Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001822

Physical Location & Seq

Genomic Coordinates Forward (+)

69715021 .. 69718630

Gene Structure 3610 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0512700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGAGACCGGTGTCACCGGCGCTGACGTCAGCGGAGCGACCACCACCACCATAAGCCTGAGCGTCAAGTTCAGTGGCCGAACCATACCCATCACAAATCTCTCACCGGACTCGACCATCAAGGACCTCAAGGCCCTTCTTCAACCTCTCACCAATGTCCTCCCTCGCGGCCAAAAGCTCATATCCAAAGGGAAGCTTTTGGTGGATGCAATGACGCTGAGGGAGTCTGAGATCACTAATGGGGCCAAGATCATGCTCATGGCTTCTCAGGGTTTGCACCAAGGGGCTGGACCTATTCTTAAACAAGCTCAGAGTCGCTCCATTTCTAGAGACAACAATGCTGATAGATCCGATAAAGGAAAGGCGAAAAAAGCTGCTGTTGATAAGAACAGGTTGGAACGATGGAAGGCTACTGGAGTTATAGGACTCAGTGAGTGTAACTTGAAGGCTATACCTGAGGAAGTCTGGGGGGATTCTAGAACTTCTGCAAGAGTTCTTGACCTCAGCAACAATGTTATTCAAGAAGTACCCGCCTTGATTGGCTGTATGAATTCCTTGCAGAAACTGTTACTTGATTCAAATGATCTATCGGATGACTCTGTTAGCTGGGAAGCACTAAAATCTTTGAAGTCTTTAACTGTTCTTTCTCTGAACCAAAACCGTTTAACTAGATTGTCATCGGATCTGGGCTGGTTGCCATCACTAAGGCAACTTCATGTTGCGAACAACATGTTGTCTAGCCTCCCAAGTGAATTACGATATCTGCCTAAGCTTGAAGTTCTGAAAGTCAACAATAATAGGATCAGCACCATTCCTACATGGATAGGGGACCTTATTACTCTTATTGAGGTTGATCTTTCATCGAATCTTCTGTCAGATTTGCCGGAGACATTTAGCAATTTGCATAATCTAAAGTCTCTGTCTCTCAGTAATAATGGGCTGAAATCTCTTCCTTCTTCGCTATTCAAAATGTGCCTAATGCTCACAAGACTTGATTTGCACAACACAGAAATAACCATGGATATCCTTCGTCAGATTGAGGGATGGGAAAACTTCGATGAACGCCGTCGCTTGAAGCAACAGAAGAAACTGGATTTTCGCGTTGTGGGCTCTGCTGCATTTGATGAAGGTGCTGATAAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

381

Amino Acids

41.95

Weight (kDa)

9.12

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	21 - 90	1e-14	Ubiquitin family
LRR_8	PF13855	142 - 196	8.1e-06	Leucine rich repeat
LRR_14	PF23598	142 - 241	8.3e-06	Leucine-rich repeat region
LRR_9	PF14580	191 - 269	4.3e-06	Leucine-rich repeat
LRR_8	PF13855	200 - 245	1.2e-06	Leucine rich repeat
LRR_14	PF23598	201 - 283	1.9e-07	Leucine-rich repeat region
LRR_4	PF12799	210 - 249	4.6e-06	Leucine Rich repeats (2 copies)
LRR_8	PF13855	233 - 291	1.3e-06	Leucine rich repeat
LRR_4	PF12799	233 - 273	2.7e-07	Leucine Rich repeats (2 copies)
LRR_8	PF13855	256 - 314	3.8e-09	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19860 AT3G19860 AT3G19860
fragaria_vesca	FvH4_1g11770 FvH4_2g02000 FvH4_2g02000 FvH4_2g02000
malus_domestica	MD02G1132000.v1.1 MD05G1115800.v1.1 MD15G1245200.v1.1
prunus_persica	Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.8G160700_v2.0.a1
pyrus_communis	pycom02g10290 pycom05g11010 pycom15g21570
rosa_chinensis	RchiOBHm_Chr2g0099391 RchiOBHm_Chr6g0245181
rosa_laevigata	RLG00000015318 RLG00000016878
rosa_multiflora	Rmu_co8372605.1_g000001 Rmu_sc0001288.1_g000004 Rmu_sc0002487.1_g000008 Rmu_sc0027529.1_g000004
rosa_roxburghii	Rroxscaffold_2G00143110 Rroxscaffold_3G00242190 Rroxscaffold_7G00215380
rosa_rugosa	Rorug02G0079200 Rorug02G0079300 Rorug02G0079400 Rorug05G0512600 Rorug05G0512700 Rorug05G0512800.1
rosa_samantha	Rh2AG129100 Rh2BG132100 Rh2CG132900 Rh2DG133100 Rh6AG027700 Rh6BG023800 Rh6CG022200 Rh6DG022300
rosa_wichuraiana	Rw2G009940 Rw6G002340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	30
AccII	CGCG	2 cut(s)	168, 1101
AciI	CCGC	3 cut(s)	33, 168, 531
AclWI	GGATC	3 cut(s)	342, 690, 809
AcoI	YGGCCR	2 cut(s)	76, 169
AcsI	RAATTY	1 cut(s)	550
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	1 cut(s)	528
AflIII	ACRYGT	1 cut(s)	729
AgeI	ACCGGT	1 cut(s)	8
AgsI	TTSAA	8 cut(s)	143, 445, 521, 579, 628, 776, 967, 1075
AluBI	AGCT	7 cut(s)	178, 196, 308, 374, 606, 772, 1143
AluI	AGCT	7 cut(s)	178, 196, 308, 374, 606, 772, 1143
Alw26I	GTCTC	4 cut(s)	324, 881, 921, 927
AlwI	GGATC	3 cut(s)	342, 690, 809
AlwNI	CAGNNNCTG	1 cut(s)	565
AoxI	GGCC	4 cut(s)	76, 132, 169, 243
ApeKI	GCWGC	2 cut(s)	374, 1115
ApoI	RAATTY	1 cut(s)	550
ArsI	GACNNNNNNTTYG	2 cut(s)	857, 889
AsiGI	ACCGGT	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	23
AspS9I	GGNCC	5 cut(s)	124, 133, 243, 290, 829
AsuHPI	GGTGA	3 cut(s)	7, 96, 142
AvaII	GGWCC	3 cut(s)	124, 290, 829
AxyI	CCTNAGG	1 cut(s)	456
BanII	GRGCYC	1 cut(s)	1112
BbvCI	CCTCAGC	2 cut(s)	218, 503
BbvI	GCAGC	2 cut(s)	361, 1102
BccI	CCATC	5 cut(s)	98, 125, 396, 706, 1038
BceAI	ACGGC	1 cut(s)	1050
BcoDI	GTCTC	4 cut(s)	324, 881, 921, 927
BfaI	CTAG	4 cut(s)	327, 477, 669, 738
BfoI	RGCGCY	1 cut(s)	24
BisI	GCNGC	3 cut(s)	169, 375, 1116
BlsI	GCNGC	3 cut(s)	170, 376, 1117
Bme18I	GGWCC	3 cut(s)	124, 290, 829
BmgT120I	GGNCC	5 cut(s)	124, 133, 243, 290, 829
BmiI	GGNNCC	2 cut(s)	244, 830
BmsI	GCATC	1 cut(s)	196
BoxI	GACNNNNGTC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	435
Bpu10I	CCTNAGC	4 cut(s)	59, 218, 503, 768
BpuEI	CTTGAG	1 cut(s)	113
BsaBI	GATNNNNATC	1 cut(s)	676
BsaHI	GRCGYC	1 cut(s)	27
BsaJI	CCNNGG	2 cut(s)	280, 1017
BsaWI	WCCGGW	2 cut(s)	8, 106
Bse118I	RCCGGY	2 cut(s)	8, 17
Bse1I	ACTGG	2 cut(s)	418, 1095
Bse21I	CCTNAGG	1 cut(s)	456
Bse3DI	GCAATG	1 cut(s)	216
Bse8I	GATNNNNATC	1 cut(s)	676
BseDI	CCNNGG	2 cut(s)	280, 1017
BseGI	GGATG	3 cut(s)	211, 598, 1049
BseJI	GATNNNNATC	1 cut(s)	676
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	9 cut(s)	50, 209, 219, 281, 323, 442, 447, 517, 940
BseNI	ACTGG	2 cut(s)	418, 1095
BseXI	GCAGC	2 cut(s)	361, 1102
BseYI	CCCAGC	1 cut(s)	606
Bsh1236I	CGCG	2 cut(s)	168, 1101
BshFI	GGCC	4 cut(s)	78, 134, 171, 245
BshTI	ACCGGT	1 cut(s)	8
BsiSI	CCGG	4 cut(s)	9, 18, 107, 884
BslFI	GGGAC	1 cut(s)	842
BsmAI	GTCTC	4 cut(s)	324, 881, 921, 927
BsmFI	GGGAC	1 cut(s)	842
BsnI	GGCC	4 cut(s)	78, 134, 171, 245
Bsp1286I	GDGCHC	1 cut(s)	1112
Bsp143I	GATC	7 cut(s)	231, 249, 347, 583, 682, 801, 853
Bsp19I	CCATGG	1 cut(s)	1017
BspACI	CCGC	3 cut(s)	33, 168, 531
BspANI	GGCC	4 cut(s)	78, 134, 171, 245
BspCNI	CTCAG	9 cut(s)	51, 210, 220, 280, 322, 441, 448, 516, 939
BspFNI	CGCG	2 cut(s)	168, 1101
BspLI	GGNNCC	2 cut(s)	244, 830
BspPI	GGATC	3 cut(s)	342, 690, 809
BsrDI	GCAATG	1 cut(s)	216
BsrFI	RCCGGY	2 cut(s)	8, 17
BsrI	ACTGG	2 cut(s)	418, 1095
BssAI	RCCGGY	2 cut(s)	8, 17
BssECI	CCNNGG	2 cut(s)	280, 1017
BssMI	GATC	7 cut(s)	231, 249, 347, 583, 682, 801, 853
BssNI	GRCGYC	1 cut(s)	27
BssT1I	CCWWGG	2 cut(s)	280, 1017
Bst4CI	ACNGT	3 cut(s)	567, 640, 662
Bst6I	CTCTTC	1 cut(s)	954
BstACI	GRCGYC	1 cut(s)	27
BstDSI	CCRYGG	1 cut(s)	1017
BstF5I	GGATG	3 cut(s)	211, 598, 1049
BstFNI	CGCG	2 cut(s)	168, 1101
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	7 cut(s)	234, 252, 350, 586, 685, 804, 856
BstMAI	GTCTC	4 cut(s)	324, 881, 921, 927
BstMBI	GATC	7 cut(s)	231, 249, 347, 583, 682, 801, 853
BstMWI	GCNNNNNNNGC	2 cut(s)	371, 1107
BstNSI	RCATGY	1 cut(s)	733
BstPAI	GACNNNNGTC	1 cut(s)	11
BstUI	CGCG	2 cut(s)	168, 1101
BstV1I	GCAGC	2 cut(s)	361, 1102
BstX2I	RGATCY	2 cut(s)	347, 682
BstXI	CCANNNNNNTGG	1 cut(s)	287
BstYI	RGATCY	2 cut(s)	347, 682
Bsu36I	CCTNAGG	1 cut(s)	456
BsuRI	GGCC	4 cut(s)	78, 134, 171, 245
BtgI	CCRYGG	1 cut(s)	1017
BtsCI	GGATG	3 cut(s)	211, 598, 1049
BtsIMutI	CAGTG	2 cut(s)	79, 436
CaiI	CAGNNNCTG	1 cut(s)	565
CfoI	GCGC	1 cut(s)	23
Cfr10I	RCCGGY	2 cut(s)	8, 17
Cfr13I	GGNCC	5 cut(s)	124, 133, 243, 290, 829
CseI	GACGC	2 cut(s)	52, 223
Csp6I	GTAC	1 cut(s)	527
CspAI	ACCGGT	1 cut(s)	8
CspCI	CAANNNNNGTGG	2 cut(s)	55, 90
CviAII	CATG	6 cut(s)	253, 259, 716, 730, 819, 1018
CviQI	GTAC	1 cut(s)	527
DpnI	GATC	7 cut(s)	233, 251, 349, 585, 684, 803, 855
DpnII	GATC	7 cut(s)	231, 249, 347, 583, 682, 801, 853
EaeI	YGGCCR	2 cut(s)	76, 169
Eam1104I	CTCTTC	1 cut(s)	954
EarI	CTCTTC	1 cut(s)	954
Eco130I	CCWWGG	2 cut(s)	280, 1017
Eco24I	GRGCYC	1 cut(s)	1112
Eco32I	GATATC	2 cut(s)	761, 1024
Eco47I	GGWCC	3 cut(s)	124, 290, 829
Eco81I	CCTNAGG	1 cut(s)	456
EcoO109I	RGGNCCY	3 cut(s)	124, 133, 829
EcoRI	GAATTC	1 cut(s)	550
EcoRV	GATATC	2 cut(s)	761, 1024
EcoT14I	CCWWGG	2 cut(s)	280, 1017
EcoT38I	GRGCYC	1 cut(s)	1112
ErhI	CCWWGG	2 cut(s)	280, 1017
FaeI	CATG	6 cut(s)	256, 262, 719, 733, 822, 1021
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FaqI	GGGAC	1 cut(s)	842
FatI	CATG	6 cut(s)	252, 258, 715, 729, 818, 1017
FauI	CCCGC	1 cut(s)	538
Fnu4HI	GCNGC	3 cut(s)	169, 375, 1116
FokI	GGATG	3 cut(s)	218, 605, 1056
FriOI	GRGCYC	1 cut(s)	1112
Fsp4HI	GCNGC	3 cut(s)	169, 375, 1116
FspBI	CTAG	4 cut(s)	327, 477, 669, 738
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	3 cut(s)	169, 375, 1116
GsaI	CCCAGC	1 cut(s)	610
GsuI	CTGGAG	1 cut(s)	435
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	4 cut(s)	78, 134, 171, 245
HapII	CCGG	4 cut(s)	9, 18, 107, 884
HgaI	GACGC	2 cut(s)	52, 223
HhaI	GCGC	1 cut(s)	23
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	6 cut(s)	256, 262, 719, 733, 822, 1021
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HincII	GTYRAC	1 cut(s)	790
HindII	GTYRAC	1 cut(s)	790
HindIII	AAGCTT	2 cut(s)	194, 770
HinfI	GANTC	8 cut(s)	110, 224, 313, 426, 473, 575, 596, 865
HpaII	CCGG	4 cut(s)	9, 18, 107, 884
HphI	GGTGA	3 cut(s)	7, 96, 142
Hpy166II	GTNNAC	1 cut(s)	790
Hpy188I	TCNGA	9 cut(s)	229, 312, 352, 592, 651, 682, 783, 877, 1035
Hpy188III	TCNNGA	4 cut(s)	327, 477, 497, 521
Hpy8I	GTNNAC	1 cut(s)	790
Hpy99I	CGWCG	1 cut(s)	1071
HpyAV	CCTTC	6 cut(s)	146, 400, 439, 963, 1037, 1121
HpyCH4III	ACNGT	3 cut(s)	567, 640, 662
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	7 cut(s)	209, 277, 488, 559, 904, 1000, 1118
HpyF10VI	GCNNNNNNNGC	2 cut(s)	371, 1107
HpySE526I	ACGT	1 cut(s)	27
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	6 cut(s)	256, 262, 719, 733, 822, 1021
HspAI	GCGC	1 cut(s)	21
Kzo9I	GATC	7 cut(s)	231, 249, 347, 583, 682, 801, 853
LmnI	GCTCC	2 cut(s)	35, 323
Lsp1109I	GCAGC	2 cut(s)	361, 1102
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	4 cut(s)	327, 477, 669, 738
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	3 cut(s)	13, 437, 567
MalI	GATC	7 cut(s)	233, 251, 349, 585, 684, 803, 855
MboI	GATC	7 cut(s)	231, 249, 347, 583, 682, 801, 853
MboII	GAAGA	5 cut(s)	131, 860, 941, 948, 1096
MflI	RGATCY	2 cut(s)	347, 682
MhlI	GDGCHC	1 cut(s)	1112
MluCI	AATT	3 cut(s)	550, 752, 898
MlyI	GAGTC	5 cut(s)	104, 233, 322, 420, 590
MmeI	TCCRAC	1 cut(s)	375
MseI	TTAA	3 cut(s)	300, 635, 665
MslI	CAYNNNNRTG	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	33
MspI	CCGG	4 cut(s)	9, 18, 107, 884
MvnI	CGCG	2 cut(s)	168, 1101
MwoI	GCNNNNNNNGC	2 cut(s)	371, 1107
NcoI	CCATGG	1 cut(s)	1017
NdeII	GATC	7 cut(s)	231, 249, 347, 583, 682, 801, 853
NlaIII	CATG	6 cut(s)	256, 262, 719, 733, 822, 1021
NlaIV	GGNNCC	2 cut(s)	244, 830
NmuCI	GTSAC	1 cut(s)	13
NspI	RCATGY	1 cut(s)	733
PciI	ACATGT	1 cut(s)	729
PfeI	GAWTC	3 cut(s)	473, 575, 865
PinAI	ACCGGT	1 cut(s)	8
PkrI	GCNGC	3 cut(s)	170, 376, 1117
PleI	GAGTC	5 cut(s)	104, 232, 321, 420, 590
PpsI	GAGTC	5 cut(s)	104, 232, 321, 420, 590
PpuMI	RGGWCCY	2 cut(s)	124, 829
PscI	ACATGT	1 cut(s)	729
PshAI	GACNNNNGTC	1 cut(s)	11
Psp5II	RGGWCCY	2 cut(s)	124, 829
PspFI	CCCAGC	1 cut(s)	606
PspN4I	GGNNCC	2 cut(s)	244, 830
PspPI	GGNCC	5 cut(s)	124, 133, 243, 290, 829
PspPPI	RGGWCCY	2 cut(s)	124, 829
PstNI	CAGNNNCTG	1 cut(s)	565
PsuI	RGATCY	2 cut(s)	347, 682
RsaI	GTAC	1 cut(s)	528
RsaNI	GTAC	1 cut(s)	527
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	3 cut(s)	300, 635, 665
SatI	GCNGC	3 cut(s)	169, 375, 1116
Sau3AI	GATC	7 cut(s)	231, 249, 347, 583, 682, 801, 853
Sau96I	GGNCC	5 cut(s)	124, 133, 243, 290, 829
SchI	GAGTC	5 cut(s)	104, 233, 322, 420, 590
SduI	GDGCHC	1 cut(s)	1112
SfaNI	GCATC	1 cut(s)	196
SgrAI	CRCCGGYG	1 cut(s)	17
SinI	GGWCC	3 cut(s)	124, 290, 829
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	3 cut(s)	550, 752, 898
SsiI	CCGC	3 cut(s)	33, 168, 531
SspMI	CTAG	4 cut(s)	327, 477, 669, 738
StyI	CCWWGG	2 cut(s)	280, 1017
TaaI	ACNGT	3 cut(s)	567, 640, 662
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	3 cut(s)	113, 863, 1056
TasI	AATT	3 cut(s)	550, 752, 898
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	3 cut(s)	473, 575, 865
Tru1I	TTAA	3 cut(s)	300, 635, 665
Tru9I	TTAA	3 cut(s)	300, 635, 665
TscAI	CASTG	2 cut(s)	79, 436
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	2 cut(s)	374, 1115
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	5 cut(s)	563, 704, 849, 1074, 1140
TspRI	CASTG	2 cut(s)	79, 436
VpaK11BI	GGWCC	3 cut(s)	124, 290, 829
XapI	RAATTY	1 cut(s)	550
XbaI	TCTAGA	2 cut(s)	326, 476
XceI	RCATGY	1 cut(s)	733
XspI	CTAG	4 cut(s)	327, 477, 669, 738
ZraI	GACGTC	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.