MD17G1183800.v1.1

Clavaminate synthase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0005847
Physical Location & Seq
Reverse (-)
21705824 .. 21707430
1607 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1183800.v1.1.491

Sequence Viewer

Length: 639 bp
ATGGCTCAGGTATATTCTCATTGCACGGCGCCTGTGGTGTGGTGTTTTTATGACATGTCGTTTCAGGTGCCGGAGTACCCATCCAAGCTGTTTTTCTTCTGTGAAGTGGAGCCTGGAAGTGGGGGAGAAACTCTGATTGTTCTGAGCCACATTGTGTACGAGAGGATGAAAAAGCAGTACCCGGAGTTCGTCGACAAGTTGGAGGAGCACGGGTTGTTATATAACCGGGTTTTGGGCGAAGACGACGATCCTTCTTCTCCAATCTGCCGTGGCTGGAAGGCTGCTAAGCTTGGCATGAAGTTGGAATGGTTGGATGATGGAGTGAAGTCAATCATGAGACCAATCCCTGCCATCAAATATAACAGCACAACGCAGCGCAAGATTTGGTTCAACAGCATGGTGGCAGCATATACCCGCTGGAAAGATGCAAGGAACGACCCTGTAAAGGCCGTCACTTTTGGAGATGGCAGCCCATTGCCTGCGGATATCATCCATGACTGCTTGAAAGTTCTTGAAGAGGAAAGCGTTGCCTTCCCTTGGAGCAGAGGCGATGTTTTAGTGCTCGATAACTTGGCTGTCCTTCACTCCCGGAAATCCTTCGCTCAACCTCGCAGAGTCCTAGCTTCGCTCTGCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauD

Protein Analysis

213

Amino Acids

24.18

Weight (kDa)

6.52

Isoelectric Point (pI)

44.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauD PF02668 18 - 207 4e-21 Taurine catabolism dioxygenase TauD, TfdA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 28, 67
AccI GTMKAC 1 cut(s) 192
AciI CCGC 2 cut(s) 415, 482
AclWI GGATC 1 cut(s) 242
AcyI GRCGYC 1 cut(s) 29
AdeI CACNNNGTG 1 cut(s) 154
AfaI GTAC 3 cut(s) 77, 158, 179
AfiI CCNNNNNNNGG 4 cut(s) 119, 232, 445, 537
AflIII ACRYGT 1 cut(s) 54
AgsI TTSAA 3 cut(s) 391, 505, 515
AjnI CCWGG 1 cut(s) 112
AjuI GAANNNNNNNTTGG 2 cut(s) 77, 109
AluBI AGCT 3 cut(s) 88, 289, 623
AluI AGCT 3 cut(s) 88, 289, 623
Alw21I GWGCWC 2 cut(s) 210, 564
Alw26I GTCTC 1 cut(s) 331
AlwI GGATC 1 cut(s) 242
AoxI GGCC 1 cut(s) 447
ApeKI GCWGC 4 cut(s) 281, 373, 404, 468
Asp700I GAANNNNTTC 1 cut(s) 596
AspLEI GCGC 2 cut(s) 31, 378
AsuC2I CCSGG 3 cut(s) 182, 227, 589
BanI GGYRCC 2 cut(s) 28, 67
BbsI GAAGAC 1 cut(s) 246
Bbv12I GWGCWC 2 cut(s) 210, 564
BbvI GCAGC 4 cut(s) 268, 385, 416, 480
BccI CCATC 4 cut(s) 88, 311, 359, 458
BceAI ACGGC 3 cut(s) 42, 252, 434
BciT130I CCWGG 1 cut(s) 114
BcnI CCSGG 3 cut(s) 182, 227, 589
BcoDI GTCTC 1 cut(s) 331
BfaI CTAG 1 cut(s) 620
BfoI RGCGCY 1 cut(s) 32
BisI GCNGC 4 cut(s) 282, 374, 405, 469
BlpI GCTNAGC 1 cut(s) 285
BlsI GCNGC 4 cut(s) 283, 375, 406, 470
Bme1390I CCNGG 4 cut(s) 114, 182, 227, 589
BmiI GGNNCC 3 cut(s) 30, 69, 111
BmrFI CCNGG 4 cut(s) 114, 182, 227, 589
BmsI GCATC 1 cut(s) 415
BpiI GAAGAC 1 cut(s) 246
Bpu10I CCTNAGC 1 cut(s) 6
Bpu1102I GCTNAGC 1 cut(s) 285
BpuMI CCSGG 3 cut(s) 182, 227, 589
BsaHI GRCGYC 1 cut(s) 29
BsaI GGTCTC 1 cut(s) 331
BsaJI CCNNGG 2 cut(s) 268, 536
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
Bsc4I CCNNNNNNNGG 4 cut(s) 119, 232, 445, 537
Bse3DI GCAATG 2 cut(s) 19, 473
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 2 cut(s) 268, 536
BseGI GGATG 4 cut(s) 80, 171, 319, 489
BseLI CCNNNNNNNGG 4 cut(s) 119, 232, 445, 537
BseMI GCAATG 2 cut(s) 19, 473
BseMII CTCAG 2 cut(s) 20, 134
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 4 cut(s) 268, 385, 416, 480
BshFI GGCC 1 cut(s) 449
BshNI GGYRCC 2 cut(s) 28, 67
BsiHKAI GWGCWC 2 cut(s) 210, 564
BsiSI CCGG 4 cut(s) 71, 182, 226, 589
BslI CCNNNNNNNGG 4 cut(s) 119, 232, 445, 537
BsmAI GTCTC 1 cut(s) 331
BsnI GGCC 1 cut(s) 449
Bso31I GGTCTC 1 cut(s) 331
Bsp1286I GDGCHC 2 cut(s) 210, 564
Bsp143I GATC 1 cut(s) 247
Bsp1720I GCTNAGC 1 cut(s) 285
BspACI CCGC 2 cut(s) 415, 482
BspANI GGCC 1 cut(s) 449
BspCNI CTCAG 2 cut(s) 19, 135
BspHI TCATGA 1 cut(s) 333
BspLI GGNNCC 3 cut(s) 30, 69, 111
BspPI GGATC 1 cut(s) 242
BspT107I GGYRCC 2 cut(s) 28, 67
BspTNI GGTCTC 1 cut(s) 331
BsrDI GCAATG 2 cut(s) 19, 473
BssECI CCNNGG 2 cut(s) 268, 536
BssMI GATC 1 cut(s) 247
BssNI GRCGYC 1 cut(s) 29
BssT1I CCWWGG 1 cut(s) 536
Bst2UI CCWGG 1 cut(s) 114
Bst6I CTCTTC 1 cut(s) 510
BstACI GRCGYC 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 480
BstDEI CTNAG 3 cut(s) 6, 143, 285
BstDSI CCRYGG 1 cut(s) 268
BstF5I GGATG 4 cut(s) 80, 171, 319, 489
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 2 cut(s) 31, 378
BstKTI GATC 1 cut(s) 250
BstMAI GTCTC 1 cut(s) 331
BstMBI GATC 1 cut(s) 247
BstNI CCWGG 1 cut(s) 114
BstNSI RCATGY 1 cut(s) 58
BstSCI CCNGG 4 cut(s) 112, 180, 225, 587
BstV1I GCAGC 4 cut(s) 268, 385, 416, 480
BstV2I GAAGAC 1 cut(s) 246
BsuRI GGCC 1 cut(s) 449
BtgI CCRYGG 1 cut(s) 268
BtgZI GCGATG 1 cut(s) 564
BtsCI GGATG 4 cut(s) 80, 171, 319, 489
Cac8I GCNNGC 1 cut(s) 480
CciI TCATGA 1 cut(s) 333
CfoI GCGC 2 cut(s) 31, 378
Csp6I GTAC 3 cut(s) 76, 157, 178
CviAII CATG 5 cut(s) 55, 295, 334, 397, 494
CviQI GTAC 3 cut(s) 76, 157, 178
DdeI CTNAG 3 cut(s) 6, 143, 285
DinI GGCGCC 1 cut(s) 30
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
DraIII CACNNNGTG 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 510
EarI CTCTTC 1 cut(s) 510
Eco130I CCWWGG 1 cut(s) 536
Eco31I GGTCTC 1 cut(s) 331
Eco32I GATATC 1 cut(s) 487
EcoRII CCWGG 1 cut(s) 112
EcoRV GATATC 1 cut(s) 487
EcoT14I CCWWGG 1 cut(s) 536
EgeI GGCGCC 1 cut(s) 30
EheI GGCGCC 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 536
FaeI CATG 5 cut(s) 58, 298, 337, 400, 497
FatI CATG 5 cut(s) 54, 294, 333, 396, 493
FauI CCCGC 1 cut(s) 422
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 4 cut(s) 282, 374, 405, 469
FokI GGATG 4 cut(s) 67, 178, 326, 476
Fsp4HI GCNGC 4 cut(s) 282, 374, 405, 469
FspBI CTAG 1 cut(s) 620
GlaI GCGC 2 cut(s) 30, 377
GluI GCNGC 4 cut(s) 282, 374, 405, 469
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 1 cut(s) 449
HapII CCGG 4 cut(s) 71, 182, 226, 589
HhaI GCGC 2 cut(s) 31, 378
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 5 cut(s) 58, 298, 337, 400, 497
Hin6I GCGC 2 cut(s) 29, 376
HinP1I GCGC 2 cut(s) 29, 376
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HindIII AAGCTT 1 cut(s) 287
HinfI GANTC 1 cut(s) 615
HpaII CCGG 4 cut(s) 71, 182, 226, 589
Hpy166II GTNNAC 2 cut(s) 157, 193
Hpy188I TCNGA 2 cut(s) 135, 144
Hpy188III TCNNGA 2 cut(s) 334, 512
Hpy8I GTNNAC 2 cut(s) 157, 193
Hpy99I CGWCG 2 cut(s) 194, 248
HpyAV CCTTC 5 cut(s) 261, 271, 541, 590, 607
HpyCH4V TGCA 3 cut(s) 24, 428, 633
HpyF3I CTNAG 3 cut(s) 6, 143, 285
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 5 cut(s) 58, 298, 337, 400, 497
HspAI GCGC 2 cut(s) 29, 376
KasI GGCGCC 1 cut(s) 28
Kzo9I GATC 1 cut(s) 247
LmnI GCTCC 3 cut(s) 109, 205, 540
Lsp1109I GCAGC 4 cut(s) 268, 385, 416, 480
LweI GCATC 1 cut(s) 415
MaeI CTAG 1 cut(s) 620
MaeIII GTNAC 1 cut(s) 451
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 4 cut(s) 88, 246, 251, 527
MhlI GDGCHC 2 cut(s) 210, 564
Mly113I GGCGCC 1 cut(s) 29
MlyI GAGTC 1 cut(s) 624
MmeI TCCRAC 3 cut(s) 180, 282, 291
MnlI CCTC 5 cut(s) 156, 196, 511, 539, 618
MroXI GAANNNNTTC 1 cut(s) 596
MspA1I CMGCKG 1 cut(s) 417
MspI CCGG 4 cut(s) 71, 182, 226, 589
MspR9I CCNGG 4 cut(s) 114, 182, 227, 589
MvaI CCWGG 1 cut(s) 114
NarI GGCGCC 1 cut(s) 29
NciI CCSGG 3 cut(s) 182, 227, 589
NdeII GATC 1 cut(s) 247
NlaIII CATG 5 cut(s) 58, 298, 337, 400, 497
NlaIV GGNNCC 3 cut(s) 30, 69, 111
NmuCI GTSAC 1 cut(s) 451
NspI RCATGY 1 cut(s) 58
PagI TCATGA 1 cut(s) 333
PciI ACATGT 1 cut(s) 54
PdmI GAANNNNTTC 1 cut(s) 596
PfoI TCCNGGA 1 cut(s) 587
PkrI GCNGC 4 cut(s) 283, 375, 406, 470
PleI GAGTC 1 cut(s) 623
PluTI GGCGCC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 623
PscI ACATGT 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 3 cut(s) 30, 69, 111
PsrI GAACNNNNNNTAC 2 cut(s) 170, 202
RsaI GTAC 3 cut(s) 77, 158, 179
RsaNI GTAC 3 cut(s) 76, 157, 178
SalI GTCGAC 1 cut(s) 191
SatI GCNGC 4 cut(s) 282, 374, 405, 469
Sau3AI GATC 1 cut(s) 247
SchI GAGTC 1 cut(s) 624
ScrFI CCNGG 4 cut(s) 114, 182, 227, 589
SduI GDGCHC 2 cut(s) 210, 564
SetI ASST 6 cut(s) 12, 69, 90, 291, 610, 625
SfaNI GCATC 1 cut(s) 415
SfoI GGCGCC 1 cut(s) 30
SsiI CCGC 2 cut(s) 415, 482
SspDI GGCGCC 1 cut(s) 28
SspMI CTAG 1 cut(s) 620
StyD4I CCNGG 4 cut(s) 112, 180, 225, 587
StyI CCWWGG 1 cut(s) 536
TaqI TCGA 2 cut(s) 192, 564
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 4 cut(s) 281, 373, 404, 468
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 2 cut(s) 182, 311
XceI RCATGY 1 cut(s) 58
XmiI GTMKAC 1 cut(s) 192
XmnI GAANNNNTTC 1 cut(s) 596
XspI CTAG 1 cut(s) 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.