AT3G21360

Clavaminate synthase-like protein At3g21360

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005847
Physical Location & Seq
Forward (+)
7522804 .. 7524580
1777 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G21360.1

Sequence Viewer

Length: 993 bp
ATGGCGGAACTGTTGTTGGTGGAAACTCCAATCCCACAGCAAAAGCACTACGAATCCAAACCATTCCCGGCGGTGATATCACCACCGTCTGCTTCGATTCCAATTCCTGCTCTGTCTCTCCCACTATTCACTCAAACTATCAAAACTCAGAAACACTATCTCGATTCTCTCTTGCACGAATCCGGAGCAGTGCTATTCAGAGGTTTTCCGGTGAATTCCGCCGATGATTTCAACGACGTCGTTGAAGCTTTCGGTTTCGATGAGCTTCCTTACGTCGGAGGCGCTGCTCCTCGCACTAGCGTCGTCGGTCGTGTCTTCACTGCTAATGAATCTCCTCCTGATCAGAAGATTCCTTTTCACCACGAGATGGCTCAGGTTCGTGAGTTTCCATCAAAGTTGTTCTTTTACTGTGAGATTGAGCCTAAGTGTGGTGGAGAGACTCCAATTGTGTTGAGTCATGTTGTGTATGAGAGAATGAAAGATAAACATCCAGAGTTTGTTCAGAGATTAGAGGAACATGGTTTGCTTTATGTTAGGGTTTTAGGTGAAGATGATGATCCTTCATCTCCCATTGGACGTGGTTGGAAATCTACATTCTTAACCCATGACAAGAACCTTGCTGAGCAAAGGGCGGTTGATTTGGGAATGAAACTGGAATGGACAGAGGATGGTGGAGCCAAGACGGTAATGGGTCCGATTCCGGCTATCAAATATGACGAGTCGAGAAACCGTAAAGTATGGTTTAACAGCATGGTAGCTGCTTATACGGGATGGGAGGATAAGCGGAATGATCCAAGAAAGGCTGTGACTTTTGGGGATGGAAAGCCTTTACCTGCGGATATAGTCCATGATTGTCTTAGGATTCTTGAAGAGGAATGTGTTGCTGTTCCGTGGCAGAGAGGAGATGTTTTGCTTATAGATAACTGGGCGGTTCTTCATTCTCGAAGACCGTTTGATCCTCCTCGTCGAGTTCTTGCATCACTCTGCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauD

Protein Analysis

330

Amino Acids

37.21

Weight (kDa)

5.7

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauD PF02668 38 - 325 3.8e-38 Taurine catabolism dioxygenase TauD, TfdA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 240
Acc36I ACCTGC 1 cut(s) 841
AccB7I CCANNNNNTGG 1 cut(s) 367
AccIII TCCGGA 1 cut(s) 182
AciI CCGC 7 cut(s) 5, 71, 219, 632, 784, 836, 929
AclWI GGATC 3 cut(s) 551, 785, 950
AcsI RAATTY 1 cut(s) 214
AcyI GRCGYC 1 cut(s) 237
AfiI CCNNNNNNNGG 3 cut(s) 275, 367, 428
AgsI TTSAA 3 cut(s) 232, 245, 869
AjiI CACGTC 1 cut(s) 578
AluBI AGCT 3 cut(s) 248, 265, 758
AluI AGCT 3 cut(s) 248, 265, 758
Alw26I GTCTC 2 cut(s) 120, 431
AlwI GGATC 3 cut(s) 551, 785, 950
Aor13HI TCCGGA 1 cut(s) 182
ApeKI GCWGC 2 cut(s) 284, 758
ApoI RAATTY 1 cut(s) 214
AspLEI GCGC 1 cut(s) 284
AspS9I GGNCC 1 cut(s) 692
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 5 cut(s) 72, 85, 223, 350, 557
AvaII GGWCC 1 cut(s) 692
BauI CACGAG 1 cut(s) 362
BbsI GAAGAC 2 cut(s) 307, 952
BbvI GCAGC 2 cut(s) 271, 745
BccI CCATC 5 cut(s) 361, 397, 662, 765, 812
BcgI CGANNNNNNTGC 2 cut(s) 283, 317
BclI TGATCA 1 cut(s) 340
BcnI CCSGG 1 cut(s) 68
BcoDI GTCTC 2 cut(s) 120, 431
BfaI CTAG 1 cut(s) 297
BfoI RGCGCY 1 cut(s) 285
BfuAI ACCTGC 1 cut(s) 841
BisI GCNGC 2 cut(s) 285, 759
BlpI GCTNAGC 1 cut(s) 621
BlsI GCNGC 2 cut(s) 286, 760
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 1 cut(s) 692
BmgBI CACGTC 1 cut(s) 578
BmgT120I GGNCC 1 cut(s) 692
BmiI GGNNCC 2 cut(s) 676, 693
BmrFI CCNGG 1 cut(s) 68
BmrI ACTGGG 1 cut(s) 934
BmsI GCATC 1 cut(s) 986
BmuI ACTGGG 1 cut(s) 934
BpiI GAAGAC 2 cut(s) 307, 952
Bpu10I CCTNAGC 1 cut(s) 372
Bpu1102I GCTNAGC 1 cut(s) 621
BpuMI CCSGG 1 cut(s) 68
BsaBI GATNNNNATC 2 cut(s) 486, 555
BsaHI GRCGYC 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 890
BsaWI WCCGGW 2 cut(s) 182, 208
Bsc4I CCNNNNNNNGG 3 cut(s) 275, 367, 428
Bse1I ACTGG 2 cut(s) 657, 929
Bse8I GATNNNNATC 2 cut(s) 486, 555
BseAI TCCGGA 1 cut(s) 182
BseDI CCNNGG 1 cut(s) 890
BseGI GGATG 4 cut(s) 487, 673, 776, 823
BseJI GATNNNNATC 2 cut(s) 486, 555
BseLI CCNNNNNNNGG 3 cut(s) 275, 367, 428
BseMII CTCAG 3 cut(s) 161, 386, 612
BseNI ACTGG 2 cut(s) 657, 929
BseRI GAGGAG 4 cut(s) 279, 324, 915, 951
BseXI GCAGC 2 cut(s) 271, 745
Bsh1285I CGRYCG 1 cut(s) 310
BsiEI CGRYCG 1 cut(s) 310
BsiSI CCGG 4 cut(s) 68, 183, 209, 701
BslI CCNNNNNNNGG 3 cut(s) 275, 367, 428
BsmAI GTCTC 2 cut(s) 120, 431
Bsp13I TCCGGA 1 cut(s) 182
Bsp143I GATC 4 cut(s) 340, 556, 790, 955
Bsp1720I GCTNAGC 1 cut(s) 621
BspACI CCGC 7 cut(s) 5, 71, 219, 632, 784, 836, 929
BspCNI CTCAG 3 cut(s) 160, 385, 613
BspEI TCCGGA 1 cut(s) 182
BspLI GGNNCC 2 cut(s) 676, 693
BspMI ACCTGC 1 cut(s) 841
BspPI GGATC 3 cut(s) 551, 785, 950
BsrI ACTGG 2 cut(s) 657, 929
BssECI CCNNGG 1 cut(s) 890
BssMI GATC 4 cut(s) 340, 556, 790, 955
BssNI GRCGYC 1 cut(s) 237
BssSI CACGAG 1 cut(s) 362
Bst2BI CACGAG 1 cut(s) 362
Bst4CI ACNGT 6 cut(s) 12, 87, 410, 685, 731, 951
Bst6I CTCTTC 1 cut(s) 864
BstACI GRCGYC 1 cut(s) 237
BstDEI CTNAG 5 cut(s) 147, 372, 423, 621, 857
BstDSI CCRYGG 1 cut(s) 890
BstF5I GGATG 4 cut(s) 487, 673, 776, 823
BstH2I RGCGCY 1 cut(s) 285
BstHHI GCGC 1 cut(s) 284
BstKTI GATC 4 cut(s) 343, 559, 793, 958
BstMAI GTCTC 2 cut(s) 120, 431
BstMBI GATC 4 cut(s) 340, 556, 790, 955
BstMCI CGRYCG 1 cut(s) 310
BstSCI CCNGG 1 cut(s) 66
BstV1I GCAGC 2 cut(s) 271, 745
BstV2I GAAGAC 2 cut(s) 307, 952
BtgI CCRYGG 1 cut(s) 890
BtrI CACGTC 1 cut(s) 578
BtsCI GGATG 4 cut(s) 487, 673, 776, 823
BtsI GCAGTG 2 cut(s) 195, 318
BtsIMutI CAGTG 2 cut(s) 195, 318
BveI ACCTGC 1 cut(s) 841
CfoI GCGC 1 cut(s) 284
Cfr13I GGNCC 1 cut(s) 692
CseI GACGC 1 cut(s) 289
CviAII CATG 5 cut(s) 458, 518, 605, 751, 848
CviJI RGCY 9 cut(s) 248, 265, 371, 421, 677, 704, 758, 803, 826
CviKI_1 RGCY 9 cut(s) 248, 265, 371, 421, 677, 704, 758, 803, 826
DdeI CTNAG 5 cut(s) 147, 372, 423, 621, 857
DpnI GATC 4 cut(s) 342, 558, 792, 957
DpnII GATC 4 cut(s) 340, 556, 790, 955
Eam1104I CTCTTC 1 cut(s) 864
EarI CTCTTC 1 cut(s) 864
EciI GGCGGA 2 cut(s) 20, 208
Eco32I GATATC 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 692
EcoRI GAATTC 1 cut(s) 214
EcoRV GATATC 1 cut(s) 78
FaeI CATG 5 cut(s) 461, 521, 608, 754, 851
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FatI CATG 5 cut(s) 457, 517, 604, 750, 847
FbaI TGATCA 1 cut(s) 340
Fnu4HI GCNGC 2 cut(s) 285, 759
FokI GGATG 4 cut(s) 474, 680, 783, 830
Fsp4HI GCNGC 2 cut(s) 285, 759
FspBI CTAG 1 cut(s) 297
GlaI GCGC 1 cut(s) 283
GluI GCNGC 2 cut(s) 285, 759
HaeII RGCGCY 1 cut(s) 285
HapII CCGG 4 cut(s) 68, 183, 209, 701
HgaI GACGC 1 cut(s) 289
HhaI GCGC 1 cut(s) 284
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 5 cut(s) 461, 521, 608, 754, 851
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HindIII AAGCTT 1 cut(s) 246
HpaII CCGG 4 cut(s) 68, 183, 209, 701
HphI GGTGA 5 cut(s) 72, 85, 223, 350, 557
Hpy188I TCNGA 6 cut(s) 150, 200, 278, 345, 504, 696
Hpy188III TCNNGA 8 cut(s) 161, 183, 338, 380, 491, 723, 866, 942
Hpy99I CGWCG 6 cut(s) 239, 242, 278, 305, 308, 969
HpyAV CCTTC 1 cut(s) 570
HpyCH4III ACNGT 6 cut(s) 12, 87, 410, 685, 731, 951
HpyCH4IV ACGT 3 cut(s) 237, 273, 577
HpyCH4V TGCA 3 cut(s) 175, 977, 987
HpyF3I CTNAG 5 cut(s) 147, 372, 423, 621, 857
HpySE526I ACGT 3 cut(s) 237, 273, 577
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 5 cut(s) 461, 521, 608, 754, 851
HspAI GCGC 1 cut(s) 282
Kpn2I TCCGGA 1 cut(s) 182
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 4 cut(s) 340, 556, 790, 955
LmnI GCTCC 3 cut(s) 185, 292, 674
Lsp1109I GCAGC 2 cut(s) 271, 745
LweI GCATC 1 cut(s) 986
MaeI CTAG 1 cut(s) 297
MaeII ACGT 3 cut(s) 237, 273, 577
MaeIII GTNAC 1 cut(s) 805
MalI GATC 4 cut(s) 342, 558, 792, 957
MboI GATC 4 cut(s) 340, 556, 790, 955
MboII GAAGA 6 cut(s) 307, 358, 560, 881, 926, 957
MfeI CAATTG 1 cut(s) 444
MluCI AATT 3 cut(s) 102, 214, 444
MlyI GAGTC 3 cut(s) 433, 463, 728
MmeI TCCRAC 2 cut(s) 256, 563
MroI TCCGGA 1 cut(s) 182
MseI TTAA 2 cut(s) 599, 744
MspI CCGG 4 cut(s) 68, 183, 209, 701
MspR9I CCNGG 1 cut(s) 68
MunI CAATTG 1 cut(s) 444
NciI CCSGG 1 cut(s) 68
NdeII GATC 4 cut(s) 340, 556, 790, 955
NlaIII CATG 5 cut(s) 461, 521, 608, 754, 851
NlaIV GGNNCC 2 cut(s) 676, 693
NmuCI GTSAC 1 cut(s) 805
PfeI GAWTC 8 cut(s) 53, 97, 164, 179, 329, 349, 697, 862
PflMI CCANNNNNTGG 1 cut(s) 367
PkrI GCNGC 2 cut(s) 286, 760
PleI GAGTC 3 cut(s) 433, 462, 727
PpsI GAGTC 3 cut(s) 433, 462, 727
PspN4I GGNNCC 2 cut(s) 676, 693
PspPI GGNCC 1 cut(s) 692
SaqAI TTAA 2 cut(s) 599, 744
SatI GCNGC 2 cut(s) 285, 759
Sau3AI GATC 4 cut(s) 340, 556, 790, 955
Sau96I GGNCC 1 cut(s) 692
SchI GAGTC 3 cut(s) 433, 463, 728
ScrFI CCNGG 1 cut(s) 68
SfaNI GCATC 1 cut(s) 986
SinI GGWCC 1 cut(s) 692
Sse9I AATT 3 cut(s) 102, 214, 444
SsiI CCGC 7 cut(s) 5, 71, 219, 632, 784, 836, 929
SspMI CTAG 1 cut(s) 297
StyD4I CCNGG 1 cut(s) 66
TaaI ACNGT 6 cut(s) 12, 87, 410, 685, 731, 951
TaiI ACGT 3 cut(s) 240, 276, 580
TaqI TCGA 6 cut(s) 95, 162, 258, 722, 943, 967
TaqII GACCGA 1 cut(s) 296
TasI AATT 3 cut(s) 102, 214, 444
TfiI GAWTC 8 cut(s) 53, 97, 164, 179, 329, 349, 697, 862
Tru1I TTAA 2 cut(s) 599, 744
Tru9I TTAA 2 cut(s) 599, 744
TscAI CASTG 2 cut(s) 195, 325
TseFI GTSAC 1 cut(s) 805
TseI GCWGC 2 cut(s) 284, 758
Tsp45I GTSAC 1 cut(s) 805
TspDTI ATGAA 5 cut(s) 342, 491, 552, 662, 926
TspGWI ACGGA 1 cut(s) 879
TspRI CASTG 2 cut(s) 195, 325
Van91I CCANNNNNTGG 1 cut(s) 367
VpaK11BI GGWCC 1 cut(s) 692
XapI RAATTY 1 cut(s) 214
XcmI CCANNNNNNNNNTGG 1 cut(s) 685
XspI CTAG 1 cut(s) 297
ZraI GACGTC 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.