Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001822

Physical Location & Seq

Genomic Coordinates Reverse (-)

69710778 .. 69712162

Gene Structure 1385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0512600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTGGCGGCCGTGGAGTAAATCAACGGTTCAGATTCACGACACGACGACATCGCCGACCTCGCCGTTCTCGTTCTCCTCCTTCAAAGACATCCAGAACCTCTGCGCCGAAGAGCCGCCGCAACCCGCCGCCACCGCCAAGAAAGCCTCGGCGATCTTCCACCGCGTCCGAGTCGCCAACTCACTCCTCCGCGCCTGGTCGACTCGCCCCAAAGATGAGCCCTCCCCTACGACGCAACTCGAGCCGTCGTCTATTTCCCTCCCGGGCGGCGAGAGACGCATTGTCGTATACTTCACCAGCCTACGTGTCGTGCGCCGCACGTTCGAGGACTGCAAGGCCGTCCGATCAATACTCCGGGGATTCCGCGTGACGTTGGACGAGCGAGATCTGGCGATGGACCACGCCTTCATTACCGAGCTGCAGCAGATCCTTGGTCAAAGAAAGTTGACCCTCCCCCGGGTTTTCATTGGCGGGAGGTACATTGGTGGGGCCGAGGAGGTGAAACAGCTGCACGAGGCTGGCGAGCTCAAGAAGTTTGTGGAAGGCCTGCCCGTACAGGAACCCGGCGCGTGCGACGCGTGCGGCGGATACAGGTTTTTACTGTGTGACGTTTGTGACGGCAGTCATAAGTTGTATTCTGAGAAAGGGGGCTTCAGGAGTTGTACCTCGTGCAATGAGAATGGTCTGATCAGGTGCTCTTCTTGTTCTTGCGCACCAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

240

Amino Acids

26.66

Weight (kDa)

8.78

Isoelectric Point (pI)

63.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	95 - 161	1.2e-11	Glutaredoxin
GRXCR1-2_C	PF23733	191 - 236	3.9e-19	GRXCR1/2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19860 AT3G19860 AT3G19860
fragaria_vesca	FvH4_1g11770 FvH4_2g02000 FvH4_2g02000 FvH4_2g02000
malus_domestica	MD02G1132000.v1.1 MD05G1115800.v1.1 MD15G1245200.v1.1
prunus_persica	Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.8G160700_v2.0.a1
pyrus_communis	pycom02g10290 pycom05g11010 pycom15g21570
rosa_chinensis	RchiOBHm_Chr2g0099391 RchiOBHm_Chr6g0245181
rosa_laevigata	RLG00000015318 RLG00000016878
rosa_multiflora	Rmu_co8372605.1_g000001 Rmu_sc0001288.1_g000004 Rmu_sc0002487.1_g000008 Rmu_sc0027529.1_g000004
rosa_roxburghii	Rroxscaffold_2G00143110 Rroxscaffold_3G00242190 Rroxscaffold_7G00215380
rosa_rugosa	Rorug02G0079200 Rorug02G0079300 Rorug02G0079400 Rorug05G0512600 Rorug05G0512700 Rorug05G0512800.1
rosa_samantha	Rh2AG129100 Rh2BG132100 Rh2CG132900 Rh2DG133100 Rh6AG027700 Rh6BG023800 Rh6CG022200 Rh6DG022300
rosa_wichuraiana	Rw2G009940 Rw6G002340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	712
AccI	GTMKAC	2 cut(s)	200, 288
AccII	CGCG	5 cut(s)	165, 192, 366, 569, 578
AclWI	GGATC	1 cut(s)	421
AcoI	YGGCCR	1 cut(s)	8
AcuI	CTGAAG	1 cut(s)	637
AfaI	GTAC	3 cut(s)	479, 555, 664
AfiI	CCNNNNNNNGG	2 cut(s)	456, 457
AflIII	ACRYGT	2 cut(s)	304, 576
AgsI	TTSAA	1 cut(s)	85
AhdI	GACNNNNNGTC	1 cut(s)	281
AjnI	CCWGG	1 cut(s)	194
AluBI	AGCT	3 cut(s)	418, 508, 526
AluI	AGCT	3 cut(s)	418, 508, 526
Alw21I	GWGCWC	2 cut(s)	528, 698
Alw26I	GTCTC	1 cut(s)	268
AlwI	GGATC	1 cut(s)	421
Ama87I	CYCGRG	3 cut(s)	239, 262, 456
AoxI	GGCC	4 cut(s)	8, 336, 489, 544
ApeKI	GCWGC	3 cut(s)	418, 421, 508
AspLEI	GCGC	5 cut(s)	107, 194, 315, 569, 713
AspS9I	GGNCC	2 cut(s)	397, 489
AsuC2I	CCSGG	6 cut(s)	263, 264, 356, 457, 458, 564
AsuHPI	GGTGA	2 cut(s)	286, 511
AvaI	CYCGRG	3 cut(s)	239, 262, 456
AvaII	GGWCC	1 cut(s)	397
BaeI	ACNNNNGTAYC	2 cut(s)	469, 502
BanII	GRGCYC	2 cut(s)	222, 528
BauI	CACGAG	2 cut(s)	512, 667
Bbv12I	GWGCWC	2 cut(s)	528, 698
BbvI	GCAGC	3 cut(s)	405, 433, 495
BccI	CCATC	1 cut(s)	388
BceAI	ACGGC	4 cut(s)	49, 229, 323, 634
BciT130I	CCWGG	1 cut(s)	196
BciVI	GTATCC	1 cut(s)	581
BclI	TGATCA	1 cut(s)	687
BcnI	CCSGG	6 cut(s)	263, 264, 356, 457, 458, 564
BcoDI	GTCTC	1 cut(s)	268
BfaI	CTAG	1 cut(s)	721
BfmI	CTRYAG	1 cut(s)	419
BfuI	GTATCC	1 cut(s)	581
BglII	AGATCT	1 cut(s)	385
Bme1390I	CCNGG	7 cut(s)	196, 263, 264, 356, 457, 458, 564
Bme18I	GGWCC	1 cut(s)	397
BmeRI	GACNNNNNGTC	1 cut(s)	281
BmeT110I	CYCGRG	3 cut(s)	239, 262, 456
BmgT120I	GGNCC	2 cut(s)	397, 489
BmiI	GGNNCC	2 cut(s)	490, 561
BmrFI	CCNGG	7 cut(s)	196, 263, 264, 356, 457, 458, 564
BoxI	GACNNNNGTC	1 cut(s)	621
BpuEI	CTTGAG	1 cut(s)	512
BpuMI	CCSGG	6 cut(s)	263, 264, 356, 457, 458, 564
BsaAI	YACGTR	1 cut(s)	305
BsaJI	CCNNGG	8 cut(s)	11, 147, 262, 355, 430, 455, 456, 492
Bsc4I	CCNNNNNNNGG	2 cut(s)	456, 457
Bse3DI	GCAATG	1 cut(s)	679
BseBI	CCWGG	1 cut(s)	196
BseDI	CCNNGG	8 cut(s)	11, 147, 262, 355, 430, 455, 456, 492
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	2 cut(s)	456, 457
BseMI	GCAATG	1 cut(s)	679
BseMII	CTCAG	1 cut(s)	630
BseRI	GAGGAG	3 cut(s)	67, 176, 509
BseX3I	CGGCCG	1 cut(s)	8
BseXI	GCAGC	3 cut(s)	405, 433, 495
BsgI	GTGCAG	1 cut(s)	494
Bsh1236I	CGCG	5 cut(s)	165, 192, 366, 569, 578
Bsh1285I	CGRYCG	1 cut(s)	11
BshFI	GGCC	4 cut(s)	10, 338, 491, 546
BsiEI	CGRYCG	1 cut(s)	11
BsiHKAI	GWGCWC	2 cut(s)	528, 698
BsiHKCI	CYCGRG	3 cut(s)	239, 262, 456
BsiSI	CCGG	4 cut(s)	263, 355, 457, 564
BslI	CCNNNNNNNGG	2 cut(s)	456, 457
BsmAI	GTCTC	1 cut(s)	268
BsmBI	CGTCTC	1 cut(s)	268
BsnI	GGCC	4 cut(s)	10, 338, 491, 546
BsoBI	CYCGRG	3 cut(s)	239, 262, 456
Bsp1286I	GDGCHC	3 cut(s)	222, 528, 698
Bsp143I	GATC	5 cut(s)	153, 344, 385, 426, 687
BspANI	GGCC	4 cut(s)	10, 338, 491, 546
BspCNI	CTCAG	1 cut(s)	631
BspFNI	CGCG	5 cut(s)	165, 192, 366, 569, 578
BspLI	GGNNCC	2 cut(s)	490, 561
BspMAI	CTGCAG	1 cut(s)	423
BspPI	GGATC	1 cut(s)	421
BspQI	GCTCTTC	2 cut(s)	105, 703
BsrDI	GCAATG	1 cut(s)	679
BssECI	CCNNGG	8 cut(s)	11, 147, 262, 355, 430, 455, 456, 492
BssMI	GATC	5 cut(s)	153, 344, 385, 426, 687
BssNAI	GTATAC	1 cut(s)	289
BssSI	CACGAG	2 cut(s)	512, 667
BssT1I	CCWWGG	1 cut(s)	430
Bst1107I	GTATAC	1 cut(s)	289
Bst2BI	CACGAG	2 cut(s)	512, 667
Bst2UI	CCWGG	1 cut(s)	196
Bst4CI	ACNGT	2 cut(s)	28, 603
Bst6I	CTCTTC	2 cut(s)	105, 703
BstBAI	YACGTR	1 cut(s)	305
BstC8I	GCNNGC	5 cut(s)	520, 524, 548, 571, 580
BstDEI	CTNAG	1 cut(s)	639
BstDSI	CCRYGG	1 cut(s)	11
BstF5I	GGATG	1 cut(s)	90
BstFNI	CGCG	5 cut(s)	165, 192, 366, 569, 578
BstHHI	GCGC	5 cut(s)	107, 194, 315, 569, 713
BstKTI	GATC	5 cut(s)	156, 347, 388, 429, 690
BstMAI	GTCTC	1 cut(s)	268
BstMBI	GATC	5 cut(s)	153, 344, 385, 426, 687
BstMCI	CGRYCG	1 cut(s)	11
BstMWI	GCNNNNNNNGC	7 cut(s)	61, 134, 143, 241, 276, 575, 579
BstNI	CCWGG	1 cut(s)	196
BstPAI	GACNNNNGTC	1 cut(s)	621
BstSCI	CCNGG	7 cut(s)	194, 261, 262, 354, 455, 456, 562
BstSFI	CTRYAG	1 cut(s)	419
BstUI	CGCG	5 cut(s)	165, 192, 366, 569, 578
BstV1I	GCAGC	3 cut(s)	405, 433, 495
BstX2I	RGATCY	2 cut(s)	385, 426
BstYI	RGATCY	2 cut(s)	385, 426
BstZ17I	GTATAC	1 cut(s)	289
BstZI	CGGCCG	1 cut(s)	8
BsuI	GTATCC	1 cut(s)	581
BsuRI	GGCC	4 cut(s)	10, 338, 491, 546
BtgI	CCRYGG	1 cut(s)	11
BtgZI	GCGATG	2 cut(s)	36, 407
BtsCI	GGATG	1 cut(s)	90
Cac8I	GCNNGC	5 cut(s)	520, 524, 548, 571, 580
CfoI	GCGC	5 cut(s)	107, 194, 315, 569, 713
Cfr13I	GGNCC	2 cut(s)	397, 489
Cfr9I	CCCGGG	2 cut(s)	262, 456
CseI	GACGC	4 cut(s)	154, 241, 285, 584
Csp6I	GTAC	3 cut(s)	478, 554, 663
CviQI	GTAC	3 cut(s)	478, 554, 663
DdeI	CTNAG	1 cut(s)	639
DpnI	GATC	5 cut(s)	155, 346, 387, 428, 689
DpnII	GATC	5 cut(s)	153, 344, 385, 426, 687
DriI	GACNNNNNGTC	1 cut(s)	281
EaeI	YGGCCR	1 cut(s)	8
EagI	CGGCCG	1 cut(s)	8
Eam1104I	CTCTTC	2 cut(s)	105, 703
Eam1105I	GACNNNNNGTC	1 cut(s)	281
EarI	CTCTTC	2 cut(s)	105, 703
EciI	GGCGGA	1 cut(s)	600
Ecl136II	GAGCTC	1 cut(s)	526
EclXI	CGGCCG	1 cut(s)	8
Eco130I	CCWWGG	1 cut(s)	430
Eco147I	AGGCCT	1 cut(s)	546
Eco24I	GRGCYC	2 cut(s)	222, 528
Eco47I	GGWCC	1 cut(s)	397
Eco52I	CGGCCG	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	526
Eco57I	CTGAAG	1 cut(s)	637
Eco88I	CYCGRG	3 cut(s)	239, 262, 456
EcoICRI	GAGCTC	1 cut(s)	526
EcoRII	CCWGG	1 cut(s)	194
EcoT14I	CCWWGG	1 cut(s)	430
EcoT38I	GRGCYC	2 cut(s)	222, 528
ErhI	CCWWGG	1 cut(s)	430
Esp3I	CGTCTC	1 cut(s)	268
FaiI	YATR	2 cut(s)	289, 627
FauI	CCCGC	2 cut(s)	133, 464
FbaI	TGATCA	1 cut(s)	687
FblI	GTMKAC	2 cut(s)	200, 288
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	2 cut(s)	222, 528
FspBI	CTAG	1 cut(s)	721
FspI	TGCGCA	1 cut(s)	712
GlaI	GCGC	5 cut(s)	106, 193, 314, 568, 712
HaeIII	GGCC	4 cut(s)	10, 338, 491, 546
HapII	CCGG	4 cut(s)	263, 355, 457, 564
HgaI	GACGC	4 cut(s)	154, 241, 285, 584
HhaI	GCGC	5 cut(s)	107, 194, 315, 569, 713
Hin6I	GCGC	5 cut(s)	105, 192, 313, 567, 711
HinP1I	GCGC	5 cut(s)	105, 192, 313, 567, 711
HincII	GTYRAC	2 cut(s)	201, 447
HindII	GTYRAC	2 cut(s)	201, 447
HinfI	GANTC	4 cut(s)	34, 171, 202, 360
HpaII	CCGG	4 cut(s)	263, 355, 457, 564
HphI	GGTGA	2 cut(s)	286, 511
Hpy166II	GTNNAC	3 cut(s)	201, 289, 447
Hpy188I	TCNGA	5 cut(s)	33, 170, 344, 640, 687
Hpy188III	TCNNGA	4 cut(s)	38, 94, 529, 655
Hpy8I	GTNNAC	3 cut(s)	201, 289, 447
Hpy99I	CGWCG	4 cut(s)	49, 235, 250, 578
HpyAV	CCTTC	3 cut(s)	91, 415, 536
HpyCH4III	ACNGT	2 cut(s)	28, 603
HpyCH4IV	ACGT	4 cut(s)	304, 320, 371, 609
HpyCH4V	TGCA	4 cut(s)	333, 421, 511, 672
HpyF10VI	GCNNNNNNNGC	7 cut(s)	61, 134, 143, 241, 276, 575, 579
HpyF3I	CTNAG	1 cut(s)	639
HpySE526I	ACGT	4 cut(s)	304, 320, 371, 609
HspAI	GCGC	5 cut(s)	105, 192, 313, 567, 711
Ksp22I	TGATCA	1 cut(s)	687
Kzo9I	GATC	5 cut(s)	153, 344, 385, 426, 687
LguI	GCTCTTC	2 cut(s)	105, 703
Lsp1109I	GCAGC	3 cut(s)	405, 433, 495
MaeI	CTAG	1 cut(s)	721
MaeII	ACGT	4 cut(s)	304, 320, 371, 609
MaeIII	GTNAC	3 cut(s)	367, 605, 614
MalI	GATC	5 cut(s)	155, 346, 387, 428, 689
MboI	GATC	5 cut(s)	153, 344, 385, 426, 687
MboII	GAAGA	3 cut(s)	122, 148, 690
MflI	RGATCY	2 cut(s)	385, 426
MhlI	GDGCHC	3 cut(s)	222, 528, 698
MluI	ACGCGT	1 cut(s)	576
MlyI	GAGTC	2 cut(s)	180, 196
MmeI	TCCRAC	1 cut(s)	354
MspA1I	CMGCKG	1 cut(s)	508
MspI	CCGG	4 cut(s)	263, 355, 457, 564
MspR9I	CCNGG	7 cut(s)	196, 263, 264, 356, 457, 458, 564
MvaI	CCWGG	1 cut(s)	196
MvnI	CGCG	5 cut(s)	165, 192, 366, 569, 578
MwoI	GCNNNNNNNGC	7 cut(s)	61, 134, 143, 241, 276, 575, 579
NciI	CCSGG	6 cut(s)	263, 264, 356, 457, 458, 564
NdeII	GATC	5 cut(s)	153, 344, 385, 426, 687
NlaIV	GGNNCC	2 cut(s)	490, 561
NmeAIII	GCCGAG	2 cut(s)	128, 517
NmuCI	GTSAC	3 cut(s)	367, 605, 614
NsbI	TGCGCA	1 cut(s)	712
PaeR7I	CTCGAG	1 cut(s)	239
PceI	AGGCCT	1 cut(s)	546
PciSI	GCTCTTC	2 cut(s)	105, 703
PcsI	WCGNNNNNNNCGW	3 cut(s)	53, 68, 519
PfeI	GAWTC	2 cut(s)	34, 360
PleI	GAGTC	2 cut(s)	179, 196
PpsI	GAGTC	2 cut(s)	179, 196
Ppu21I	YACGTR	1 cut(s)	305
PshAI	GACNNNNGTC	1 cut(s)	621
Psp124BI	GAGCTC	1 cut(s)	528
Psp6I	CCWGG	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	194
PspN4I	GGNNCC	2 cut(s)	490, 561
PspPI	GGNCC	2 cut(s)	397, 489
PspXI	VCTCGAGB	1 cut(s)	239
PstI	CTGCAG	1 cut(s)	423
PsuI	RGATCY	2 cut(s)	385, 426
PvuII	CAGCTG	1 cut(s)	508
RsaI	GTAC	3 cut(s)	479, 555, 664
RsaNI	GTAC	3 cut(s)	478, 554, 663
SacI	GAGCTC	1 cut(s)	528
SalI	GTCGAC	1 cut(s)	199
SapI	GCTCTTC	2 cut(s)	105, 703
Sau3AI	GATC	5 cut(s)	153, 344, 385, 426, 687
Sau96I	GGNCC	2 cut(s)	397, 489
SchI	GAGTC	2 cut(s)	180, 196
ScrFI	CCNGG	7 cut(s)	196, 263, 264, 356, 457, 458, 564
SduI	GDGCHC	3 cut(s)	222, 528, 698
SfcI	CTRYAG	1 cut(s)	419
Sfr274I	CTCGAG	1 cut(s)	239
SinI	GGWCC	1 cut(s)	397
SlaI	CTCGAG	1 cut(s)	239
SmaI	CCCGGG	2 cut(s)	264, 458
SmlI	CTYRAG	2 cut(s)	239, 527
SmoI	CTYRAG	2 cut(s)	239, 527
SseBI	AGGCCT	1 cut(s)	546
SspMI	CTAG	1 cut(s)	721
SstI	GAGCTC	1 cut(s)	528
StuI	AGGCCT	1 cut(s)	546
StyD4I	CCNGG	7 cut(s)	194, 261, 262, 354, 455, 456, 562
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	2 cut(s)	28, 603
TaiI	ACGT	4 cut(s)	307, 323, 374, 612
TaqI	TCGA	3 cut(s)	200, 240, 324
TauI	GCSGC	7 cut(s)	10, 118, 121, 131, 270, 318, 585
TfiI	GAWTC	2 cut(s)	34, 360
TseFI	GTSAC	3 cut(s)	367, 605, 614
TseI	GCWGC	3 cut(s)	418, 421, 508
Tsp45I	GTSAC	3 cut(s)	367, 605, 614
TspDTI	ATGAA	2 cut(s)	397, 454
TspMI	CCCGGG	2 cut(s)	262, 456
VpaK11BI	GGWCC	1 cut(s)	397
XhoI	CTCGAG	1 cut(s)	239
XmaI	CCCGGG	2 cut(s)	262, 456
XmiI	GTMKAC	2 cut(s)	200, 288
XspI	CTAG	1 cut(s)	721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.