Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001822

Physical Location & Seq

Genomic Coordinates Reverse (-)

17146221 .. 17148951

Gene Structure 2731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G168500.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGATCAATGGAACGGTGATGATTTCTCAGCTGCTTCAGCTCCTTCTTCTGCTCAGCCTCTTCTTTTGCCCTCCTCCAATCGCTCCCACAACTCCAACTCTGAGTCCAGACAAAGGCCTGATGTGGAGACGAAGGACCCAATTGTTGCAAGAAAAGTTCAGAAAGCAGACCGTGAAAAGTTGAGGAGGGATCGACTCAATGAGCACTTTCTTGAGTTGGGCAACACATTAGATCCAGATAGGCCCAAGAACGATAAGGCAACCATCCTTACAGACACAATTCAAATGTTGAAGGATTTAACTGCTGATGTGGGCAAACTAAAGGCCGAGTGTGCCGCGCTTACTGATGAATCCCGTGAGCTAACACAGGAGAAGAATGAGCTAAGAGAAGAGAAGGCATCTTTGAAATCCGATATTGAGAATCTAAATGTTCAGTATCAGCAAAGACTGAGAGTTATGTTTCCATGGGCTGCCATGGATCCTTCTGTTGTTATGGCTCCACAATACTCATATCCAATGCCTGTAGCTGTTCCTCCCGGCTCAATTCCCATGCACCCGTCACTTCAGCCATTTCCTTACTTTCAAACTCAAACTCCTGCTGCTATTCCCAATCCCTGTTCAACTTTTGTCCCATATCAAGCTCCTGCCAATCCTCCTGTAGAACAGCCGGCACCTCAGTATGCATCTGTTTCCCACCTTTCAAGCAAACAAGATTCCAGAAGCAAGTCATCAGATATGCAAAGGGGGAGCAATGCTGAAAGATGTGATGACTCCAATGATGTGGCAACCGACCTTGAACTTAAGATGCCAGGATCTTCGACACAACAGGATTCATCTTCTGGAGGTAGGAAGTCCAAGCAATCACAGAGGAAGGATAGGGTTGTTACAGATGGAAGCTCATCAAGTAGGTATTCTTCATCTCAAGGTCTTCAGGATAACTCCTCCAACAGCGTAGGTGACGTCCCCAAGTCTAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

327

Amino Acids

35.97

Weight (kDa)

5.91

Isoelectric Point (pI)

60.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19860 AT3G19860 AT3G19860
fragaria_vesca	FvH4_1g11770 FvH4_2g02000 FvH4_2g02000 FvH4_2g02000
malus_domestica	MD02G1132000.v1.1 MD05G1115800.v1.1 MD15G1245200.v1.1
prunus_persica	Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.8G160700_v2.0.a1
pyrus_communis	pycom02g10290 pycom05g11010 pycom15g21570
rosa_chinensis	RchiOBHm_Chr2g0099391 RchiOBHm_Chr6g0245181
rosa_laevigata	RLG00000015318 RLG00000016878
rosa_multiflora	Rmu_co8372605.1_g000001 Rmu_sc0001288.1_g000004 Rmu_sc0002487.1_g000008 Rmu_sc0027529.1_g000004
rosa_roxburghii	Rroxscaffold_2G00143110 Rroxscaffold_3G00242190 Rroxscaffold_7G00215380
rosa_rugosa	Rorug02G0079200 Rorug02G0079300 Rorug02G0079400 Rorug05G0512600 Rorug05G0512700 Rorug05G0512800.1
rosa_samantha	Rh2AG129100 Rh2BG132100 Rh2CG132900 Rh2DG133100 Rh6AG027700 Rh6BG023800 Rh6CG022200 Rh6DG022300
rosa_wichuraiana	Rw2G009940 Rw6G002340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	963
AccB1I	GGYRCC	1 cut(s)	670
AccII	CGCG	1 cut(s)	338
AciI	CCGC	1 cut(s)	336
AclWI	GGATC	6 cut(s)	12, 198, 227, 473, 486, 820
AcuI	CTGAAG	3 cut(s)	21, 548, 914
AcyI	GRCGYC	1 cut(s)	960
AfiI	CCNNNNNNNGG	1 cut(s)	114
AflII	CTTAAG	1 cut(s)	800
AgsI	TTSAA	7 cut(s)	284, 292, 406, 584, 621, 702, 797
AjnI	CCWGG	1 cut(s)	808
AluBI	AGCT	7 cut(s)	32, 41, 361, 382, 527, 641, 897
AluI	AGCT	7 cut(s)	32, 41, 361, 382, 527, 641, 897
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	6 cut(s)	12, 198, 227, 473, 486, 820
AoxI	GGCC	3 cut(s)	116, 242, 324
ApeKI	GCWGC	3 cut(s)	32, 470, 599
AspLEI	GCGC	1 cut(s)	340
AspS9I	GGNCC	2 cut(s)	136, 243
AsuC2I	CCSGG	1 cut(s)	537
AsuHPI	GGTGA	2 cut(s)	29, 968
AvaII	GGWCC	1 cut(s)	136
BamHI	GGATCC	1 cut(s)	478
BanI	GGYRCC	1 cut(s)	670
BarI	GAAGNNNNNNTAC	2 cut(s)	898, 930
BbsI	GAAGAC	1 cut(s)	920
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	3 cut(s)	19, 457, 586
BccI	CCATC	2 cut(s)	272, 884
BciT130I	CCWGG	1 cut(s)	810
BcnI	CCSGG	1 cut(s)	537
BcoDI	GTCTC	1 cut(s)	122
BfmI	CTRYAG	2 cut(s)	522, 657
BfrI	CTTAAG	1 cut(s)	800
BisI	GCNGC	4 cut(s)	33, 336, 471, 600
BlpI	GCTNAGC	1 cut(s)	54
BlsI	GCNGC	4 cut(s)	34, 337, 472, 601
Bme1390I	CCNGG	2 cut(s)	537, 810
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	2 cut(s)	136, 243
BmiI	GGNNCC	4 cut(s)	138, 480, 498, 672
BmrFI	CCNGG	2 cut(s)	537, 810
BmsI	GCATC	3 cut(s)	407, 692, 795
BpiI	GAAGAC	1 cut(s)	920
BpmI	CTGGAG	1 cut(s)	861
Bpu1102I	GCTNAGC	1 cut(s)	54
BpuEI	CTTGAG	2 cut(s)	233, 906
BpuMI	CCSGG	1 cut(s)	537
BsaHI	GRCGYC	1 cut(s)	960
BsaJI	CCNNGG	2 cut(s)	464, 474
BsaXI	ACNNNNNCTCC	2 cut(s)	577, 607
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
Bse118I	RCCGGY	1 cut(s)	667
Bse3DI	GCAATG	1 cut(s)	757
BseBI	CCWGG	1 cut(s)	810
BseDI	CCNNGG	2 cut(s)	464, 474
BseGI	GGATG	1 cut(s)	264
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseMI	GCAATG	1 cut(s)	757
BseMII	CTCAG	5 cut(s)	42, 68, 93, 440, 689
BseRI	GAGGAG	3 cut(s)	64, 199, 931
BseXI	GCAGC	3 cut(s)	19, 457, 586
Bsh1236I	CGCG	1 cut(s)	338
BshFI	GGCC	3 cut(s)	118, 244, 326
BshNI	GGYRCC	1 cut(s)	670
BsiHKAI	GWGCWC	1 cut(s)	207
BsiSI	CCGG	2 cut(s)	537, 668
BslFI	GGGAC	2 cut(s)	614, 947
BslI	CCNNNNNNNGG	1 cut(s)	114
BsmAI	GTCTC	1 cut(s)	122
BsmBI	CGTCTC	1 cut(s)	122
BsmFI	GGGAC	2 cut(s)	614, 947
BsnI	GGCC	3 cut(s)	118, 244, 326
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	5 cut(s)	4, 190, 232, 478, 812
Bsp1720I	GCTNAGC	1 cut(s)	54
Bsp19I	CCATGG	2 cut(s)	464, 474
BspACI	CCGC	1 cut(s)	336
BspANI	GGCC	3 cut(s)	118, 244, 326
BspCNI	CTCAG	5 cut(s)	41, 67, 94, 441, 688
BspFNI	CGCG	1 cut(s)	338
BspLI	GGNNCC	4 cut(s)	138, 480, 498, 672
BspPI	GGATC	6 cut(s)	12, 198, 227, 473, 486, 820
BspT107I	GGYRCC	1 cut(s)	670
BspTI	CTTAAG	1 cut(s)	800
BsrDI	GCAATG	1 cut(s)	757
BsrFI	RCCGGY	1 cut(s)	667
BssAI	RCCGGY	1 cut(s)	667
BssECI	CCNNGG	2 cut(s)	464, 474
BssMI	GATC	5 cut(s)	4, 190, 232, 478, 812
BssNI	GRCGYC	1 cut(s)	960
BssT1I	CCWWGG	2 cut(s)	464, 474
Bst2UI	CCWGG	1 cut(s)	810
Bst4CI	ACNGT	2 cut(s)	17, 173
Bst6I	CTCTTC	2 cut(s)	66, 384
BstACI	GRCGYC	1 cut(s)	960
BstAFI	CTTAAG	1 cut(s)	800
BstC8I	GCNNGC	1 cut(s)	669
BstDEI	CTNAG	6 cut(s)	28, 54, 102, 383, 449, 675
BstDSI	CCRYGG	2 cut(s)	464, 474
BstF5I	GGATG	1 cut(s)	264
BstFNI	CGCG	1 cut(s)	338
BstHHI	GCGC	1 cut(s)	340
BstKTI	GATC	5 cut(s)	7, 193, 235, 481, 815
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	5 cut(s)	4, 190, 232, 478, 812
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 332
BstNI	CCWGG	1 cut(s)	810
BstSCI	CCNGG	2 cut(s)	535, 808
BstSFI	CTRYAG	2 cut(s)	522, 657
BstUI	CGCG	1 cut(s)	338
BstV1I	GCAGC	3 cut(s)	19, 457, 586
BstV2I	GAAGAC	1 cut(s)	920
BstX2I	RGATCY	3 cut(s)	232, 478, 812
BstXI	CCANNNNNNTGG	1 cut(s)	781
BstYI	RGATCY	3 cut(s)	232, 478, 812
BsuRI	GGCC	3 cut(s)	118, 244, 326
BtgI	CCRYGG	2 cut(s)	464, 474
BtsCI	GGATG	1 cut(s)	264
Cac8I	GCNNGC	1 cut(s)	669
CfoI	GCGC	1 cut(s)	340
Cfr10I	RCCGGY	1 cut(s)	667
Cfr13I	GGNCC	2 cut(s)	136, 243
CviAII	CATG	3 cut(s)	465, 475, 550
DdeI	CTNAG	6 cut(s)	28, 54, 102, 383, 449, 675
DpnI	GATC	5 cut(s)	6, 192, 234, 480, 814
DpnII	GATC	5 cut(s)	4, 190, 232, 478, 812
Eam1104I	CTCTTC	2 cut(s)	66, 384
EarI	CTCTTC	2 cut(s)	66, 384
Eco130I	CCWWGG	2 cut(s)	464, 474
Eco147I	AGGCCT	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	136
Eco57I	CTGAAG	3 cut(s)	21, 548, 914
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	808
EcoT14I	CCWWGG	2 cut(s)	464, 474
EcoT22I	ATGCAT	1 cut(s)	685
ErhI	CCWWGG	2 cut(s)	464, 474
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	3 cut(s)	468, 478, 553
FaiI	YATR	9 cut(s)	458, 466, 476, 494, 511, 551, 634, 681, 737
FaqI	GGGAC	2 cut(s)	614, 947
FatI	CATG	3 cut(s)	464, 474, 549
Fnu4HI	GCNGC	4 cut(s)	33, 336, 471, 600
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	4 cut(s)	33, 336, 471, 600
GlaI	GCGC	1 cut(s)	339
GluI	GCNGC	4 cut(s)	33, 336, 471, 600
GsuI	CTGGAG	1 cut(s)	861
HaeIII	GGCC	3 cut(s)	118, 244, 326
HapII	CCGG	2 cut(s)	537, 668
HhaI	GCGC	1 cut(s)	340
Hin1I	GRCGYC	1 cut(s)	960
Hin1II	CATG	3 cut(s)	468, 478, 553
Hin6I	GCGC	1 cut(s)	338
HinP1I	GCGC	1 cut(s)	338
HinfI	GANTC	7 cut(s)	104, 195, 350, 421, 713, 770, 830
HpaII	CCGG	2 cut(s)	537, 668
HphI	GGTGA	2 cut(s)	29, 968
Hpy188I	TCNGA	4 cut(s)	103, 162, 412, 733
Hpy188III	TCNNGA	6 cut(s)	108, 212, 236, 717, 840, 932
HpyAV	CCTTC	6 cut(s)	54, 127, 286, 388, 492, 865
HpyCH4III	ACNGT	2 cut(s)	17, 173
HpyCH4IV	ACGT	1 cut(s)	960
HpyCH4V	TGCA	4 cut(s)	149, 553, 683, 739
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 332
HpyF3I	CTNAG	6 cut(s)	28, 54, 102, 383, 449, 675
HpySE526I	ACGT	1 cut(s)	960
Hsp92I	GRCGYC	1 cut(s)	960
Hsp92II	CATG	3 cut(s)	468, 478, 553
HspAI	GCGC	1 cut(s)	338
KroI	GCCGGC	1 cut(s)	667
KroNI	GCCGGC	1 cut(s)	669
Kzo9I	GATC	5 cut(s)	4, 190, 232, 478, 812
LmnI	GCTCC	5 cut(s)	46, 89, 502, 646, 747
Lsp1109I	GCAGC	3 cut(s)	19, 457, 586
LweI	GCATC	3 cut(s)	407, 692, 795
MaeII	ACGT	1 cut(s)	960
MaeIII	GTNAC	3 cut(s)	558, 883, 956
MalI	GATC	5 cut(s)	6, 192, 234, 480, 814
MboI	GATC	5 cut(s)	4, 190, 232, 478, 812
MboII	GAAGA	8 cut(s)	39, 53, 385, 401, 807, 828, 906, 920
MfeI	CAATTG	1 cut(s)	141
MflI	RGATCY	3 cut(s)	232, 478, 812
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	3 cut(s)	141, 279, 543
MlyI	GAGTC	3 cut(s)	113, 189, 764
MmeI	TCCRAC	2 cut(s)	120, 969
Mph1103I	ATGCAT	1 cut(s)	685
MroNI	GCCGGC	1 cut(s)	667
MseI	TTAA	2 cut(s)	299, 801
MspA1I	CMGCKG	1 cut(s)	32
MspCI	CTTAAG	1 cut(s)	800
MspI	CCGG	2 cut(s)	537, 668
MspR9I	CCNGG	2 cut(s)	537, 810
MunI	CAATTG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	810
MvnI	CGCG	1 cut(s)	338
MwoI	GCNNNNNNNGC	2 cut(s)	38, 332
NaeI	GCCGGC	1 cut(s)	669
NciI	CCSGG	1 cut(s)	537
NcoI	CCATGG	2 cut(s)	464, 474
NdeII	GATC	5 cut(s)	4, 190, 232, 478, 812
NgoMIV	GCCGGC	1 cut(s)	667
NlaIII	CATG	3 cut(s)	468, 478, 553
NlaIV	GGNNCC	4 cut(s)	138, 480, 498, 672
NmeAIII	GCCGAG	1 cut(s)	352
NmuCI	GTSAC	2 cut(s)	558, 956
NsiI	ATGCAT	1 cut(s)	685
PceI	AGGCCT	1 cut(s)	118
PdiI	GCCGGC	1 cut(s)	669
PfeI	GAWTC	4 cut(s)	350, 421, 713, 830
PkrI	GCNGC	4 cut(s)	34, 337, 472, 601
PleI	GAGTC	3 cut(s)	112, 189, 764
PpsI	GAGTC	3 cut(s)	112, 189, 764
PpuMI	RGGWCCY	1 cut(s)	136
Psp5II	RGGWCCY	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	808
PspGI	CCWGG	1 cut(s)	808
PspN4I	GGNNCC	4 cut(s)	138, 480, 498, 672
PspPI	GGNCC	2 cut(s)	136, 243
PspPPI	RGGWCCY	1 cut(s)	136
PsuI	RGATCY	3 cut(s)	232, 478, 812
PvuII	CAGCTG	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	299, 801
SatI	GCNGC	4 cut(s)	33, 336, 471, 600
Sau3AI	GATC	5 cut(s)	4, 190, 232, 478, 812
Sau96I	GGNCC	2 cut(s)	136, 243
SchI	GAGTC	3 cut(s)	113, 189, 764
ScrFI	CCNGG	2 cut(s)	537, 810
SduI	GDGCHC	1 cut(s)	207
SfaNI	GCATC	3 cut(s)	407, 692, 795
SfcI	CTRYAG	2 cut(s)	522, 657
SinI	GGWCC	1 cut(s)	136
SmlI	CTYRAG	3 cut(s)	212, 800, 921
SmoI	CTYRAG	3 cut(s)	212, 800, 921
Sse9I	AATT	3 cut(s)	141, 279, 543
SseBI	AGGCCT	1 cut(s)	118
SsiI	CCGC	1 cut(s)	336
StuI	AGGCCT	1 cut(s)	118
StyD4I	CCNGG	2 cut(s)	535, 808
StyI	CCWWGG	2 cut(s)	464, 474
TaaI	ACNGT	2 cut(s)	17, 173
TaiI	ACGT	1 cut(s)	963
TaqI	TCGA	2 cut(s)	193, 818
TasI	AATT	3 cut(s)	141, 279, 543
TauI	GCSGC	1 cut(s)	338
TfiI	GAWTC	4 cut(s)	350, 421, 713, 830
Tru1I	TTAA	2 cut(s)	299, 801
Tru9I	TTAA	2 cut(s)	299, 801
TseFI	GTSAC	2 cut(s)	558, 956
TseI	GCWGC	3 cut(s)	32, 470, 599
Tsp45I	GTSAC	2 cut(s)	558, 956
TspDTI	ATGAA	3 cut(s)	363, 822, 906
Vha464I	CTTAAG	1 cut(s)	800
VpaK11BI	GGWCC	1 cut(s)	136
ZraI	GACGTC	1 cut(s)	961
Zsp2I	ATGCAT	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.