Rorug02G0079400

Calcium-dependent protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001822
Physical Location & Seq
Reverse (-)
6422692 .. 6425317
2626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0079400.1

Sequence Viewer

Length: 810 bp
ATGGCAGAGGCAGCCCAGAAACGAGTGAGCCAGCCGGAGAAAGTAGTTATAACTAACAAACATGGTGAAAAGCTTGTGGGATTATTGCATGAAACCGGTTCTAAAGAGCTTGTGATCTTGTGCCATGGAGCTCGATCCCACAAGGGAGATAATATTATGACTACACTTGCTCTTGCATTGGAAAAGGAAGGAATTAGTGCTTTCCGTTTCGATTTTGCTGGAAATGGAGAAAGTGAAGGCACCTTTCAGTTTGGTCAATACTGGAGAGAGGTTGATGACTTGCATGCTGTAGTCCAACACTTCTCTGGGACAAACCATACAGTGAGTGCAATTCTTGGCCACAGTAAAGGAGGGGATGAGGTGCTTCTGCATGCTTCTAAGTATGGTGACGTTCGCACGGTTGTCAATGTTTCTGGACGTTATGATCTGAATGGAGGCCTTGAACTACGGTTAGGGAAAAACTTTATGGAAAGGATCAAGAAGCAAGGATACTTGGATATTAAGGATAAGACAGGAACTTTCGATTGTCGTGTGACAGAGGAAAGTTTGCTGGATCGCATGAATACTAATATGCATGAATCATGCCTTAAGATTGCCAAAGATTGCCGTGTTTTGACAGTCCATGGATCTGATGACGACGTGATCCCCGTTGGAGATGCACTGGAGTTTGCCAAGATAATACCTAACCACAAGTTACATGTTATACAAGGAGCTGATCATTATTACAGCGCTCACCAAGCTGAGTTAGCGTCAACTATTTTGGAATTCCTTAAGGCAGCTTTCCAAGAGGACAAGACTACTTCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0016791 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0023052 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048519 GO:0048583 GO:0048585 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060688 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0097305 GO:0097306 GO:0098542 GO:0140096 GO:1900424 GO:1900425 GO:1900618 GO:1901564 GO:1901700 GO:1901701 GO:1905428 GO:2000026 GO:2000032
KEGG Pathways
Metabolic & Signaling
ko04626 ko05145 map04626 map05145
Pfam Domains
Protein Families
EF-hand_1 EF-hand_5 Pkinase

Protein Analysis

269

Amino Acids

29.76

Weight (kDa)

6.1

Isoelectric Point (pI)

23.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 35 - 158 1.3e-12 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 50
AccB1I GGYRCC 1 cut(s) 239
AclWI GGATC 5 cut(s) 129, 482, 561, 634, 637
AcoI YGGCCR 1 cut(s) 337
AcsI RAATTY 1 cut(s) 764
AfeI AGCGCT 1 cut(s) 730
AflII CTTAAG 2 cut(s) 587, 770
AflIII ACRYGT 1 cut(s) 697
AgeI ACCGGT 1 cut(s) 95
AgsI TTSAA 1 cut(s) 443
AjiI CACGTC 1 cut(s) 640
AluBI AGCT 6 cut(s) 73, 109, 131, 713, 740, 779
AluI AGCT 6 cut(s) 73, 109, 131, 713, 740, 779
Alw21I GWGCWC 1 cut(s) 133
AlwI GGATC 5 cut(s) 129, 482, 561, 634, 637
Aor51HI AGCGCT 1 cut(s) 730
AoxI GGCC 2 cut(s) 337, 436
ApeKI GCWGC 2 cut(s) 11, 776
ApoI RAATTY 1 cut(s) 764
AsiGI ACCGGT 1 cut(s) 95
AspLEI GCGC 1 cut(s) 731
AsuHPI GGTGA 3 cut(s) 77, 398, 725
BalI TGGCCA 1 cut(s) 339
BanI GGYRCC 1 cut(s) 239
BanII GRGCYC 1 cut(s) 133
BarI GAAGNNNNNNTAC 2 cut(s) 473, 505
Bbv12I GWGCWC 1 cut(s) 133
BbvI GCAGC 2 cut(s) 23, 788
BceAI ACGGC 1 cut(s) 591
BciVI GTATCC 1 cut(s) 482
BclI TGATCA 1 cut(s) 715
BfaI CTAG 1 cut(s) 808
BfmI CTRYAG 1 cut(s) 288
BfoI RGCGCY 1 cut(s) 732
BfrI CTTAAG 2 cut(s) 587, 770
BfuI GTATCC 1 cut(s) 482
BisI GCNGC 2 cut(s) 12, 777
BlsI GCNGC 2 cut(s) 13, 778
BmgBI CACGTC 1 cut(s) 640
BmiI GGNNCC 1 cut(s) 241
BmsI GCATC 1 cut(s) 646
BpmI CTGGAG 2 cut(s) 283, 683
BsaJI CCNNGG 2 cut(s) 124, 622
BsaWI WCCGGW 1 cut(s) 95
Bse118I RCCGGY 1 cut(s) 95
Bse1I ACTGG 2 cut(s) 266, 666
BseDI CCNNGG 2 cut(s) 124, 622
BseGI GGATG 1 cut(s) 361
BseMII CTCAG 1 cut(s) 732
BseNI ACTGG 2 cut(s) 266, 666
BseXI GCAGC 2 cut(s) 23, 788
BshFI GGCC 2 cut(s) 339, 438
BshNI GGYRCC 1 cut(s) 239
BshTI ACCGGT 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 133
BsiSI CCGG 2 cut(s) 35, 96
BslFI GGGAC 1 cut(s) 322
BsmFI GGGAC 1 cut(s) 322
BsnI GGCC 2 cut(s) 339, 438
Bsp1286I GDGCHC 1 cut(s) 133
Bsp143I GATC 8 cut(s) 114, 134, 424, 474, 553, 626, 642, 715
Bsp19I CCATGG 2 cut(s) 124, 622
BspANI GGCC 2 cut(s) 339, 438
BspCNI CTCAG 1 cut(s) 733
BspLI GGNNCC 1 cut(s) 241
BspPI GGATC 5 cut(s) 129, 482, 561, 634, 637
BspT107I GGYRCC 1 cut(s) 239
BspTI CTTAAG 2 cut(s) 587, 770
BsrFI RCCGGY 1 cut(s) 95
BsrI ACTGG 2 cut(s) 266, 666
BssAI RCCGGY 1 cut(s) 95
BssECI CCNNGG 2 cut(s) 124, 622
BssMI GATC 8 cut(s) 114, 134, 424, 474, 553, 626, 642, 715
BssT1I CCWWGG 2 cut(s) 124, 622
Bst4CI ACNGT 5 cut(s) 322, 344, 400, 450, 619
BstAFI CTTAAG 2 cut(s) 587, 770
BstC8I GCNNGC 3 cut(s) 32, 285, 372
BstDEI CTNAG 2 cut(s) 378, 741
BstDSI CCRYGG 2 cut(s) 124, 622
BstF5I GGATG 1 cut(s) 361
BstH2I RGCGCY 1 cut(s) 732
BstHHI GCGC 1 cut(s) 731
BstKTI GATC 8 cut(s) 117, 137, 427, 477, 556, 629, 645, 718
BstMBI GATC 8 cut(s) 114, 134, 424, 474, 553, 626, 642, 715
BstMWI GCNNNNNNNGC 3 cut(s) 11, 737, 746
BstNSI RCATGY 3 cut(s) 287, 374, 701
BstSFI CTRYAG 1 cut(s) 288
BstV1I GCAGC 2 cut(s) 23, 788
BstX2I RGATCY 1 cut(s) 626
BstYI RGATCY 1 cut(s) 626
BsuI GTATCC 1 cut(s) 482
BsuRI GGCC 2 cut(s) 339, 438
BtgI CCRYGG 2 cut(s) 124, 622
BtrI CACGTC 1 cut(s) 640
BtsCI GGATG 1 cut(s) 361
BtsIMutI CAGTG 2 cut(s) 327, 659
Cac8I GCNNGC 3 cut(s) 32, 285, 372
CfoI GCGC 1 cut(s) 731
Cfr10I RCCGGY 1 cut(s) 95
CseI GACGC 1 cut(s) 738
CspAI ACCGGT 1 cut(s) 95
DdeI CTNAG 2 cut(s) 378, 741
DpnI GATC 8 cut(s) 116, 136, 426, 476, 555, 628, 644, 717
DpnII GATC 8 cut(s) 114, 134, 424, 474, 553, 626, 642, 715
EaeI YGGCCR 1 cut(s) 337
Ecl136II GAGCTC 1 cut(s) 131
Eco130I CCWWGG 2 cut(s) 124, 622
Eco147I AGGCCT 1 cut(s) 438
Eco24I GRGCYC 1 cut(s) 133
Eco47III AGCGCT 1 cut(s) 730
Eco53kI GAGCTC 1 cut(s) 131
EcoICRI GAGCTC 1 cut(s) 131
EcoRI GAATTC 1 cut(s) 764
EcoT14I CCWWGG 2 cut(s) 124, 622
EcoT22I ATGCAT 1 cut(s) 576
EcoT38I GRGCYC 1 cut(s) 133
ErhI CCWWGG 2 cut(s) 124, 622
FaqI GGGAC 1 cut(s) 322
FbaI TGATCA 1 cut(s) 715
Fnu4HI GCNGC 2 cut(s) 12, 777
FokI GGATG 1 cut(s) 368
FriOI GRGCYC 1 cut(s) 133
Fsp4HI GCNGC 2 cut(s) 12, 777
FspBI CTAG 1 cut(s) 808
GlaI GCGC 1 cut(s) 730
GluI GCNGC 2 cut(s) 12, 777
GsuI CTGGAG 2 cut(s) 283, 683
HaeII RGCGCY 1 cut(s) 732
HaeIII GGCC 2 cut(s) 339, 438
HapII CCGG 2 cut(s) 35, 96
HgaI GACGC 1 cut(s) 738
HhaI GCGC 1 cut(s) 731
Hin6I GCGC 1 cut(s) 729
HinP1I GCGC 1 cut(s) 729
HincII GTYRAC 1 cut(s) 753
HindII GTYRAC 1 cut(s) 753
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 1 cut(s) 578
HpaII CCGG 2 cut(s) 35, 96
HphI GGTGA 3 cut(s) 77, 398, 725
Hpy166II GTNNAC 1 cut(s) 753
Hpy188I TCNGA 2 cut(s) 429, 631
Hpy188III TCNNGA 2 cut(s) 414, 478
Hpy8I GTNNAC 1 cut(s) 753
Hpy99I CGWCG 1 cut(s) 641
HpyAV CCTTC 2 cut(s) 182, 230
HpyCH4III ACNGT 5 cut(s) 322, 344, 400, 450, 619
HpyCH4IV ACGT 3 cut(s) 390, 418, 639
HpyCH4V TGCA 7 cut(s) 88, 176, 283, 329, 370, 574, 659
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 737, 746
HpyF3I CTNAG 2 cut(s) 378, 741
HpySE526I ACGT 3 cut(s) 390, 418, 639
HspAI GCGC 1 cut(s) 729
Ksp22I TGATCA 1 cut(s) 715
Kzo9I GATC 8 cut(s) 114, 134, 424, 474, 553, 626, 642, 715
LmnI GCTCC 2 cut(s) 128, 710
Lsp1109I GCAGC 2 cut(s) 23, 788
LweI GCATC 1 cut(s) 646
MaeI CTAG 1 cut(s) 808
MaeII ACGT 3 cut(s) 390, 418, 639
MaeIII GTNAC 3 cut(s) 386, 532, 693
MalI GATC 8 cut(s) 116, 136, 426, 476, 555, 628, 644, 717
MboI GATC 8 cut(s) 114, 134, 424, 474, 553, 626, 642, 715
MflI RGATCY 1 cut(s) 626
MhlI GDGCHC 1 cut(s) 133
MlsI TGGCCA 1 cut(s) 339
MluCI AATT 3 cut(s) 192, 330, 764
MluNI TGGCCA 1 cut(s) 339
MmeI TCCRAC 2 cut(s) 319, 631
MnlI CCTC 6 cut(s) 262, 344, 352, 428, 532, 781
Mox20I TGGCCA 1 cut(s) 339
Mph1103I ATGCAT 1 cut(s) 576
MscI TGGCCA 1 cut(s) 339
MseI TTAA 3 cut(s) 501, 588, 771
Msp20I TGGCCA 1 cut(s) 339
MspCI CTTAAG 2 cut(s) 587, 770
MspI CCGG 2 cut(s) 35, 96
MwoI GCNNNNNNNGC 3 cut(s) 11, 737, 746
NcoI CCATGG 2 cut(s) 124, 622
NdeII GATC 8 cut(s) 114, 134, 424, 474, 553, 626, 642, 715
NlaIV GGNNCC 1 cut(s) 241
NmuCI GTSAC 2 cut(s) 386, 532
NsiI ATGCAT 1 cut(s) 576
NspI RCATGY 3 cut(s) 287, 374, 701
PaeI GCATGC 2 cut(s) 287, 374
PceI AGGCCT 1 cut(s) 438
PciI ACATGT 1 cut(s) 697
PcsI WCGNNNNNNNCGW 1 cut(s) 645
PfeI GAWTC 1 cut(s) 578
PinAI ACCGGT 1 cut(s) 95
PkrI GCNGC 2 cut(s) 13, 778
PscI ACATGT 1 cut(s) 697
PsiI TTATAA 1 cut(s) 50
Psp124BI GAGCTC 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 241
PsuI RGATCY 1 cut(s) 626
SacI GAGCTC 1 cut(s) 133
SaqAI TTAA 3 cut(s) 501, 588, 771
SatI GCNGC 2 cut(s) 12, 777
Sau3AI GATC 8 cut(s) 114, 134, 424, 474, 553, 626, 642, 715
SduI GDGCHC 1 cut(s) 133
SfaNI GCATC 1 cut(s) 646
SfcI CTRYAG 1 cut(s) 288
SmlI CTYRAG 2 cut(s) 587, 770
SmoI CTYRAG 2 cut(s) 587, 770
SphI GCATGC 2 cut(s) 287, 374
Sse9I AATT 3 cut(s) 192, 330, 764
SseBI AGGCCT 1 cut(s) 438
SspI AATATT 1 cut(s) 154
SspMI CTAG 1 cut(s) 808
SstI GAGCTC 1 cut(s) 133
StuI AGGCCT 1 cut(s) 438
StyI CCWWGG 2 cut(s) 124, 622
TaaI ACNGT 5 cut(s) 322, 344, 400, 450, 619
TaiI ACGT 3 cut(s) 393, 421, 642
TaqI TCGA 3 cut(s) 133, 210, 522
TasI AATT 3 cut(s) 192, 330, 764
TfiI GAWTC 1 cut(s) 578
Tru1I TTAA 3 cut(s) 501, 588, 771
Tru9I TTAA 3 cut(s) 501, 588, 771
TscAI CASTG 2 cut(s) 327, 666
TseFI GTSAC 2 cut(s) 386, 532
TseI GCWGC 2 cut(s) 11, 776
Tsp45I GTSAC 2 cut(s) 386, 532
TspDTI ATGAA 3 cut(s) 105, 575, 591
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 2 cut(s) 327, 666
Vha464I CTTAAG 2 cut(s) 587, 770
XapI RAATTY 1 cut(s) 764
XceI RCATGY 3 cut(s) 287, 374, 701
XcmI CCANNNNNNNNNTGG 1 cut(s) 302
XspI CTAG 1 cut(s) 808
Zsp2I ATGCAT 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.