Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002490.1

Orthogroup ID

OG0005847

Physical Location & Seq

Genomic Coordinates Forward (+)

125304 .. 126463

Gene Structure 1160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002490.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

atggcaggaactctggtgcaaactcaaatcccacagcaaaagctctacgacggagttcagttcccggcggttgtatctccgaaccctgcggttcccttcactctctctgctttgacccaaaccatcggagcccaaagaccgtaccttgaggcccagctccggcaatccggggcagtactcctcaggggctttcccgtcaattcagcctccgacttcaacgacgtcgttgaggccttcggcttcgaggagcttccctatgttggcggagccgcccctcggaccaacgtcgtgggtcgggtttttaccgccaatgagtccccgcccgaccagaagattccgtttcaccacgaaatggctcaggttccagagtttccctccaagttgttctttttctgtgaagtggagcctggaagtgggggagaaactcccattgttctgagtcacattgtgtatgagaggatgaaattgaagtacccggaattcgtcgacaaattggaagagcatggattgttgtatactcgggttttaggcgaaggcgatgacccttcttctccgattggccgtggctggaagtctacattcttgaccaaagataagaacatagctgagcaaagggctgctaagcttggcatgaagttggaatggttggaagatggagtgaaatcaataatggggccaatcccggccgtcaaatacgacagcacaaggcagcgtaagacttggttcaacagcatggtagctgcatacacaggctgggaagatgcaaggaatgatcctgtaaaggctgttacctttggcaatggcaacccattgcccgcggatgtcatctacgactgcttgaagattcttgaggaggaaagtgttgccattccttggcagaagggtgatgttttgctgttggataatttggctgtccttcactctaggaaatcgttcactccgcctcgcagggtgctagcttcactttgcaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TauD

Protein Analysis

324

Amino Acids

35.88

Weight (kDa)

5.83

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21360
fragaria_vesca	FvH4_6g32420 FvH4_6g32420
malus_domestica	MD09G1202600.v1.1 MD10G1294600.v1.1 MD10G1294700.v1.1 MD17G1183800.v1.1
prunus_persica	Prupe.3G058800_v2.0.a1
pyrus_communis	pycom10g24660 pycom17g19320
rosa_chinensis	RchiOBHm_Chr2g0140561 RchiOBHm_Chr2g0140571
rosa_laevigata	RLG00000019878
rosa_multiflora	Rmu_sc0002490.1_g000026 Rmu_sc0002490.1_g000028 Rmu_ssc0000213.1_g000122 Rmu_ssc0000213.1_g000126
rosa_roxburghii	Rroxscaffold_153G00436630 Rroxscaffold_2G00104670
rosa_rugosa	Rorug02G0363600
rosa_samantha	Rh2AG414600 Rh2AG414800 Rh2BG424500 Rh2BG424700 Rh2CG401000 Rh2CG401200 Rh2DG434600
rosa_wichuraiana	Rw2G033970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	225
AccB7I	CCANNNNNTGG	2 cut(s)	352, 873
AccI	GTMKAC	3 cut(s)	486, 515, 575
AccII	CGCG	1 cut(s)	818
AciI	CCGC	9 cut(s)	68, 89, 264, 270, 306, 320, 816, 818, 941
AclWI	GGATC	1 cut(s)	767
AcoI	YGGCCR	2 cut(s)	559, 684
AcsI	RAATTY	1 cut(s)	479
AcyI	GRCGYC	1 cut(s)	222
AdeI	CACNNNGTG	1 cut(s)	448
AfaI	GTAC	3 cut(s)	143, 177, 473
AfiI	CCNNNNNNNGG	6 cut(s)	159, 260, 276, 352, 413, 873
AgsI	TTSAA	4 cut(s)	217, 469, 727, 841
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	7 cut(s)	43, 157, 250, 605, 625, 740, 959
AluI	AGCT	7 cut(s)	43, 157, 250, 605, 625, 740, 959
AlwI	GGATC	1 cut(s)	767
Ama87I	CYCGRG	1 cut(s)	519
AoxI	GGCC	5 cut(s)	150, 231, 559, 674, 684
ApeKI	GCWGC	3 cut(s)	617, 709, 740
ApoI	RAATTY	1 cut(s)	479
Asp700I	GAANNNNTTC	1 cut(s)	932
AspS9I	GGNCC	3 cut(s)	151, 279, 674
AsuC2I	CCSGG	4 cut(s)	65, 169, 476, 683
AsuHPI	GGTGA	2 cut(s)	335, 896
AsuNHI	GCTAGC	1 cut(s)	955
AvaI	CYCGRG	1 cut(s)	519
AvaII	GGWCC	1 cut(s)	279
AxyI	CCTNAGG	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	133
BbvI	GCAGC	3 cut(s)	604, 721, 727
BccI	CCATC	2 cut(s)	131, 647
BceAI	ACGGC	2 cut(s)	546, 671
BciT130I	CCWGG	1 cut(s)	408
BcnI	CCSGG	4 cut(s)	65, 169, 476, 683
BfaI	CTAG	2 cut(s)	924, 956
BisI	GCNGC	4 cut(s)	270, 618, 710, 741
BlpI	GCTNAGC	2 cut(s)	606, 621
BlsI	GCNGC	4 cut(s)	271, 619, 711, 742
BmcAI	AGTACT	1 cut(s)	177
Bme1390I	CCNGG	5 cut(s)	65, 169, 408, 476, 683
Bme18I	GGWCC	1 cut(s)	279
BmeT110I	CYCGRG	1 cut(s)	519
BmgT120I	GGNCC	3 cut(s)	151, 279, 674
BmiI	GGNNCC	6 cut(s)	93, 130, 268, 363, 405, 675
BmrFI	CCNGG	5 cut(s)	65, 169, 408, 476, 683
BmsI	GCATC	1 cut(s)	751
BmtI	GCTAGC	1 cut(s)	959
BoxI	GACNNNNGTC	1 cut(s)	284
BplI	GAGNNNNNCTC	2 cut(s)	359, 391
Bpu10I	CCTNAGC	1 cut(s)	357
Bpu1102I	GCTNAGC	2 cut(s)	606, 621
BpuEI	CTTGAG	2 cut(s)	167, 869
BpuMI	CCSGG	4 cut(s)	65, 169, 476, 683
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	5 cut(s)	168, 275, 562, 816, 872
Bsc4I	CCNNNNNNNGG	6 cut(s)	159, 260, 276, 352, 413, 873
Bse21I	CCTNAGG	1 cut(s)	182
Bse3DI	GCAATG	2 cut(s)	805, 809
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	5 cut(s)	168, 275, 562, 816, 872
BseGI	GGATG	2 cut(s)	465, 826
BseLI	CCNNNNNNNGG	6 cut(s)	159, 260, 276, 352, 413, 873
BseMI	GCAATG	2 cut(s)	805, 809
BseMII	CTCAG	4 cut(s)	196, 371, 428, 597
BseRI	GAGGAG	3 cut(s)	170, 260, 866
BseX3I	CGGCCG	1 cut(s)	684
BseXI	GCAGC	3 cut(s)	604, 721, 727
BseYI	CCCAGC	2 cut(s)	153, 753
Bsh1236I	CGCG	1 cut(s)	818
Bsh1285I	CGRYCG	1 cut(s)	687
BshFI	GGCC	5 cut(s)	152, 233, 561, 676, 686
BsiEI	CGRYCG	1 cut(s)	687
BsiHKCI	CYCGRG	1 cut(s)	519
BsiSI	CCGG	5 cut(s)	65, 160, 168, 476, 683
BslFI	GGGAC	1 cut(s)	301
BslI	CCNNNNNNNGG	6 cut(s)	159, 260, 276, 352, 413, 873
BsmFI	GGGAC	1 cut(s)	301
BsnI	GGCC	5 cut(s)	152, 233, 561, 676, 686
BsoBI	CYCGRG	1 cut(s)	519
Bsp1286I	GDGCHC	1 cut(s)	133
Bsp143I	GATC	1 cut(s)	772
Bsp1720I	GCTNAGC	2 cut(s)	606, 621
BspACI	CCGC	9 cut(s)	68, 89, 264, 270, 306, 320, 816, 818, 941
BspANI	GGCC	5 cut(s)	152, 233, 561, 676, 686
BspCNI	CTCAG	4 cut(s)	195, 370, 429, 598
BspFNI	CGCG	1 cut(s)	818
BspLI	GGNNCC	6 cut(s)	93, 130, 268, 363, 405, 675
BspOI	GCTAGC	1 cut(s)	959
BspPI	GGATC	1 cut(s)	767
BspQI	GCTCTTC	1 cut(s)	492
BsrDI	GCAATG	2 cut(s)	805, 809
BssECI	CCNNGG	5 cut(s)	168, 275, 562, 816, 872
BssMI	GATC	1 cut(s)	772
BssNAI	GTATAC	1 cut(s)	516
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	872
Bst1107I	GTATAC	1 cut(s)	516
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	1 cut(s)	141
Bst6I	CTCTTC	1 cut(s)	492
BstACI	GRCGYC	1 cut(s)	222
BstC8I	GCNNGC	2 cut(s)	816, 957
BstDEI	CTNAG	5 cut(s)	182, 357, 437, 606, 621
BstDSI	CCRYGG	2 cut(s)	562, 816
BstF5I	GGATG	2 cut(s)	465, 826
BstFNI	CGCG	1 cut(s)	818
BstKTI	GATC	1 cut(s)	775
BstMBI	GATC	1 cut(s)	772
BstMCI	CGRYCG	1 cut(s)	687
BstNI	CCWGG	1 cut(s)	408
BstPAI	GACNNNNGTC	1 cut(s)	284
BstSCI	CCNGG	5 cut(s)	63, 167, 406, 474, 681
BstUI	CGCG	1 cut(s)	818
BstV1I	GCAGC	3 cut(s)	604, 721, 727
BstXI	CCANNNNNNTGG	1 cut(s)	289
BstZ17I	GTATAC	1 cut(s)	516
BstZI	CGGCCG	1 cut(s)	684
Bsu36I	CCTNAGG	1 cut(s)	182
BsuRI	GGCC	5 cut(s)	152, 233, 561, 676, 686
BtgI	CCRYGG	2 cut(s)	562, 816
BtgZI	GCGATG	1 cut(s)	552
BtsCI	GGATG	2 cut(s)	465, 826
Cac8I	GCNNGC	2 cut(s)	816, 957
Cfr13I	GGNCC	3 cut(s)	151, 279, 674
Cfr42I	CCGCGG	1 cut(s)	819
Csp6I	GTAC	3 cut(s)	142, 176, 472
CviAII	CATG	3 cut(s)	503, 631, 733
CviQI	GTAC	3 cut(s)	142, 176, 472
DdeI	CTNAG	5 cut(s)	182, 357, 437, 606, 621
DpnI	GATC	1 cut(s)	774
DpnII	GATC	1 cut(s)	772
DraIII	CACNNNGTG	1 cut(s)	448
EaeI	YGGCCR	2 cut(s)	559, 684
EagI	CGGCCG	1 cut(s)	684
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
EciI	GGCGGA	2 cut(s)	279, 930
EclXI	CGGCCG	1 cut(s)	684
Eco130I	CCWWGG	1 cut(s)	872
Eco147I	AGGCCT	1 cut(s)	233
Eco24I	GRGCYC	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	279
Eco52I	CGGCCG	1 cut(s)	684
Eco81I	CCTNAGG	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	519
EcoRI	GAATTC	1 cut(s)	479
EcoRII	CCWGG	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	872
EcoT38I	GRGCYC	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	872
FaeI	CATG	3 cut(s)	506, 634, 736
FaiI	YATR	8 cut(s)	258, 453, 504, 516, 602, 632, 734, 745
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	3 cut(s)	502, 630, 732
FauI	CCCGC	2 cut(s)	327, 823
FblI	GTMKAC	3 cut(s)	486, 515, 575
Fnu4HI	GCNGC	4 cut(s)	270, 618, 710, 741
FokI	GGATG	2 cut(s)	472, 833
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	4 cut(s)	270, 618, 710, 741
FspBI	CTAG	2 cut(s)	924, 956
GluI	GCNGC	4 cut(s)	270, 618, 710, 741
GsaI	CCCAGC	2 cut(s)	157, 757
HaeIII	GGCC	5 cut(s)	152, 233, 561, 676, 686
HapII	CCGG	5 cut(s)	65, 160, 168, 476, 683
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	3 cut(s)	506, 634, 736
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	4 cut(s)	314, 334, 439, 844
HpaII	CCGG	5 cut(s)	65, 160, 168, 476, 683
HphI	GGTGA	2 cut(s)	335, 896
Hpy166II	GTNNAC	4 cut(s)	487, 516, 576, 936
Hpy188I	TCNGA	6 cut(s)	81, 128, 211, 279, 438, 555
Hpy188III	TCNNGA	3 cut(s)	365, 583, 848
Hpy8I	GTNNAC	4 cut(s)	487, 516, 576, 936
Hpy99I	CGWCG	5 cut(s)	53, 224, 227, 290, 488
HpyAV	CCTTC	6 cut(s)	106, 244, 527, 555, 874, 926
HpyCH4III	ACNGT	1 cut(s)	141
HpyCH4IV	ACGT	2 cut(s)	222, 285
HpyCH4V	TGCA	4 cut(s)	19, 743, 764, 969
HpyF3I	CTNAG	5 cut(s)	182, 357, 437, 606, 621
HpySE526I	ACGT	2 cut(s)	222, 285
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	506, 634, 736
KspI	CCGCGG	1 cut(s)	819
Kzo9I	GATC	1 cut(s)	772
LguI	GCTCTTC	1 cut(s)	492
LmnI	GCTCC	5 cut(s)	128, 162, 247, 266, 403
Lsp1109I	GCAGC	3 cut(s)	604, 721, 727
LweI	GCATC	1 cut(s)	751
MaeI	CTAG	2 cut(s)	924, 956
MaeII	ACGT	2 cut(s)	222, 285
MaeIII	GTNAC	2 cut(s)	440, 787
MalI	GATC	1 cut(s)	774
MboI	GATC	1 cut(s)	772
MboII	GAAGA	6 cut(s)	343, 509, 540, 662, 770, 853
MhlI	GDGCHC	1 cut(s)	133
MluCI	AATT	5 cut(s)	199, 464, 479, 491, 904
MlyI	GAGTC	2 cut(s)	323, 448
MmeI	TCCRAC	4 cut(s)	234, 618, 627, 879
MroXI	GAANNNNTTC	1 cut(s)	932
MspA1I	CMGCKG	1 cut(s)	818
MspI	CCGG	5 cut(s)	65, 160, 168, 476, 683
MspR9I	CCNGG	5 cut(s)	65, 169, 408, 476, 683
MvaI	CCWGG	1 cut(s)	408
MvnI	CGCG	1 cut(s)	818
NciI	CCSGG	4 cut(s)	65, 169, 476, 683
NdeII	GATC	1 cut(s)	772
NheI	GCTAGC	1 cut(s)	955
NlaIII	CATG	3 cut(s)	506, 634, 736
NlaIV	GGNNCC	6 cut(s)	93, 130, 268, 363, 405, 675
NmuCI	GTSAC	1 cut(s)	440
PceI	AGGCCT	1 cut(s)	233
PciSI	GCTCTTC	1 cut(s)	492
PdmI	GAANNNNTTC	1 cut(s)	932
PfeI	GAWTC	2 cut(s)	334, 844
PflMI	CCANNNNNTGG	2 cut(s)	352, 873
PkrI	GCNGC	4 cut(s)	271, 619, 711, 742
PleI	GAGTC	2 cut(s)	322, 447
PpsI	GAGTC	2 cut(s)	322, 447
PshAI	GACNNNNGTC	1 cut(s)	284
Psp6I	CCWGG	1 cut(s)	406
PspFI	CCCAGC	2 cut(s)	153, 753
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	6 cut(s)	93, 130, 268, 363, 405, 675
PspPI	GGNCC	3 cut(s)	151, 279, 674
RsaI	GTAC	3 cut(s)	143, 177, 473
RsaNI	GTAC	3 cut(s)	142, 176, 472
SacII	CCGCGG	1 cut(s)	819
SalI	GTCGAC	1 cut(s)	485
SapI	GCTCTTC	1 cut(s)	492
SatI	GCNGC	4 cut(s)	270, 618, 710, 741
Sau3AI	GATC	1 cut(s)	772
Sau96I	GGNCC	3 cut(s)	151, 279, 674
ScaI	AGTACT	1 cut(s)	177
SchI	GAGTC	2 cut(s)	323, 448
ScrFI	CCNGG	5 cut(s)	65, 169, 408, 476, 683
SduI	GDGCHC	1 cut(s)	133
SfaNI	GCATC	1 cut(s)	751
Sfr303I	CCGCGG	1 cut(s)	819
SgrBI	CCGCGG	1 cut(s)	819
SinI	GGWCC	1 cut(s)	279
SmlI	CTYRAG	2 cut(s)	146, 848
SmoI	CTYRAG	2 cut(s)	146, 848
Sse9I	AATT	5 cut(s)	199, 464, 479, 491, 904
SseBI	AGGCCT	1 cut(s)	233
SsiI	CCGC	9 cut(s)	68, 89, 264, 270, 306, 320, 816, 818, 941
SspMI	CTAG	2 cut(s)	924, 956
StuI	AGGCCT	1 cut(s)	233
StyD4I	CCNGG	5 cut(s)	63, 167, 406, 474, 681
StyI	CCWWGG	1 cut(s)	872
TaaI	ACNGT	1 cut(s)	141
TaiI	ACGT	2 cut(s)	225, 288
TaqI	TCGA	2 cut(s)	243, 486
TasI	AATT	5 cut(s)	199, 464, 479, 491, 904
TatI	WGTACW	1 cut(s)	175
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	2 cut(s)	334, 844
TseFI	GTSAC	1 cut(s)	440
TseI	GCWGC	3 cut(s)	617, 709, 740
Tsp45I	GTSAC	1 cut(s)	440
TspDTI	ATGAA	2 cut(s)	476, 647
TspGWI	ACGGA	2 cut(s)	66, 327
Van91I	CCANNNNNTGG	2 cut(s)	352, 873
VpaK11BI	GGWCC	1 cut(s)	279
XapI	RAATTY	1 cut(s)	479
XmiI	GTMKAC	3 cut(s)	486, 515, 575
XmnI	GAANNNNTTC	1 cut(s)	932
XspI	CTAG	2 cut(s)	924, 956
ZraI	GACGTC	1 cut(s)	223
ZrmI	AGTACT	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.