Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002487.1

Orthogroup ID

OG0001822

Physical Location & Seq

Genomic Coordinates Forward (+)

31319 .. 32514

Gene Structure 1196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002487.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atggatcagtggaaaggtgatgactttgcaggagtttcagctccttcttcgtctcagcctcttgcttgtgattccaggaaaagggctgatttagaaaccaaggaccctgtttctgcgagaaaagtacagaaagctgatcgtgaaaaattgaggagggatcggctgaatgagcattttcttgatttgggaaacacattagacccagataggcccaagaacgacaaggccactatccttacagacacaattcaaatgttgaaggatttaacgtcggatgtgaacaaactgaaggctgagtgtgcagcactcaatgatgaatcccatgagctgacagtggagaagaatgagctaagagaagagaaggcatctttaaaatctgatattgagaatctcaatgctcaatatcagcaaagagtgagggttatgtttccatggggggctatggatccttctgttgttatggctccaccttattcatatccaatgcctgtagctgttccgcccggtccaattcctatggttagagttagagatagggttgacgatctgattctccacagaagcaattcaagcaaaggtgaagcaaaagtagatgagaacaaagacttcgtatgtcgattctgttactcaaaccagaactggggaatctgtgaagaaatgattttgactaacatacaccacaaaaatgattataatctttccatattttcattataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

238

Amino Acids

27.12

Weight (kDa)

5.62

Isoelectric Point (pI)

38.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19860 AT3G19860 AT3G19860
fragaria_vesca	FvH4_1g11770 FvH4_2g02000 FvH4_2g02000 FvH4_2g02000
malus_domestica	MD02G1132000.v1.1 MD05G1115800.v1.1 MD15G1245200.v1.1
prunus_persica	Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.8G160700_v2.0.a1
pyrus_communis	pycom02g10290 pycom05g11010 pycom15g21570
rosa_chinensis	RchiOBHm_Chr2g0099391 RchiOBHm_Chr6g0245181
rosa_laevigata	RLG00000015318 RLG00000016878
rosa_multiflora	Rmu_co8372605.1_g000001 Rmu_sc0001288.1_g000004 Rmu_sc0002487.1_g000008 Rmu_sc0027529.1_g000004
rosa_roxburghii	Rroxscaffold_2G00143110 Rroxscaffold_3G00242190 Rroxscaffold_7G00215380
rosa_rugosa	Rorug02G0079200 Rorug02G0079300 Rorug02G0079400 Rorug05G0512600 Rorug05G0512700 Rorug05G0512800.1
rosa_samantha	Rh2AG129100 Rh2BG132100 Rh2CG132900 Rh2DG133100 Rh6AG027700 Rh6BG023800 Rh6CG022200 Rh6DG022300
rosa_wichuraiana	Rw2G009940 Rw6G002340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	693, 715
AciI	CCGC	1 cut(s)	500
AclWI	GGATC	4 cut(s)	12, 165, 440, 453
AcuI	CTGAAG	1 cut(s)	308
AfaI	GTAC	1 cut(s)	126
AfiI	CCNNNNNNNGG	2 cut(s)	81, 640
AgsI	TTSAA	3 cut(s)	251, 259, 570
AjnI	CCWGG	1 cut(s)	74
AluBI	AGCT	5 cut(s)	41, 134, 328, 349, 494
AluI	AGCT	5 cut(s)	41, 134, 328, 349, 494
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	4 cut(s)	12, 165, 440, 453
AoxI	GGCC	2 cut(s)	209, 225
ApeKI	GCWGC	1 cut(s)	302
Asp700I	GAANNNNTTC	1 cut(s)	565
AspS9I	GGNCC	3 cut(s)	103, 210, 506
AsuC2I	CCSGG	1 cut(s)	504
AsuHPI	GGTGA	2 cut(s)	29, 590
AvaII	GGWCC	2 cut(s)	103, 506
BamHI	GGATCC	1 cut(s)	445
BbvI	GCAGC	1 cut(s)	314
BciT130I	CCWGG	1 cut(s)	76
BcnI	CCSGG	1 cut(s)	504
BcoDI	GTCTC	1 cut(s)	57
BfmI	CTRYAG	1 cut(s)	489
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
Bme1390I	CCNGG	2 cut(s)	76, 504
Bme18I	GGWCC	2 cut(s)	103, 506
BmgT120I	GGNCC	3 cut(s)	103, 210, 506
BmiI	GGNNCC	3 cut(s)	105, 447, 465
BmrFI	CCNGG	2 cut(s)	76, 504
BmrI	ACTGGG	1 cut(s)	649
BmsI	GCATC	1 cut(s)	374
BmuI	ACTGGG	1 cut(s)	649
BpuMI	CCSGG	1 cut(s)	504
BsaBI	GATNNNNATC	1 cut(s)	693
BsaJI	CCNNGG	2 cut(s)	99, 431
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 640
Bse1I	ACTGG	1 cut(s)	644
Bse8I	GATNNNNATC	1 cut(s)	693
BseBI	CCWGG	1 cut(s)	76
BseDI	CCNNGG	2 cut(s)	99, 431
BseGI	GGATG	1 cut(s)	280
BseJI	GATNNNNATC	1 cut(s)	693
BseLI	CCNNNNNNNGG	2 cut(s)	81, 640
BseMII	CTCAG	2 cut(s)	68, 285
BseNI	ACTGG	1 cut(s)	644
BseRI	GAGGAG	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	314
BsgI	GTGCAG	1 cut(s)	321
BshFI	GGCC	2 cut(s)	211, 227
BsiSI	CCGG	1 cut(s)	504
BslI	CCNNNNNNNGG	2 cut(s)	81, 640
BsmAI	GTCTC	1 cut(s)	57
BsmBI	CGTCTC	1 cut(s)	57
BsnI	GGCC	2 cut(s)	211, 227
Bsp143I	GATC	5 cut(s)	4, 136, 157, 445, 544
Bsp19I	CCATGG	1 cut(s)	431
BspACI	CCGC	1 cut(s)	500
BspANI	GGCC	2 cut(s)	211, 227
BspCNI	CTCAG	2 cut(s)	67, 286
BspLI	GGNNCC	3 cut(s)	105, 447, 465
BspPI	GGATC	4 cut(s)	12, 165, 440, 453
BsrI	ACTGG	1 cut(s)	644
BssECI	CCNNGG	2 cut(s)	99, 431
BssMI	GATC	5 cut(s)	4, 136, 157, 445, 544
BssT1I	CCWWGG	2 cut(s)	99, 431
Bst2UI	CCWGG	1 cut(s)	76
Bst4CI	ACNGT	1 cut(s)	334
Bst6I	CTCTTC	1 cut(s)	351
BstDEI	CTNAG	3 cut(s)	54, 294, 350
BstDSI	CCRYGG	1 cut(s)	431
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	5 cut(s)	7, 139, 160, 448, 547
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	5 cut(s)	4, 136, 157, 445, 544
BstMWI	GCNNNNNNNGC	3 cut(s)	169, 299, 570
BstNI	CCWGG	1 cut(s)	76
BstSCI	CCNGG	2 cut(s)	74, 502
BstSFI	CTRYAG	1 cut(s)	489
BstV1I	GCAGC	1 cut(s)	314
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
BsuRI	GGCC	2 cut(s)	211, 227
BtgI	CCRYGG	1 cut(s)	431
BtsCI	GGATG	1 cut(s)	280
BtsIMutI	CAGTG	2 cut(s)	14, 339
Cfr13I	GGNCC	3 cut(s)	103, 210, 506
Csp6I	GTAC	1 cut(s)	125
CviAII	CATG	2 cut(s)	323, 432
CviQI	GTAC	1 cut(s)	125
DdeI	CTNAG	3 cut(s)	54, 294, 350
DpnI	GATC	5 cut(s)	6, 138, 159, 447, 546
DpnII	GATC	5 cut(s)	4, 136, 157, 445, 544
DraI	TTTAAA	1 cut(s)	372
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
EciI	GGCGGA	1 cut(s)	489
Eco130I	CCWWGG	2 cut(s)	99, 431
Eco47I	GGWCC	2 cut(s)	103, 506
Eco57I	CTGAAG	1 cut(s)	308
EcoO109I	RGGNCCY	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	74
EcoT14I	CCWWGG	2 cut(s)	99, 431
ErhI	CCWWGG	2 cut(s)	99, 431
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	2 cut(s)	326, 435
FatI	CATG	2 cut(s)	322, 431
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	1 cut(s)	303
GluI	GCNGC	1 cut(s)	303
HaeIII	GGCC	2 cut(s)	211, 227
HapII	CCGG	1 cut(s)	504
Hin1II	CATG	2 cut(s)	326, 435
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HinfI	GANTC	6 cut(s)	71, 317, 388, 550, 618, 645
HpaII	CCGG	1 cut(s)	504
HphI	GGTGA	2 cut(s)	29, 590
Hpy166II	GTNNAC	2 cut(s)	280, 541
Hpy188I	TCNGA	3 cut(s)	274, 379, 549
Hpy188III	TCNNGA	2 cut(s)	140, 179
Hpy8I	GTNNAC	2 cut(s)	280, 541
Hpy99I	CGWCG	1 cut(s)	274
HpyAV	CCTTC	5 cut(s)	54, 253, 283, 355, 459
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4IV	ACGT	1 cut(s)	269
HpyCH4V	TGCA	2 cut(s)	29, 302
HpyF10VI	GCNNNNNNNGC	3 cut(s)	169, 299, 570
HpyF3I	CTNAG	3 cut(s)	54, 294, 350
HpySE526I	ACGT	1 cut(s)	269
Hsp92II	CATG	2 cut(s)	326, 435
Kzo9I	GATC	5 cut(s)	4, 136, 157, 445, 544
LmnI	GCTCC	2 cut(s)	46, 469
LpnPI	CCDG	9 cut(s)	15, 61, 88, 120, 216, 501, 517, 625, 647
Lsp1109I	GCAGC	1 cut(s)	314
LweI	GCATC	1 cut(s)	374
MaeII	ACGT	1 cut(s)	269
MaeIII	GTNAC	1 cut(s)	623
MalI	GATC	5 cut(s)	6, 138, 159, 447, 546
MboI	GATC	5 cut(s)	4, 136, 157, 445, 544
MboII	GAAGA	4 cut(s)	39, 352, 368, 665
MflI	RGATCY	1 cut(s)	445
MluCI	AATT	4 cut(s)	146, 246, 510, 565
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	4 cut(s)	69, 144, 147, 411
MroXI	GAANNNNTTC	1 cut(s)	565
MseI	TTAA	2 cut(s)	266, 371
MslI	CAYNNNNRTG	1 cut(s)	684
MspI	CCGG	1 cut(s)	504
MspR9I	CCNGG	2 cut(s)	76, 504
MvaI	CCWGG	1 cut(s)	76
MwoI	GCNNNNNNNGC	3 cut(s)	169, 299, 570
NciI	CCSGG	1 cut(s)	504
NcoI	CCATGG	1 cut(s)	431
NdeII	GATC	5 cut(s)	4, 136, 157, 445, 544
NlaIII	CATG	2 cut(s)	326, 435
NlaIV	GGNNCC	3 cut(s)	105, 447, 465
PdmI	GAANNNNTTC	1 cut(s)	565
PfeI	GAWTC	6 cut(s)	71, 317, 388, 550, 618, 645
PfoI	TCCNGGA	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	304
PpuMI	RGGWCCY	1 cut(s)	103
PsiI	TTATAA	2 cut(s)	693, 715
Psp5II	RGGWCCY	1 cut(s)	103
Psp6I	CCWGG	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	74
PspN4I	GGNNCC	3 cut(s)	105, 447, 465
PspPI	GGNCC	3 cut(s)	103, 210, 506
PspPPI	RGGWCCY	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	445
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
RseI	CAYNNNNRTG	1 cut(s)	684
SaqAI	TTAA	2 cut(s)	266, 371
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	5 cut(s)	4, 136, 157, 445, 544
Sau96I	GGNCC	3 cut(s)	103, 210, 506
ScrFI	CCNGG	2 cut(s)	76, 504
SetI	ASST	9 cut(s)	19, 43, 136, 272, 330, 351, 472, 496, 580
SfaNI	GCATC	1 cut(s)	374
SfcI	CTRYAG	1 cut(s)	489
SinI	GGWCC	2 cut(s)	103, 506
SmiMI	CAYNNNNRTG	1 cut(s)	684
Sse9I	AATT	4 cut(s)	146, 246, 510, 565
SsiI	CCGC	1 cut(s)	500
StyD4I	CCNGG	2 cut(s)	74, 502
StyI	CCWWGG	2 cut(s)	99, 431
TaaI	ACNGT	1 cut(s)	334
TaiI	ACGT	1 cut(s)	272
TaqI	TCGA	1 cut(s)	616
TasI	AATT	4 cut(s)	146, 246, 510, 565
TatI	WGTACW	1 cut(s)	124
TfiI	GAWTC	6 cut(s)	71, 317, 388, 550, 618, 645
Tru1I	TTAA	2 cut(s)	266, 371
Tru9I	TTAA	2 cut(s)	266, 371
TscAI	CASTG	2 cut(s)	14, 339
TseI	GCWGC	1 cut(s)	302
TspDTI	ATGAA	3 cut(s)	330, 465, 699
TspRI	CASTG	2 cut(s)	14, 339
VpaK11BI	GGWCC	2 cut(s)	103, 506
XmnI	GAANNNNTTC	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.