Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001822

Physical Location & Seq

Genomic Coordinates Forward (+)

6442675 .. 6445140

Gene Structure 2466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g11770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGATCAATGGAAAGGCGATCACTTCGCAGGTGTTTCAGCTCCTTCTTCAGCCCAGCATCTTCCTCTTCCTCCTGTTAATTGTGATAGGAAAAGGGCTGATGTGGAGACCAAGGACCCAGTTTCTGCAAGGAAAGTTCAGAAAGCTGACCGCGAAAAATTGAGGAGGGATAAGCTGAACGAGCATTTTCTGGAGTTGGGAAACACATTAGATCCAGATAGGCCAAAGAATGACAAGGCCACTATCCTTACAGACACAATTCAAGTGTTGAAGGATTTAACATCTGATGTGAACAAATTAAAGTCTGAGTGTGCAACACTCAATGATGAATCTCGTGAGCTGACATTGGAGAAGAATGAGCTAAGAGAAGAGAAGGCATCTTTAAAATCTGATATTGAAAATCTCAATGCTCAATATCAGCAAAGAGTGAGGGTTATGTTTCCATGGGGAGCTATGGATCCTTCTGTCGTGATGGCTCCACCTTATTCATATCCAATGCCTGTAGCTGTTCCGCCTGGTCCAATTCCCATGCACCCATCGCTTCAGCCCTTCCCTTACTATCAAACTCAAAATCCAGCAACTGTTCCTAATCCTTGCCCAACTTTTGTCTCGTATCCAACTCCTATCAATCCTGCAGTAGAGCAGCCATTGGCCCAACCCCAATATGCATCTGTTTCACATGTTTCAAGTAAACAAGATTCCAAAAGCAAGTCATCAGATCATCAAAGGGGAGGCAATGCGGAAAGATGTGATGACTCCAATGAGGTGGCAACAGAACTTGTACTTAAGATGCCTGGATCTTCAGCACATCAGGAGTCATGTTGTGGGGCTAAGAAGGGCAAACAATCACAAAGGAAAGATAGGAACATTACAGATGGAAGCTCTTCGAGTAGGTATTCTTCATCTCAAGTTGTTCAGGAGAGTTCCTCTAACAGCGTAGGTGATATCCCCAAGACTAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

322

Amino Acids

35.48

Weight (kDa)

7.04

Isoelectric Point (pI)

55.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_IRO3	PF23177	43 - 118	3.6e-21	Iron-related transcription factor 3 bHLH domain
HLH	PF00010	44 - 94	3e-09	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19860 AT3G19860 AT3G19860
fragaria_vesca	FvH4_1g11770 FvH4_2g02000 FvH4_2g02000 FvH4_2g02000
malus_domestica	MD02G1132000.v1.1 MD05G1115800.v1.1 MD15G1245200.v1.1
prunus_persica	Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.8G160700_v2.0.a1
pyrus_communis	pycom02g10290 pycom05g11010 pycom15g21570
rosa_chinensis	RchiOBHm_Chr2g0099391 RchiOBHm_Chr6g0245181
rosa_laevigata	RLG00000015318 RLG00000016878
rosa_multiflora	Rmu_co8372605.1_g000001 Rmu_sc0001288.1_g000004 Rmu_sc0002487.1_g000008 Rmu_sc0027529.1_g000004
rosa_roxburghii	Rroxscaffold_2G00143110 Rroxscaffold_3G00242190 Rroxscaffold_7G00215380
rosa_rugosa	Rorug02G0079200 Rorug02G0079300 Rorug02G0079400 Rorug05G0512600 Rorug05G0512700 Rorug05G0512800.1
rosa_samantha	Rh2AG129100 Rh2BG132100 Rh2CG132900 Rh2DG133100 Rh6AG027700 Rh6BG023800 Rh6CG022200 Rh6DG022300
rosa_wichuraiana	Rw2G009940 Rw6G002340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	20
Acc36I	ACCTGC	1 cut(s)	20
AccII	CGCG	1 cut(s)	153
AciI	CCGC	3 cut(s)	151, 512, 740
AclWI	GGATC	5 cut(s)	12, 206, 452, 465, 805
AcuI	CTGAAG	3 cut(s)	33, 527, 786
AfaI	GTAC	1 cut(s)	783
AflII	CTTAAG	1 cut(s)	785
AflIII	ACRYGT	1 cut(s)	679
AgsI	TTSAA	4 cut(s)	263, 271, 398, 687
AjnI	CCWGG	2 cut(s)	514, 793
AluBI	AGCT	8 cut(s)	41, 146, 175, 340, 361, 452, 506, 882
AluI	AGCT	8 cut(s)	41, 146, 175, 340, 361, 452, 506, 882
Alw26I	GTCTC	2 cut(s)	101, 613
AlwI	GGATC	5 cut(s)	12, 206, 452, 465, 805
AlwNI	CAGNNNCTG	2 cut(s)	125, 581
AoxI	GGCC	3 cut(s)	221, 237, 651
ApeKI	GCWGC	1 cut(s)	643
Asp700I	GAANNNNTTC	1 cut(s)	883
AspS9I	GGNCC	3 cut(s)	115, 518, 652
AsuHPI	GGTGA	1 cut(s)	953
AvaII	GGWCC	2 cut(s)	115, 518
BamHI	GGATCC	1 cut(s)	457
BarI	GAAGNNNNNNTAC	2 cut(s)	883, 915
BauI	CACGAG	1 cut(s)	333
BbvI	GCAGC	1 cut(s)	655
BccI	CCATC	3 cut(s)	466, 544, 869
BciT130I	CCWGG	2 cut(s)	516, 795
BciVI	GTATCC	1 cut(s)	624
BcoDI	GTCTC	2 cut(s)	101, 613
BfmI	CTRYAG	2 cut(s)	501, 633
BfrI	CTTAAG	1 cut(s)	785
BfuAI	ACCTGC	1 cut(s)	20
BfuI	GTATCC	1 cut(s)	624
BisI	GCNGC	1 cut(s)	644
BlsI	GCNGC	1 cut(s)	645
Bme1390I	CCNGG	2 cut(s)	516, 795
Bme18I	GGWCC	2 cut(s)	115, 518
BmgT120I	GGNCC	3 cut(s)	115, 518, 652
BmiI	GGNNCC	3 cut(s)	117, 459, 477
BmrFI	CCNGG	2 cut(s)	516, 795
BmrI	ACTGGG	1 cut(s)	113
BmsI	GCATC	4 cut(s)	67, 386, 677, 780
BmuI	ACTGGG	1 cut(s)	113
BplI	GAGNNNNNCTC	2 cut(s)	911, 943
BpmI	CTGGAG	1 cut(s)	212
BpuEI	CTTGAG	1 cut(s)	891
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	111, 443
Bse1I	ACTGG	1 cut(s)	119
Bse3DI	GCAATG	1 cut(s)	742
BseBI	CCWGG	2 cut(s)	516, 795
BseDI	CCNNGG	2 cut(s)	111, 443
BseMI	GCAATG	1 cut(s)	742
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	119
BseRI	GAGGAG	1 cut(s)	178
BseXI	GCAGC	1 cut(s)	655
BseYI	CCCAGC	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	153
BshFI	GGCC	3 cut(s)	223, 239, 653
BsmAI	GTCTC	2 cut(s)	101, 613
BsnI	GGCC	3 cut(s)	223, 239, 653
Bso31I	GGTCTC	1 cut(s)	101
Bsp143I	GATC	6 cut(s)	4, 19, 211, 457, 718, 797
Bsp19I	CCATGG	1 cut(s)	443
BspACI	CCGC	3 cut(s)	151, 512, 740
BspANI	GGCC	3 cut(s)	223, 239, 653
BspCNI	CTCAG	1 cut(s)	298
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	3 cut(s)	117, 459, 477
BspMAI	CTGCAG	1 cut(s)	637
BspMI	ACCTGC	1 cut(s)	20
BspPI	GGATC	5 cut(s)	12, 206, 452, 465, 805
BspQI	GCTCTTC	1 cut(s)	889
BspTI	CTTAAG	1 cut(s)	785
BspTNI	GGTCTC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	742
BsrI	ACTGG	1 cut(s)	119
BssECI	CCNNGG	2 cut(s)	111, 443
BssMI	GATC	6 cut(s)	4, 19, 211, 457, 718, 797
BssSI	CACGAG	1 cut(s)	333
BssT1I	CCWWGG	2 cut(s)	111, 443
Bst2BI	CACGAG	1 cut(s)	333
Bst2UI	CCWGG	2 cut(s)	516, 795
Bst4CI	ACNGT	1 cut(s)	583
Bst6I	CTCTTC	3 cut(s)	72, 363, 889
BstAFI	CTTAAG	1 cut(s)	785
BstDEI	CTNAG	3 cut(s)	306, 362, 831
BstDSI	CCRYGG	1 cut(s)	443
BstFNI	CGCG	1 cut(s)	153
BstKTI	GATC	6 cut(s)	7, 22, 214, 460, 721, 800
BstMAI	GTCTC	2 cut(s)	101, 613
BstMBI	GATC	6 cut(s)	4, 19, 211, 457, 718, 797
BstMWI	GCNNNNNNNGC	2 cut(s)	181, 538
BstNI	CCWGG	2 cut(s)	516, 795
BstNSI	RCATGY	1 cut(s)	683
BstSCI	CCNGG	2 cut(s)	514, 793
BstSFI	CTRYAG	2 cut(s)	501, 633
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	655
BstX2I	RGATCY	3 cut(s)	211, 457, 797
BstXI	CCANNNNNNTGG	1 cut(s)	766
BstYI	RGATCY	3 cut(s)	211, 457, 797
BsuI	GTATCC	1 cut(s)	624
BsuRI	GGCC	3 cut(s)	223, 239, 653
BtgI	CCRYGG	1 cut(s)	443
BtgZI	GCGATG	1 cut(s)	522
BveI	ACCTGC	1 cut(s)	20
CaiI	CAGNNNCTG	2 cut(s)	125, 581
Cfr13I	GGNCC	3 cut(s)	115, 518, 652
Csp6I	GTAC	1 cut(s)	782
CviAII	CATG	4 cut(s)	444, 529, 680, 819
CviQI	GTAC	1 cut(s)	782
DdeI	CTNAG	3 cut(s)	306, 362, 831
DpnI	GATC	6 cut(s)	6, 21, 213, 459, 720, 799
DpnII	GATC	6 cut(s)	4, 19, 211, 457, 718, 797
DraI	TTTAAA	1 cut(s)	384
Eam1104I	CTCTTC	3 cut(s)	72, 363, 889
EarI	CTCTTC	3 cut(s)	72, 363, 889
EciI	GGCGGA	1 cut(s)	501
Eco130I	CCWWGG	2 cut(s)	111, 443
Eco31I	GGTCTC	1 cut(s)	101
Eco32I	GATATC	1 cut(s)	946
Eco47I	GGWCC	2 cut(s)	115, 518
Eco57I	CTGAAG	3 cut(s)	33, 527, 786
EcoO109I	RGGNCCY	1 cut(s)	115
EcoRII	CCWGG	2 cut(s)	514, 793
EcoRV	GATATC	1 cut(s)	946
EcoT14I	CCWWGG	2 cut(s)	111, 443
EcoT22I	ATGCAT	1 cut(s)	670
ErhI	CCWWGG	2 cut(s)	111, 443
FaeI	CATG	4 cut(s)	447, 532, 683, 822
FaiI	YATR	8 cut(s)	437, 445, 455, 490, 530, 666, 681, 820
FatI	CATG	4 cut(s)	443, 528, 679, 818
Fnu4HI	GCNGC	1 cut(s)	644
Fsp4HI	GCNGC	1 cut(s)	644
GluI	GCNGC	1 cut(s)	644
GsaI	CCCAGC	1 cut(s)	58
GsuI	CTGGAG	1 cut(s)	212
HaeIII	GGCC	3 cut(s)	223, 239, 653
Hin1II	CATG	4 cut(s)	447, 532, 683, 822
HinfI	GANTC	4 cut(s)	329, 698, 755, 815
HphI	GGTGA	1 cut(s)	953
Hpy166II	GTNNAC	2 cut(s)	292, 692
Hpy188I	TCNGA	5 cut(s)	141, 286, 307, 391, 718
Hpy188III	TCNNGA	6 cut(s)	191, 215, 335, 469, 812, 917
Hpy8I	GTNNAC	2 cut(s)	292, 692
HpyAV	CCTTC	6 cut(s)	54, 265, 367, 471, 559, 829
HpyCH4III	ACNGT	1 cut(s)	583
HpyCH4V	TGCA	5 cut(s)	128, 314, 532, 635, 668
HpyF10VI	GCNNNNNNNGC	2 cut(s)	181, 538
HpyF3I	CTNAG	3 cut(s)	306, 362, 831
Hsp92II	CATG	4 cut(s)	447, 532, 683, 822
Kzo9I	GATC	6 cut(s)	4, 19, 211, 457, 718, 797
LguI	GCTCTTC	1 cut(s)	889
LmnI	GCTCC	3 cut(s)	46, 449, 481
Lsp1109I	GCAGC	1 cut(s)	655
LweI	GCATC	4 cut(s)	67, 386, 677, 780
MalI	GATC	6 cut(s)	6, 21, 213, 459, 720, 799
MboI	GATC	6 cut(s)	4, 19, 211, 457, 718, 797
MboII	GAAGA	8 cut(s)	39, 53, 59, 364, 380, 792, 876, 891
MflI	RGATCY	3 cut(s)	211, 457, 797
MluCI	AATT	5 cut(s)	79, 158, 258, 296, 522
MlyI	GAGTC	2 cut(s)	749, 824
MmeI	TCCRAC	1 cut(s)	641
MnlI	CCTC	8 cut(s)	75, 81, 156, 159, 423, 725, 757, 937
Mph1103I	ATGCAT	1 cut(s)	670
MroXI	GAANNNNTTC	1 cut(s)	883
MseI	TTAA	5 cut(s)	78, 278, 299, 383, 786
MspCI	CTTAAG	1 cut(s)	785
MspR9I	CCNGG	2 cut(s)	516, 795
MvaI	CCWGG	2 cut(s)	516, 795
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	2 cut(s)	181, 538
NcoI	CCATGG	1 cut(s)	443
NdeII	GATC	6 cut(s)	4, 19, 211, 457, 718, 797
NlaIII	CATG	4 cut(s)	447, 532, 683, 822
NlaIV	GGNNCC	3 cut(s)	117, 459, 477
NsiI	ATGCAT	1 cut(s)	670
NspI	RCATGY	1 cut(s)	683
PaqCI	CACCTGC	1 cut(s)	20
PciI	ACATGT	1 cut(s)	679
PciSI	GCTCTTC	1 cut(s)	889
PdmI	GAANNNNTTC	1 cut(s)	883
PfeI	GAWTC	2 cut(s)	329, 698
PkrI	GCNGC	1 cut(s)	645
PleI	GAGTC	2 cut(s)	749, 823
PpsI	GAGTC	2 cut(s)	749, 823
PpuMI	RGGWCCY	1 cut(s)	115
PscI	ACATGT	1 cut(s)	679
Psp5II	RGGWCCY	1 cut(s)	115
Psp6I	CCWGG	2 cut(s)	514, 793
PspFI	CCCAGC	1 cut(s)	54
PspGI	CCWGG	2 cut(s)	514, 793
PspN4I	GGNNCC	3 cut(s)	117, 459, 477
PspPI	GGNCC	3 cut(s)	115, 518, 652
PspPPI	RGGWCCY	1 cut(s)	115
PstI	CTGCAG	1 cut(s)	637
PstNI	CAGNNNCTG	2 cut(s)	125, 581
PsuI	RGATCY	3 cut(s)	211, 457, 797
RsaI	GTAC	1 cut(s)	783
RsaNI	GTAC	1 cut(s)	782
SapI	GCTCTTC	1 cut(s)	889
SaqAI	TTAA	5 cut(s)	78, 278, 299, 383, 786
SatI	GCNGC	1 cut(s)	644
Sau3AI	GATC	6 cut(s)	4, 19, 211, 457, 718, 797
Sau96I	GGNCC	3 cut(s)	115, 518, 652
SchI	GAGTC	2 cut(s)	749, 824
ScrFI	CCNGG	2 cut(s)	516, 795
SfaNI	GCATC	4 cut(s)	67, 386, 677, 780
SfcI	CTRYAG	2 cut(s)	501, 633
SinI	GGWCC	2 cut(s)	115, 518
SmlI	CTYRAG	2 cut(s)	785, 906
SmoI	CTYRAG	2 cut(s)	785, 906
Sse9I	AATT	5 cut(s)	79, 158, 258, 296, 522
SsiI	CCGC	3 cut(s)	151, 512, 740
StyD4I	CCNGG	2 cut(s)	514, 793
StyI	CCWWGG	2 cut(s)	111, 443
TaaI	ACNGT	1 cut(s)	583
TaqI	TCGA	1 cut(s)	887
TasI	AATT	5 cut(s)	79, 158, 258, 296, 522
TatI	WGTACW	1 cut(s)	781
TfiI	GAWTC	2 cut(s)	329, 698
Tru1I	TTAA	5 cut(s)	78, 278, 299, 383, 786
Tru9I	TTAA	5 cut(s)	78, 278, 299, 383, 786
TseI	GCWGC	1 cut(s)	643
TspDTI	ATGAA	3 cut(s)	342, 477, 891
Vha464I	CTTAAG	1 cut(s)	785
VpaK11BI	GGWCC	2 cut(s)	115, 518
XceI	RCATGY	1 cut(s)	683
XmnI	GAANNNNTTC	1 cut(s)	883
Zsp2I	ATGCAT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.