Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001822

Physical Location & Seq

Genomic Coordinates Forward (+)

7151137 .. 7153276

Gene Structure 2140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g10290.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGATGCTAAGGGAAAAGGTATATTTGTTATCTCACTCTAAAACAATTTTAATAAGAAATATAAAATTCAATAAAAAAAAAAGGGGCAAAAAGAAATTAAAAAAAATCCATATCCGAATCGGAGTGGCTTCCATTTCCCCCTGTGGTGGATTTTGCTGTGGAAAGCAAGCTGAGATTAGTGTTCAATTTTGTATCTTTGTGATTCCTCTCTCTTTCTTCCCCCAATTTCTTCAATTTGCAGTGAAGAACAAAACCCTAGCCTCAAAAATTGACCCCAAAATCATGGATCATTGGAAATCCGACGATTTCTCAGCTGCTTCGGTTCCTTCTTCTACTCAACCTCTTCCCTCCAGTCGCCCCCACAACTCCAACTCCGATTCCAGGCAAAGACTTGATGTGGAGACGAAGGACCCGATTGTTGCCAGAAAAGTTCAGAAAGCAGACCGCGAAAAGTTGAGGAGGGATCGACTCAATGAGCATTTTTTTGAGTTGGGCAACACATTAGATCCGGATAGGCCCAAGAACGATAAGGCAACCATCCTTACCGACACAATTCAAATGTTGAAGGATTTTACCGCTGATGTCAACAAACTAAAGGCCGAGTGTTCTGCACTTACTGATGAATCCCGTGAGCTAACGCAGGAGAAGAACGAGCTAAGAGAGGAGAAGGCATCTTTAAAATCTGATATTGAAAATCTAAATGTTCAGTATCAGCAGAGACTGAGAGTTATGTTTCCATGGGCTGGCATGGATCCTTCTGTTGTTATGGCTCCACCTTACTCATATCCAATGCGTGTGGCTGTCCCTTCTGGCCCAATTCCCATGCACCCGTCACTTCAGTCGTATCCTTACTTTCAAGCTCAAAATCCTGCTGCTATGCCCAATCCCTGTTCAACTTTTGTGCCGTATCCAGCACCTGCCAATCCTCCTGTACAACAGCCATCACCGCAGTATGCATCCGTCTCCCACCTTTCAAGCAAGCAAGATTCCAGGAGCAGATCATCAGATCATCAAAGGGGTAGCACTGCTGAAAGGTGTGATGACTCCAACGATGTGGCAACAGACCTTGAACTTAAGATGCCAGGATCTTCAACACCACAGGATTCATCTTCTGCAGTTAAGAAGGCCAAGCAATCACAGAGGAAAGATAGGAGTGTTACAGATGGATGCTCATCAAGTAGGCATTCTATATCTCAAGTTGTTCAGGATAGCTCCTCCAACAGCGTAGGTGACGTCCCTAAGCCTAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

418

Amino Acids

46.63

Weight (kDa)

9.46

Isoelectric Point (pI)

58.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19860 AT3G19860 AT3G19860
fragaria_vesca	FvH4_1g11770 FvH4_2g02000 FvH4_2g02000 FvH4_2g02000
malus_domestica	MD02G1132000.v1.1 MD05G1115800.v1.1 MD15G1245200.v1.1
prunus_persica	Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.8G160700_v2.0.a1
pyrus_communis	pycom02g10290 pycom05g11010 pycom15g21570
rosa_chinensis	RchiOBHm_Chr2g0099391 RchiOBHm_Chr6g0245181
rosa_laevigata	RLG00000015318 RLG00000016878
rosa_multiflora	Rmu_co8372605.1_g000001 Rmu_sc0001288.1_g000004 Rmu_sc0002487.1_g000008 Rmu_sc0027529.1_g000004
rosa_roxburghii	Rroxscaffold_2G00143110 Rroxscaffold_3G00242190 Rroxscaffold_7G00215380
rosa_rugosa	Rorug02G0079200 Rorug02G0079300 Rorug02G0079400 Rorug05G0512600 Rorug05G0512700 Rorug05G0512800.1
rosa_samantha	Rh2AG129100 Rh2BG132100 Rh2CG132900 Rh2DG133100 Rh6AG027700 Rh6BG023800 Rh6CG022200 Rh6DG022300
rosa_wichuraiana	Rw2G009940 Rw6G002340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	925
AatII	GACGTC	1 cut(s)	1236
Acc36I	ACCTGC	1 cut(s)	925
AccB7I	CCANNNNNTGG	1 cut(s)	743
AccII	CGCG	1 cut(s)	447
AccIII	TCCGGA	1 cut(s)	508
AciI	CCGC	3 cut(s)	445, 576, 947
AclWI	GGATC	6 cut(s)	294, 471, 500, 746, 759, 1093
AcsI	RAATTY	1 cut(s)	65
AcuI	CTGAAG	1 cut(s)	821
AcyI	GRCGYC	1 cut(s)	1233
AfaI	GTAC	1 cut(s)	933
AfiI	CCNNNNNNNGG	3 cut(s)	146, 381, 743
AflII	CTTAAG	1 cut(s)	1073
AjnI	CCWGG	3 cut(s)	380, 989, 1081
AluBI	AGCT	6 cut(s)	170, 314, 634, 655, 860, 1212
AluI	AGCT	6 cut(s)	170, 314, 634, 655, 860, 1212
Alw26I	GTCTC	3 cut(s)	395, 712, 967
AlwI	GGATC	6 cut(s)	294, 471, 500, 746, 759, 1093
AlwNI	CAGNNNCTG	2 cut(s)	721, 917
Aor13HI	TCCGGA	1 cut(s)	508
AoxI	GGCC	4 cut(s)	515, 597, 811, 1125
ApeKI	GCWGC	2 cut(s)	314, 872
ApoI	RAATTY	1 cut(s)	65
AspS9I	GGNCC	3 cut(s)	409, 516, 812
AsuHPI	GGTGA	2 cut(s)	936, 1241
AvaII	GGWCC	1 cut(s)	409
BamHI	GGATCC	1 cut(s)	751
BbvI	GCAGC	2 cut(s)	301, 859
BccI	CCATC	3 cut(s)	545, 949, 1157
BceAI	ACGGC	1 cut(s)	889
BcgI	CGANNNNNNTGC	2 cut(s)	590, 624
BciT130I	CCWGG	3 cut(s)	382, 991, 1083
BciVI	GTATCC	2 cut(s)	855, 918
BcoDI	GTCTC	3 cut(s)	395, 712, 967
BfaI	CTAG	1 cut(s)	257
BfmI	CTRYAG	1 cut(s)	1113
BfrI	CTTAAG	1 cut(s)	1073
BfuAI	ACCTGC	1 cut(s)	925
BfuI	GTATCC	2 cut(s)	855, 918
BisI	GCNGC	2 cut(s)	315, 873
BlsI	GCNGC	2 cut(s)	316, 874
Bme1390I	CCNGG	3 cut(s)	382, 991, 1083
Bme18I	GGWCC	1 cut(s)	409
BmgT120I	GGNCC	3 cut(s)	409, 516, 812
BmiI	GGNNCC	4 cut(s)	324, 411, 753, 771
BmrFI	CCNGG	3 cut(s)	382, 991, 1083
BmsI	GCATC	4 cut(s)	680, 965, 1068, 1157
BpmI	CTGGAG	1 cut(s)	334
Bpu10I	CCTNAGC	2 cut(s)	8, 1239
BpuEI	CTTGAG	1 cut(s)	1179
BsaBI	GATNNNNATC	1 cut(s)	1171
BsaHI	GRCGYC	1 cut(s)	1233
BsaJI	CCNNGG	1 cut(s)	737
BsaWI	WCCGGW	1 cut(s)	508
BsaXI	ACNNNNNCTCC	2 cut(s)	356, 386
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 381, 743
Bse1I	ACTGG	1 cut(s)	351
Bse8I	GATNNNNATC	1 cut(s)	1171
BseAI	TCCGGA	1 cut(s)	508
BseBI	CCWGG	3 cut(s)	382, 991, 1083
BseDI	CCNNGG	1 cut(s)	737
BseGI	GGATG	3 cut(s)	537, 956, 1172
BseJI	GATNNNNATC	1 cut(s)	1171
BseLI	CCNNNNNNNGG	3 cut(s)	146, 381, 743
BseMII	CTCAG	3 cut(s)	162, 324, 713
BseNI	ACTGG	1 cut(s)	351
BseRI	GAGGAG	3 cut(s)	472, 677, 1204
BseXI	GCAGC	2 cut(s)	301, 859
BsgI	GTGCAG	1 cut(s)	594
Bsh1236I	CGCG	1 cut(s)	447
BshFI	GGCC	4 cut(s)	517, 599, 813, 1127
BsiSI	CCGG	1 cut(s)	509
BslFI	GGGAC	2 cut(s)	788, 1220
BslI	CCNNNNNNNGG	3 cut(s)	146, 381, 743
BsmAI	GTCTC	3 cut(s)	395, 712, 967
BsmBI	CGTCTC	2 cut(s)	395, 967
BsmFI	GGGAC	2 cut(s)	788, 1220
BsmI	GAATGC	1 cut(s)	1183
BsnI	GGCC	4 cut(s)	517, 599, 813, 1127
Bsp13I	TCCGGA	1 cut(s)	508
Bsp1407I	TGTACA	1 cut(s)	931
Bsp143I	GATC	7 cut(s)	286, 463, 505, 751, 998, 1006, 1085
Bsp19I	CCATGG	1 cut(s)	737
BspACI	CCGC	3 cut(s)	445, 576, 947
BspANI	GGCC	4 cut(s)	517, 599, 813, 1127
BspCNI	CTCAG	3 cut(s)	163, 323, 714
BspEI	TCCGGA	1 cut(s)	508
BspFNI	CGCG	1 cut(s)	447
BspLI	GGNNCC	4 cut(s)	324, 411, 753, 771
BspMAI	CTGCAG	1 cut(s)	1117
BspMI	ACCTGC	1 cut(s)	925
BspPI	GGATC	6 cut(s)	294, 471, 500, 746, 759, 1093
BspTI	CTTAAG	1 cut(s)	1073
BsrGI	TGTACA	1 cut(s)	931
BsrI	ACTGG	1 cut(s)	351
BssECI	CCNNGG	1 cut(s)	737
BssMI	GATC	7 cut(s)	286, 463, 505, 751, 998, 1006, 1085
BssNI	GRCGYC	1 cut(s)	1233
BssT1I	CCWWGG	1 cut(s)	737
Bst2UI	CCWGG	3 cut(s)	382, 991, 1083
Bst6I	CTCTTC	1 cut(s)	348
BstACI	GRCGYC	1 cut(s)	1233
BstAFI	CTTAAG	1 cut(s)	1073
BstAUI	TGTACA	1 cut(s)	931
BstC8I	GCNNGC	3 cut(s)	168, 745, 980
BstDEI	CTNAG	6 cut(s)	8, 171, 310, 656, 722, 1239
BstDSI	CCRYGG	1 cut(s)	737
BstF5I	GGATG	3 cut(s)	537, 956, 1172
BstFNI	CGCG	1 cut(s)	447
BstKTI	GATC	7 cut(s)	289, 466, 508, 754, 1001, 1009, 1088
BstMAI	GTCTC	3 cut(s)	395, 712, 967
BstMBI	GATC	7 cut(s)	286, 463, 505, 751, 998, 1006, 1085
BstMWI	GCNNNNNNNGC	1 cut(s)	946
BstNI	CCWGG	3 cut(s)	382, 991, 1083
BstSCI	CCNGG	3 cut(s)	380, 989, 1081
BstSFI	CTRYAG	1 cut(s)	1113
BstUI	CGCG	1 cut(s)	447
BstV1I	GCAGC	2 cut(s)	301, 859
BstX2I	RGATCY	3 cut(s)	505, 751, 1085
BstXI	CCANNNNNNTGG	2 cut(s)	283, 1054
BstYI	RGATCY	3 cut(s)	505, 751, 1085
BsuI	GTATCC	2 cut(s)	855, 918
BsuRI	GGCC	4 cut(s)	517, 599, 813, 1127
BtgI	CCRYGG	1 cut(s)	737
BtsCI	GGATG	3 cut(s)	537, 956, 1172
BtsI	GCAGTG	2 cut(s)	246, 1023
BtsIMutI	CAGTG	2 cut(s)	246, 1023
BveI	ACCTGC	1 cut(s)	925
Cac8I	GCNNGC	3 cut(s)	168, 745, 980
CaiI	CAGNNNCTG	2 cut(s)	721, 917
Cfr13I	GGNCC	3 cut(s)	409, 516, 812
Csp6I	GTAC	1 cut(s)	932
CspCI	CAANNNNNGTGG	2 cut(s)	777, 812
CviAII	CATG	4 cut(s)	283, 738, 748, 823
CviQI	GTAC	1 cut(s)	932
DdeI	CTNAG	6 cut(s)	8, 171, 310, 656, 722, 1239
DpnI	GATC	7 cut(s)	288, 465, 507, 753, 1000, 1008, 1087
DpnII	GATC	7 cut(s)	286, 463, 505, 751, 998, 1006, 1085
DraI	TTTAAA	1 cut(s)	678
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
Eco130I	CCWWGG	1 cut(s)	737
Eco47I	GGWCC	1 cut(s)	409
Eco57I	CTGAAG	1 cut(s)	821
EcoO109I	RGGNCCY	1 cut(s)	409
EcoRII	CCWGG	3 cut(s)	380, 989, 1081
EcoT14I	CCWWGG	1 cut(s)	737
EcoT22I	ATGCAT	1 cut(s)	958
ErhI	CCWWGG	1 cut(s)	737
Esp3I	CGTCTC	2 cut(s)	395, 967
FaeI	CATG	4 cut(s)	286, 741, 751, 826
FaqI	GGGAC	2 cut(s)	788, 1220
FatI	CATG	4 cut(s)	282, 737, 747, 822
Fnu4HI	GCNGC	2 cut(s)	315, 873
FokI	GGATG	3 cut(s)	524, 943, 1179
Fsp4HI	GCNGC	2 cut(s)	315, 873
FspBI	CTAG	1 cut(s)	257
GluI	GCNGC	2 cut(s)	315, 873
GsuI	CTGGAG	1 cut(s)	334
HaeIII	GGCC	4 cut(s)	517, 599, 813, 1127
HapII	CCGG	1 cut(s)	509
Hin1I	GRCGYC	1 cut(s)	1233
Hin1II	CATG	4 cut(s)	286, 741, 751, 826
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HinfI	GANTC	8 cut(s)	117, 202, 377, 468, 623, 986, 1043, 1103
HpaII	CCGG	1 cut(s)	509
HphI	GGTGA	2 cut(s)	936, 1241
Hpy166II	GTNNAC	1 cut(s)	586
Hpy188I	TCNGA	7 cut(s)	116, 122, 301, 376, 435, 685, 1006
Hpy188III	TCNNGA	2 cut(s)	509, 1205
Hpy8I	GTNNAC	1 cut(s)	586
Hpy99I	CGWCG	1 cut(s)	305
HpyAV	CCTTC	7 cut(s)	336, 400, 559, 661, 765, 816, 1117
HpyCH4IV	ACGT	1 cut(s)	1233
HpyCH4V	TGCA	5 cut(s)	239, 611, 826, 956, 1115
HpyF10VI	GCNNNNNNNGC	1 cut(s)	946
HpyF3I	CTNAG	6 cut(s)	8, 171, 310, 656, 722, 1239
HpySE526I	ACGT	1 cut(s)	1233
Hsp92I	GRCGYC	1 cut(s)	1233
Hsp92II	CATG	4 cut(s)	286, 741, 751, 826
Kpn2I	TCCGGA	1 cut(s)	508
Kzo9I	GATC	7 cut(s)	286, 463, 505, 751, 998, 1006, 1085
LmnI	GCTCC	3 cut(s)	775, 993, 1217
Lsp1109I	GCAGC	2 cut(s)	301, 859
LweI	GCATC	4 cut(s)	680, 965, 1068, 1157
MaeI	CTAG	1 cut(s)	257
MaeII	ACGT	1 cut(s)	1233
MaeIII	GTNAC	3 cut(s)	831, 1156, 1229
MalI	GATC	7 cut(s)	288, 465, 507, 753, 1000, 1008, 1087
MboI	GATC	7 cut(s)	286, 463, 505, 751, 998, 1006, 1085
MboII	GAAGA	8 cut(s)	208, 221, 256, 321, 335, 658, 1080, 1101
MflI	RGATCY	3 cut(s)	505, 751, 1085
MluCI	AATT	9 cut(s)	45, 65, 95, 185, 224, 233, 267, 552, 816
MlyI	GAGTC	2 cut(s)	462, 1037
MmeI	TCCRAC	4 cut(s)	324, 393, 1071, 1242
Mph1103I	ATGCAT	1 cut(s)	958
MroI	TCCGGA	1 cut(s)	508
MseI	TTAA	5 cut(s)	50, 98, 677, 1074, 1119
MspA1I	CMGCKG	2 cut(s)	314, 578
MspCI	CTTAAG	1 cut(s)	1073
MspI	CCGG	1 cut(s)	509
MspR9I	CCNGG	3 cut(s)	382, 991, 1083
Mva1269I	GAATGC	1 cut(s)	1183
MvaI	CCWGG	3 cut(s)	382, 991, 1083
MvnI	CGCG	1 cut(s)	447
MwoI	GCNNNNNNNGC	1 cut(s)	946
NcoI	CCATGG	1 cut(s)	737
NdeII	GATC	7 cut(s)	286, 463, 505, 751, 998, 1006, 1085
NlaIII	CATG	4 cut(s)	286, 741, 751, 826
NlaIV	GGNNCC	4 cut(s)	324, 411, 753, 771
NmeAIII	GCCGAG	1 cut(s)	625
NmuCI	GTSAC	2 cut(s)	831, 1229
NsiI	ATGCAT	1 cut(s)	958
PaqCI	CACCTGC	1 cut(s)	925
PcsI	WCGNNNNNNNCGW	1 cut(s)	410
PctI	GAATGC	1 cut(s)	1183
PfeI	GAWTC	6 cut(s)	117, 202, 377, 623, 986, 1103
PflMI	CCANNNNNTGG	1 cut(s)	743
PfoI	TCCNGGA	1 cut(s)	989
PkrI	GCNGC	2 cut(s)	316, 874
PleI	GAGTC	2 cut(s)	462, 1037
PpsI	GAGTC	2 cut(s)	462, 1037
PpuMI	RGGWCCY	1 cut(s)	409
Psp5II	RGGWCCY	1 cut(s)	409
Psp6I	CCWGG	3 cut(s)	380, 989, 1081
PspGI	CCWGG	3 cut(s)	380, 989, 1081
PspN4I	GGNNCC	4 cut(s)	324, 411, 753, 771
PspPI	GGNCC	3 cut(s)	409, 516, 812
PspPPI	RGGWCCY	1 cut(s)	409
PstI	CTGCAG	1 cut(s)	1117
PstNI	CAGNNNCTG	2 cut(s)	721, 917
PsuI	RGATCY	3 cut(s)	505, 751, 1085
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	933
RsaNI	GTAC	1 cut(s)	932
SaqAI	TTAA	5 cut(s)	50, 98, 677, 1074, 1119
SatI	GCNGC	2 cut(s)	315, 873
Sau3AI	GATC	7 cut(s)	286, 463, 505, 751, 998, 1006, 1085
Sau96I	GGNCC	3 cut(s)	409, 516, 812
SchI	GAGTC	2 cut(s)	462, 1037
ScrFI	CCNGG	3 cut(s)	382, 991, 1083
SfaNI	GCATC	4 cut(s)	680, 965, 1068, 1157
SfcI	CTRYAG	1 cut(s)	1113
SinI	GGWCC	1 cut(s)	409
SmlI	CTYRAG	2 cut(s)	1073, 1194
SmoI	CTYRAG	2 cut(s)	1073, 1194
Sse9I	AATT	9 cut(s)	45, 65, 95, 185, 224, 233, 267, 552, 816
SsiI	CCGC	3 cut(s)	445, 576, 947
SspMI	CTAG	1 cut(s)	257
StyD4I	CCNGG	3 cut(s)	380, 989, 1081
StyI	CCWWGG	1 cut(s)	737
TaiI	ACGT	1 cut(s)	1236
TaqI	TCGA	1 cut(s)	466
TasI	AATT	9 cut(s)	45, 65, 95, 185, 224, 233, 267, 552, 816
TatI	WGTACW	1 cut(s)	931
TfiI	GAWTC	6 cut(s)	117, 202, 377, 623, 986, 1103
Tru1I	TTAA	5 cut(s)	50, 98, 677, 1074, 1119
Tru9I	TTAA	5 cut(s)	50, 98, 677, 1074, 1119
TscAI	CASTG	2 cut(s)	246, 1030
TseFI	GTSAC	2 cut(s)	831, 1229
TseI	GCWGC	2 cut(s)	314, 872
Tsp45I	GTSAC	2 cut(s)	831, 1229
TspDTI	ATGAA	2 cut(s)	636, 1095
TspGWI	ACGGA	1 cut(s)	949
TspRI	CASTG	2 cut(s)	246, 1030
Van91I	CCANNNNNTGG	1 cut(s)	743
Vha464I	CTTAAG	1 cut(s)	1073
VpaK11BI	GGWCC	1 cut(s)	409
XapI	RAATTY	1 cut(s)	65
XspI	CTAG	1 cut(s)	257
ZraI	GACGTC	1 cut(s)	1234
Zsp2I	ATGCAT	1 cut(s)	958

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.