	6 cut(s)	340, 360, 369, 390, 855, 968
Hpy188I	TCNGA	3 cut(s)	334, 614, 897
Hpy188III	TCNNGA	5 cut(s)	263, 383, 765, 823, 866
Hpy8I	GTNNAC	6 cut(s)	340, 360, 369, 390, 855, 968
HpyAV	CCTTC	6 cut(s)	46, 75, 143, 415, 540, 923
HpyCH4III	ACNGT	1 cut(s)	989
HpyCH4V	TGCA	7 cut(s)	4, 187, 360, 583, 595, 724, 968
HpyF3I	CTNAG	5 cut(s)	256, 459, 476, 735, 894
Hsp92II	CATG	4 cut(s)	16, 487, 583, 746
Ksp22I	TGATCA	1 cut(s)	862
KspAI	GTTAAC	1 cut(s)	369
Kzo9I	GATC	5 cut(s)	16, 217, 259, 505, 862
LmnI	GCTCC	1 cut(s)	125
Lsp1109I	GCAGC	3 cut(s)	160, 607, 706
LweI	GCATC	4 cut(s)	174, 434, 592, 733
MaeI	CTAG	4 cut(s)	170, 177, 296, 833
MaeIII	GTNAC	2 cut(s)	820, 922
MalI	GATC	5 cut(s)	18, 219, 261, 507, 864
MboI	GATC	5 cut(s)	16, 217, 259, 505, 862
MboII	GAAGA	8 cut(s)	193, 386, 412, 428, 818, 853, 930, 948
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	2 cut(s)	362, 970
MluCI	AATT	6 cut(s)	77, 130, 206, 306, 573, 792
MlyI	GAGTC	2 cut(s)	386, 468
MnlI	CCTC	7 cut(s)	79, 93, 100, 113, 121, 207, 573
Mph1103I	ATGCAT	1 cut(s)	585
MseI	TTAA	7 cut(s)	159, 209, 348, 368, 432, 453, 918
MspA1I	CMGCKG	2 cut(s)	22, 860
MspCI	CTTAAG	1 cut(s)	917
MspI	CCGG	2 cut(s)	199, 627
MspR9I	CCNGG	5 cut(s)	200, 567, 627, 628, 849
MvaI	CCWGG	2 cut(s)	567, 849
NciI	CCSGG	3 cut(s)	200, 627, 628
NdeI	CATATG	1 cut(s)	591
NdeII	GATC	5 cut(s)	16, 217, 259, 505, 862
NlaIII	CATG	4 cut(s)	16, 487, 583, 746
NlaIV	GGNNCC	1 cut(s)	525
NmuCI	GTSAC	1 cut(s)	820
NsiI	ATGCAT	1 cut(s)	585
PfeI	GAWTC	3 cut(s)	98, 761, 809
PkrI	GCNGC	3 cut(s)	175, 597, 696
PleI	GAGTC	2 cut(s)	385, 468
PpsI	GAGTC	2 cut(s)	385, 468
Psp6I	CCWGG	2 cut(s)	565, 847
PspGI	CCWGG	2 cut(s)	565, 847
PspN4I	GGNNCC	1 cut(s)	525
PspPI	GGNCC	3 cut(s)	196, 480, 523
PsuI	RGATCY	1 cut(s)	259
PvuII	CAGCTG	2 cut(s)	22, 860
RsaI	GTAC	2 cut(s)	464, 488
RsaNI	GTAC	2 cut(s)	463, 487
Rsr2I	CGGWCCG	1 cut(s)	196
RsrII	CGGWCCG	1 cut(s)	196
SaqAI	TTAA	7 cut(s)	159, 209, 348, 368, 432, 453, 918
SatI	GCNGC	3 cut(s)	174, 596, 695
Sau3AI	GATC	5 cut(s)	16, 217, 259, 505, 862
Sau96I	GGNCC	3 cut(s)	196, 480, 523
SchI	GAGTC	2 cut(s)	386, 468
ScrFI	CCNGG	5 cut(s)	200, 567, 627, 628, 849
SduI	GDGCHC	2 cut(s)	362, 970
SetI	ASST	8 cut(s)	24, 175, 301, 453, 532, 862, 924, 980
SfaNI	GCATC	4 cut(s)	174, 434, 592, 733
SinI	GGWCC	1 cut(s)	196
SmaI	CCCGGG	1 cut(s)	628
SmlI	CTYRAG	1 cut(s)	917
SmoI	CTYRAG	1 cut(s)	917
Sse9I	AATT	6 cut(s)	77, 130, 206, 306, 573, 792
SsiI	CCGC	1 cut(s)	194
SspMI	CTAG	4 cut(s)	170, 177, 296, 833
StyD4I	CCNGG	5 cut(s)	198, 565, 625, 626, 847
StyI	CCWWGG	1 cut(s)	491
TaaI	ACNGT	1 cut(s)	989
TaqI	TCGA	2 cut(s)	96, 220
TasI	AATT	6 cut(s)	77, 130, 206, 306, 573, 792
TfiI	GAWTC	3 cut(s)	98, 761, 809
Tru1I	TTAA	7 cut(s)	159, 209, 348, 368, 432, 453, 918
Tru9I	TTAA	7 cut(s)	159, 209, 348, 368, 432, 453, 918
TscAI	CASTG	1 cut(s)	994
TseFI	GTSAC	1 cut(s)	820
TseI	GCWGC	3 cut(s)	173, 595, 694
Tsp45I	GTSAC	1 cut(s)	820
TspDTI	ATGAA	2 cut(s)	28, 522
TspMI	CCCGGG	1 cut(s)	626
TspRI	CASTG	1 cut(s)	994
Vha464I	CTTAAG	1 cut(s)	917
VneI	GTGCAC	2 cut(s)	358, 966
VpaK11BI	GGWCC	1 cut(s)	196
XapI	RAATTY	1 cut(s)	77
XmaI	CCCGGG	1 cut(s)	626
XmiI	GTMKAC	1 cut(s)	339
XspI	CTAG	4 cut(s)	170, 177, 296, 833
Zsp2I	ATGCAT	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.