Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001822

Physical Location & Seq

Genomic Coordinates Reverse (-)

34566514 .. 34569616

Gene Structure 3103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00242190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTTCCCTTGGGGTGCTGTGGATCACTCGGTTGTAATGGCCCCACCTTCATATCCATTTCCTATGCCAATGCCAATGCCTCCAGGGTCAATTCCCATGCATCCCCATATGCAGCCATACCCTTATTTCAGAAATCAAAATCCCGGGGTCATTCCTAACCCCTGTTCAACTTTTGTTCCATATATCACCCCTAATACTCTGGTTGAACAGCAGCCCACCCCGTATGTATCTCCAGTTGTGCATCCAGCAACTCAGTCTCATGTTTCAGTCAAACAAGATTCCAGAAACAAATCATCTGGGACAAGTAGAATTGACAAAAGTGAAGATTCAAATGATGTCACAACAGAACTAGAACTGAAGACACCAGGGTCAACAGCTGATCAGGAATTATCACCAGTACAAAGAAAATCGCAGAAGTCAGCAAGGAAAGAACTTAAGGTTACAGAAGGGACTTCTTCAAGTAGATGTTCGTCTTCTCATAGTGCACAGGGTAGCTCATCTAACAGTGTAGTGGGTGGCAGAAAGGATGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

178

Amino Acids

19.35

Weight (kDa)

7.01

Isoelectric Point (pI)

60.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19860 AT3G19860 AT3G19860
fragaria_vesca	FvH4_1g11770 FvH4_2g02000 FvH4_2g02000 FvH4_2g02000
malus_domestica	MD02G1132000.v1.1 MD05G1115800.v1.1 MD15G1245200.v1.1
prunus_persica	Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.7G168500_v2.0.a1 Prupe.8G160700_v2.0.a1
pyrus_communis	pycom02g10290 pycom05g11010 pycom15g21570
rosa_chinensis	RchiOBHm_Chr2g0099391 RchiOBHm_Chr6g0245181
rosa_laevigata	RLG00000015318 RLG00000016878
rosa_multiflora	Rmu_co8372605.1_g000001 Rmu_sc0001288.1_g000004 Rmu_sc0002487.1_g000008 Rmu_sc0027529.1_g000004
rosa_roxburghii	Rroxscaffold_2G00143110 Rroxscaffold_3G00242190 Rroxscaffold_7G00215380
rosa_rugosa	Rorug02G0079200 Rorug02G0079300 Rorug02G0079400 Rorug05G0512600 Rorug05G0512700 Rorug05G0512800.1
rosa_samantha	Rh2AG129100 Rh2BG132100 Rh2CG132900 Rh2DG133100 Rh6AG027700 Rh6BG023800 Rh6CG022200 Rh6DG022300
rosa_wichuraiana	Rw2G009940 Rw6G002340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	367
AclWI	GGATC	1 cut(s)	30
AcuI	CTGAAG	1 cut(s)	377
AfaI	GTAC	1 cut(s)	399
AflII	CTTAAG	1 cut(s)	434
AgsI	TTSAA	4 cut(s)	168, 206, 330, 459
AjnI	CCWGG	2 cut(s)	82, 364
AluBI	AGCT	2 cut(s)	377, 495
AluI	AGCT	2 cut(s)	377, 495
Alw21I	GWGCWC	1 cut(s)	487
Alw26I	GTCTC	1 cut(s)	261
Alw44I	GTGCAC	1 cut(s)	483
AlwI	GGATC	1 cut(s)	30
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	1 cut(s)	39
ApaLI	GTGCAC	1 cut(s)	483
ApeKI	GCWGC	2 cut(s)	112, 211
AspS9I	GGNCC	1 cut(s)	40
AsuC2I	CCSGG	2 cut(s)	144, 145
AsuHPI	GGTGA	2 cut(s)	178, 384
AvaI	CYCGRG	1 cut(s)	143
BaeGI	GKGCMC	1 cut(s)	487
BbsI	GAAGAC	2 cut(s)	365, 465
Bbv12I	GWGCWC	1 cut(s)	487
BbvI	GCAGC	2 cut(s)	124, 223
BciT130I	CCWGG	2 cut(s)	84, 366
BclI	TGATCA	1 cut(s)	379
BcnI	CCSGG	2 cut(s)	144, 145
BcoDI	GTCTC	1 cut(s)	261
BfaI	CTAG	1 cut(s)	350
BfrI	CTTAAG	1 cut(s)	434
BisI	GCNGC	2 cut(s)	113, 212
BlsI	GCNGC	2 cut(s)	114, 213
Bme1390I	CCNGG	4 cut(s)	84, 144, 145, 366
BmeT110I	CYCGRG	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	4 cut(s)	84, 144, 145, 366
BmsI	GCATC	2 cut(s)	109, 250
BpiI	GAAGAC	2 cut(s)	365, 465
BpmI	CTGGAG	2 cut(s)	66, 216
BpuMI	CCSGG	2 cut(s)	144, 145
BsaJI	CCNNGG	5 cut(s)	8, 83, 143, 144, 365
Bse1I	ACTGG	2 cut(s)	233, 395
BseBI	CCWGG	2 cut(s)	84, 366
BseDI	CCNNGG	5 cut(s)	8, 83, 143, 144, 365
BseGI	GGATG	3 cut(s)	100, 241, 532
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	2 cut(s)	233, 395
BseSI	GKGCMC	1 cut(s)	487
BseXI	GCAGC	2 cut(s)	124, 223
BshFI	GGCC	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	487
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	144
BslFI	GGGAC	2 cut(s)	313, 463
BsmAI	GTCTC	1 cut(s)	261
BsmFI	GGGAC	2 cut(s)	313, 463
BsnI	GGCC	1 cut(s)	41
BsoBI	CYCGRG	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	487
Bsp143I	GATC	2 cut(s)	22, 379
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	42
BspPI	GGATC	1 cut(s)	30
BspTI	CTTAAG	1 cut(s)	434
BsrI	ACTGG	2 cut(s)	233, 395
BssECI	CCNNGG	5 cut(s)	8, 83, 143, 144, 365
BssMI	GATC	2 cut(s)	22, 379
BssT1I	CCWWGG	1 cut(s)	8
Bst2UI	CCWGG	2 cut(s)	84, 366
Bst4CI	ACNGT	1 cut(s)	506
BstAFI	CTTAAG	1 cut(s)	434
BstDEI	CTNAG	1 cut(s)	252
BstF5I	GGATG	3 cut(s)	100, 241, 532
BstKTI	GATC	2 cut(s)	25, 382
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	2 cut(s)	22, 379
BstNI	CCWGG	2 cut(s)	84, 366
BstSCI	CCNGG	4 cut(s)	82, 142, 143, 364
BstSLI	GKGCMC	1 cut(s)	487
BstV1I	GCAGC	2 cut(s)	124, 223
BstV2I	GAAGAC	2 cut(s)	365, 465
BsuRI	GGCC	1 cut(s)	41
BtsCI	GGATG	3 cut(s)	100, 241, 532
BtsIMutI	CAGTG	1 cut(s)	511
Cfr13I	GGNCC	1 cut(s)	40
Cfr9I	CCCGGG	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	398
CviAII	CATG	2 cut(s)	97, 260
CviJI	RGCY	5 cut(s)	41, 115, 214, 377, 495
CviKI_1	RGCY	5 cut(s)	41, 115, 214, 377, 495
CviQI	GTAC	1 cut(s)	398
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	2 cut(s)	24, 381
DpnII	GATC	2 cut(s)	22, 379
DrdI	GACNNNNNNGTC	1 cut(s)	367
DseDI	GACNNNNNNGTC	1 cut(s)	367
Eco130I	CCWWGG	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	377
Eco88I	CYCGRG	1 cut(s)	143
EcoRII	CCWGG	2 cut(s)	82, 364
EcoT14I	CCWWGG	1 cut(s)	8
EcoT22I	ATGCAT	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	8
FaeI	CATG	2 cut(s)	100, 263
FaqI	GGGAC	2 cut(s)	313, 463
FatI	CATG	2 cut(s)	96, 259
FauNDI	CATATG	1 cut(s)	108
FbaI	TGATCA	1 cut(s)	379
Fnu4HI	GCNGC	2 cut(s)	113, 212
FokI	GGATG	2 cut(s)	87, 228
Fsp4HI	GCNGC	2 cut(s)	113, 212
FspBI	CTAG	1 cut(s)	350
GluI	GCNGC	2 cut(s)	113, 212
GsuI	CTGGAG	2 cut(s)	66, 216
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	1 cut(s)	144
Hin1II	CATG	2 cut(s)	100, 263
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
HinfI	GANTC	2 cut(s)	278, 326
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	2 cut(s)	178, 384
Hpy166II	GTNNAC	2 cut(s)	372, 485
Hpy188I	TCNGA	1 cut(s)	131
Hpy188III	TCNNGA	2 cut(s)	282, 383
Hpy8I	GTNNAC	2 cut(s)	372, 485
HpyAV	CCTTC	2 cut(s)	57, 440
HpyCH4III	ACNGT	1 cut(s)	506
HpyCH4V	TGCA	4 cut(s)	100, 112, 241, 485
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	2 cut(s)	100, 263
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	2 cut(s)	22, 379
Lsp1109I	GCAGC	2 cut(s)	124, 223
LweI	GCATC	2 cut(s)	109, 250
MaeI	CTAG	1 cut(s)	350
MaeIII	GTNAC	2 cut(s)	337, 439
MalI	GATC	2 cut(s)	24, 381
MboI	GATC	2 cut(s)	22, 379
MboII	GAAGA	4 cut(s)	335, 370, 447, 465
MhlI	GDGCHC	1 cut(s)	487
MluCI	AATT	3 cut(s)	90, 309, 386
MnlI	CCTC	1 cut(s)	90
Mph1103I	ATGCAT	1 cut(s)	102
MseI	TTAA	1 cut(s)	435
MspA1I	CMGCKG	1 cut(s)	377
MspCI	CTTAAG	1 cut(s)	434
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	4 cut(s)	84, 144, 145, 366
MvaI	CCWGG	2 cut(s)	84, 366
NciI	CCSGG	2 cut(s)	144, 145
NdeI	CATATG	1 cut(s)	108
NdeII	GATC	2 cut(s)	22, 379
NlaIII	CATG	2 cut(s)	100, 263
NlaIV	GGNNCC	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	337
NsiI	ATGCAT	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	278, 326
PkrI	GCNGC	2 cut(s)	114, 213
Psp6I	CCWGG	2 cut(s)	82, 364
PspGI	CCWGG	2 cut(s)	82, 364
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	1 cut(s)	40
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	1 cut(s)	399
RsaNI	GTAC	1 cut(s)	398
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	2 cut(s)	113, 212
Sau3AI	GATC	2 cut(s)	22, 379
Sau96I	GGNCC	1 cut(s)	40
ScrFI	CCNGG	4 cut(s)	84, 144, 145, 366
SduI	GDGCHC	1 cut(s)	487
SetI	ASST	4 cut(s)	49, 379, 441, 497
SfaNI	GCATC	2 cut(s)	109, 250
SmaI	CCCGGG	1 cut(s)	145
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	3 cut(s)	90, 309, 386
SspMI	CTAG	1 cut(s)	350
StyD4I	CCNGG	4 cut(s)	82, 142, 143, 364
StyI	CCWWGG	1 cut(s)	8
TaaI	ACNGT	1 cut(s)	506
TasI	AATT	3 cut(s)	90, 309, 386
TatI	WGTACW	1 cut(s)	397
TfiI	GAWTC	2 cut(s)	278, 326
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TscAI	CASTG	1 cut(s)	511
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	2 cut(s)	112, 211
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	1 cut(s)	39
TspMI	CCCGGG	1 cut(s)	143
TspRI	CASTG	1 cut(s)	511
Vha464I	CTTAAG	1 cut(s)	434
VneI	GTGCAC	1 cut(s)	483
XmaI	CCCGGG	1 cut(s)	143
XspI	CTAG	1 cut(s)	350
Zsp2I	ATGCAT	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.