FvH4_6g32420

Clavaminate synthase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005847
Physical Location & Seq
Forward (+)
25461806 .. 25463505
1700 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g32420.t1

Sequence Viewer

Length: 987 bp
ATGGCAGGGACTTTTGTGCAAGCTCAAATCCCACAGCAGAAGCTCTACGACGGAGTTCGATTCCCGGCGGTTCTATCTCCAAGTCCGGCGGTTCCCTTCACTCTCTCTGCTTTGACCAAAACCATCGAAGCCCAAAGACCGTATCTCGAGGCCCTGCTACGAGAATCCGGGGCCGTACTCTTCAGGGGCTTTCCGCTAAATTCAGCTTCCGACTTCAACGACGTCGTTGAGGCTTTCGGGTTCGAGGAGCTTCCCTATGTTGGCGGAGCCGCCCCGCGGACCAACGTTGTGGGCCGGGTTTTTACCGCTAATGAGTCACCGCCCGACCAGAAGATTCCATTTCACCACGAAATGGCCCATGTATATGCGCATGTGCCAGAGTTTCCCTCCAAGTTGTTCTTTTTCTGTGAAGTGGAGCCTGGAAGTGGAGGAGAAACTCCTATTGTTCTGAGTCACATTGTGTATGAGAGGATGAGAGATAAGTATCCGGAATTTGTCGAGAAATTGGAGGAGCATGGGTTGATATATACTCGGGTTTTAGGCGAAGGAGATGACCCTTCTTCTCCGATTGGCCGTGGCTGGAAGTCTACATTCTTGACCAAAGACAAGGGCATAGCTGAGGAGAGGGCTGCTAAGCTTGGGATGAAGTTAGAATGGTTGGAAGATGGGGTGAAATCAATAATGGGGCCAATCCCGGCCGTCAAATACGACAGCACAAGGCAGAGGAAGATTTGGTTCAACAGCATGGTAGCTGCCTATACGGGCTGGAAAGATGCTAGGAATGATCCTCTGAAGGCTGTTACCTTTGGCGATGGCAATCCGCTGCCCGCGGATGTCATCTACGACTGCTTGAAGATTCTTGAAGAGGAGAGTGTTGCCATTCCTTGGCAGAAAGGTGATGTTTTGCTGTTGGATAATTTGGCTGTCCTTCACTCTCGGAAATCATTCAGTCTGCCTCGCAGAGTGCTAGCTTCACTCTGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauD

Protein Analysis

329

Amino Acids

36.5

Weight (kDa)

5.88

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauD PF02668 32 - 323 8.3e-33 Taurine catabolism dioxygenase TauD, TfdA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 225
Acc16I TGCGCA 1 cut(s) 369
AccB7I CCANNNNNTGG 2 cut(s) 352, 885
AccI GTMKAC 1 cut(s) 587
AccII CGCG 2 cut(s) 277, 830
AccIII TCCGGA 1 cut(s) 487
AclI AACGTT 1 cut(s) 285
AclWI GGATC 1 cut(s) 779
AcoI YGGCCR 2 cut(s) 571, 696
AcsI RAATTY 2 cut(s) 199, 491
AcuI CTGAAG 2 cut(s) 166, 812
AcyI GRCGYC 1 cut(s) 222
AdeI CACNNNGTG 1 cut(s) 460
AfaI GTAC 1 cut(s) 177
AfiI CCNNNNNNNGG 5 cut(s) 260, 276, 352, 425, 885
AgsI TTSAA 4 cut(s) 217, 739, 853, 863
AjnI CCWGG 1 cut(s) 418
AluBI AGCT 8 cut(s) 23, 43, 206, 250, 617, 637, 752, 971
AluI AGCT 8 cut(s) 23, 43, 206, 250, 617, 637, 752, 971
AlwI GGATC 1 cut(s) 779
Ama87I CYCGRG 2 cut(s) 146, 531
Aor13HI TCCGGA 1 cut(s) 487
AoxI GGCC 7 cut(s) 150, 171, 292, 354, 571, 686, 696
ApeKI GCWGC 3 cut(s) 629, 752, 823
ApoI RAATTY 2 cut(s) 199, 491
Asp700I GAANNNNTTC 1 cut(s) 944
AspLEI GCGC 1 cut(s) 370
AspS9I GGNCC 6 cut(s) 151, 171, 279, 292, 355, 686
AsuC2I CCSGG 4 cut(s) 65, 169, 296, 695
AsuHPI GGTGA 4 cut(s) 309, 335, 682, 908
AsuNHI GCTAGC 1 cut(s) 967
AvaI CYCGRG 2 cut(s) 146, 531
AvaII GGWCC 1 cut(s) 279
BbvCI CCTCAGC 1 cut(s) 618
BbvI GCAGC 3 cut(s) 616, 739, 810
BccI CCATC 3 cut(s) 131, 659, 806
BceAI ACGGC 3 cut(s) 158, 558, 683
BciT130I CCWGG 1 cut(s) 420
BciVI GTATCC 1 cut(s) 495
BcnI CCSGG 4 cut(s) 65, 169, 296, 695
BfaI CTAG 2 cut(s) 777, 968
BfuI GTATCC 1 cut(s) 495
BisI GCNGC 4 cut(s) 270, 630, 753, 824
BlpI GCTNAGC 1 cut(s) 633
BlsI GCNGC 4 cut(s) 271, 631, 754, 825
Bme1390I CCNGG 5 cut(s) 65, 169, 296, 420, 695
Bme18I GGWCC 1 cut(s) 279
BmeT110I CYCGRG 2 cut(s) 146, 531
BmgT120I GGNCC 6 cut(s) 151, 171, 279, 292, 355, 686
BmiI GGNNCC 5 cut(s) 93, 172, 268, 417, 687
BmrFI CCNGG 5 cut(s) 65, 169, 296, 420, 695
BmsI GCATC 1 cut(s) 763
BmtI GCTAGC 1 cut(s) 971
BplI GAGNNNNNCTC 2 cut(s) 371, 403
Bpu10I CCTNAGC 1 cut(s) 618
Bpu1102I GCTNAGC 1 cut(s) 633
BpuMI CCSGG 4 cut(s) 65, 169, 296, 695
BsaBI GATNNNNATC 2 cut(s) 483, 816
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 5 cut(s) 168, 275, 574, 828, 884
BsaWI WCCGGW 1 cut(s) 487
BsaXI ACNNNNNCTCC 2 cut(s) 503, 533
Bsc4I CCNNNNNNNGG 5 cut(s) 260, 276, 352, 425, 885
Bse8I GATNNNNATC 2 cut(s) 483, 816
BseAI TCCGGA 1 cut(s) 487
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 5 cut(s) 168, 275, 574, 828, 884
BseGI GGATG 3 cut(s) 477, 648, 838
BseJI GATNNNNATC 2 cut(s) 483, 816
BseLI CCNNNNNNNGG 5 cut(s) 260, 276, 352, 425, 885
BseMII CTCAG 2 cut(s) 440, 609
BseRI GAGGAG 5 cut(s) 260, 444, 524, 635, 881
BseX3I CGGCCG 1 cut(s) 696
BseXI GCAGC 3 cut(s) 616, 739, 810
Bsh1236I CGCG 2 cut(s) 277, 830
Bsh1285I CGRYCG 1 cut(s) 699
BshFI GGCC 7 cut(s) 152, 173, 294, 356, 573, 688, 698
BsiEI CGRYCG 1 cut(s) 699
BsiHKCI CYCGRG 2 cut(s) 146, 531
BsiSI CCGG 6 cut(s) 65, 86, 168, 295, 488, 695
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 5 cut(s) 260, 276, 352, 425, 885
BsmFI GGGAC 1 cut(s) 22
BsnI GGCC 7 cut(s) 152, 173, 294, 356, 573, 688, 698
BsoBI CYCGRG 2 cut(s) 146, 531
Bsp13I TCCGGA 1 cut(s) 487
Bsp143I GATC 1 cut(s) 784
Bsp1720I GCTNAGC 1 cut(s) 633
BspANI GGCC 7 cut(s) 152, 173, 294, 356, 573, 688, 698
BspCNI CTCAG 2 cut(s) 441, 610
BspEI TCCGGA 1 cut(s) 487
BspFNI CGCG 2 cut(s) 277, 830
BspLI GGNNCC 5 cut(s) 93, 172, 268, 417, 687
BspOI GCTAGC 1 cut(s) 971
BspPI GGATC 1 cut(s) 779
BssECI CCNNGG 5 cut(s) 168, 275, 574, 828, 884
BssMI GATC 1 cut(s) 784
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 884
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 1 cut(s) 141
Bst6I CTCTTC 2 cut(s) 185, 858
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 3 cut(s) 21, 828, 969
BstDEI CTNAG 3 cut(s) 449, 618, 633
BstDSI CCRYGG 3 cut(s) 275, 574, 828
BstF5I GGATG 3 cut(s) 477, 648, 838
BstFNI CGCG 2 cut(s) 277, 830
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 1 cut(s) 787
BstMBI GATC 1 cut(s) 784
BstMCI CGRYCG 1 cut(s) 699
BstNI CCWGG 1 cut(s) 420
BstNSI RCATGY 1 cut(s) 374
BstSCI CCNGG 5 cut(s) 63, 167, 294, 418, 693
BstUI CGCG 2 cut(s) 277, 830
BstV1I GCAGC 3 cut(s) 616, 739, 810
BstXI CCANNNNNNTGG 1 cut(s) 289
BstZI CGGCCG 1 cut(s) 696
BsuI GTATCC 1 cut(s) 495
BsuRI GGCC 7 cut(s) 152, 173, 294, 356, 573, 688, 698
BtgI CCRYGG 3 cut(s) 275, 574, 828
BtgZI GCGATG 1 cut(s) 825
BtsCI GGATG 3 cut(s) 477, 648, 838
Cac8I GCNNGC 3 cut(s) 21, 828, 969
CfoI GCGC 1 cut(s) 370
Cfr13I GGNCC 6 cut(s) 151, 171, 279, 292, 355, 686
Cfr42I CCGCGG 2 cut(s) 278, 831
Csp6I GTAC 1 cut(s) 176
CviAII CATG 4 cut(s) 359, 371, 515, 745
CviQI GTAC 1 cut(s) 176
DdeI CTNAG 3 cut(s) 449, 618, 633
DpnI GATC 1 cut(s) 786
DpnII GATC 1 cut(s) 784
DraIII CACNNNGTG 1 cut(s) 460
EaeI YGGCCR 2 cut(s) 571, 696
EagI CGGCCG 1 cut(s) 696
Eam1104I CTCTTC 2 cut(s) 185, 858
EarI CTCTTC 2 cut(s) 185, 858
EciI GGCGGA 1 cut(s) 279
EclXI CGGCCG 1 cut(s) 696
Eco130I CCWWGG 1 cut(s) 884
Eco47I GGWCC 1 cut(s) 279
Eco52I CGGCCG 1 cut(s) 696
Eco57I CTGAAG 2 cut(s) 166, 812
Eco88I CYCGRG 2 cut(s) 146, 531
EcoO109I RGGNCCY 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 418
EcoT14I CCWWGG 1 cut(s) 884
ErhI CCWWGG 1 cut(s) 884
FaeI CATG 4 cut(s) 362, 374, 518, 748
FalI AAGNNNNNCTT 2 cut(s) 383, 415
FaqI GGGAC 1 cut(s) 22
FatI CATG 4 cut(s) 358, 370, 514, 744
FauI CCCGC 2 cut(s) 282, 835
FblI GTMKAC 1 cut(s) 587
Fnu4HI GCNGC 4 cut(s) 270, 630, 753, 824
FokI GGATG 3 cut(s) 484, 655, 845
Fsp4HI GCNGC 4 cut(s) 270, 630, 753, 824
FspAI RTGCGCAY 1 cut(s) 369
FspBI CTAG 2 cut(s) 777, 968
FspI TGCGCA 1 cut(s) 369
GlaI GCGC 1 cut(s) 369
GluI GCNGC 4 cut(s) 270, 630, 753, 824
HaeIII GGCC 7 cut(s) 152, 173, 294, 356, 573, 688, 698
HapII CCGG 6 cut(s) 65, 86, 168, 295, 488, 695
HhaI GCGC 1 cut(s) 370
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 4 cut(s) 362, 374, 518, 748
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HindIII AAGCTT 1 cut(s) 635
HinfI GANTC 6 cut(s) 60, 164, 314, 334, 451, 856
HpaII CCGG 6 cut(s) 65, 86, 168, 295, 488, 695
HphI GGTGA 4 cut(s) 309, 335, 682, 908
Hpy166II GTNNAC 1 cut(s) 588
Hpy188I TCNGA 5 cut(s) 211, 450, 567, 792, 939
Hpy188III TCNNGA 5 cut(s) 146, 488, 499, 595, 860
Hpy8I GTNNAC 1 cut(s) 588
Hpy99I CGWCG 3 cut(s) 53, 224, 227
HpyAV CCTTC 5 cut(s) 106, 539, 567, 787, 938
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4IV ACGT 2 cut(s) 222, 285
HpyCH4V TGCA 2 cut(s) 19, 981
HpyF3I CTNAG 3 cut(s) 449, 618, 633
HpySE526I ACGT 2 cut(s) 222, 285
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 4 cut(s) 362, 374, 518, 748
HspAI GCGC 1 cut(s) 368
Kpn2I TCCGGA 1 cut(s) 487
KspI CCGCGG 2 cut(s) 278, 831
Kzo9I GATC 1 cut(s) 784
LmnI GCTCC 4 cut(s) 247, 266, 415, 511
Lsp1109I GCAGC 3 cut(s) 616, 739, 810
LweI GCATC 1 cut(s) 763
MaeI CTAG 2 cut(s) 777, 968
MaeII ACGT 2 cut(s) 222, 285
MaeIII GTNAC 3 cut(s) 315, 452, 799
MalI GATC 1 cut(s) 786
MboI GATC 1 cut(s) 784
MboII GAAGA 7 cut(s) 172, 343, 552, 674, 739, 865, 875
MluCI AATT 4 cut(s) 199, 491, 503, 916
MlyI GAGTC 2 cut(s) 323, 460
MmeI TCCRAC 3 cut(s) 234, 639, 891
MroI TCCGGA 1 cut(s) 487
MroXI GAANNNNTTC 1 cut(s) 944
MslI CAYNNNNRTG 1 cut(s) 363
MspA1I CMGCKG 3 cut(s) 277, 823, 830
MspI CCGG 6 cut(s) 65, 86, 168, 295, 488, 695
MspR9I CCNGG 5 cut(s) 65, 169, 296, 420, 695
MvaI CCWGG 1 cut(s) 420
MvnI CGCG 2 cut(s) 277, 830
NciI CCSGG 4 cut(s) 65, 169, 296, 695
NdeII GATC 1 cut(s) 784
NheI GCTAGC 1 cut(s) 967
NlaIII CATG 4 cut(s) 362, 374, 518, 748
NlaIV GGNNCC 5 cut(s) 93, 172, 268, 417, 687
NmuCI GTSAC 2 cut(s) 315, 452
NsbI TGCGCA 1 cut(s) 369
NspI RCATGY 1 cut(s) 374
PaeR7I CTCGAG 1 cut(s) 146
PdmI GAANNNNTTC 1 cut(s) 944
PfeI GAWTC 4 cut(s) 60, 164, 334, 856
PflMI CCANNNNNTGG 2 cut(s) 352, 885
PkrI GCNGC 4 cut(s) 271, 631, 754, 825
PleI GAGTC 2 cut(s) 322, 459
PpsI GAGTC 2 cut(s) 322, 459
Psp1406I AACGTT 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 418
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 5 cut(s) 93, 172, 268, 417, 687
PspPI GGNCC 6 cut(s) 151, 171, 279, 292, 355, 686
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
RseI CAYNNNNRTG 1 cut(s) 363
SacII CCGCGG 2 cut(s) 278, 831
SatI GCNGC 4 cut(s) 270, 630, 753, 824
Sau3AI GATC 1 cut(s) 784
Sau96I GGNCC 6 cut(s) 151, 171, 279, 292, 355, 686
SchI GAGTC 2 cut(s) 323, 460
ScrFI CCNGG 5 cut(s) 65, 169, 296, 420, 695
SfaNI GCATC 1 cut(s) 763
Sfr274I CTCGAG 1 cut(s) 146
Sfr303I CCGCGG 2 cut(s) 278, 831
SgrBI CCGCGG 2 cut(s) 278, 831
SinI GGWCC 1 cut(s) 279
SlaI CTCGAG 1 cut(s) 146
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 4 cut(s) 199, 491, 503, 916
SspMI CTAG 2 cut(s) 777, 968
StyD4I CCNGG 5 cut(s) 63, 167, 294, 418, 693
StyI CCWWGG 1 cut(s) 884
TaaI ACNGT 1 cut(s) 141
TaiI ACGT 2 cut(s) 225, 288
TaqI TCGA 5 cut(s) 58, 126, 147, 243, 498
TasI AATT 4 cut(s) 199, 491, 503, 916
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 4 cut(s) 60, 164, 334, 856
TseFI GTSAC 2 cut(s) 315, 452
TseI GCWGC 3 cut(s) 629, 752, 823
Tsp45I GTSAC 2 cut(s) 315, 452
TspDTI ATGAA 1 cut(s) 659
TspGWI ACGGA 1 cut(s) 66
Van91I CCANNNNNTGG 2 cut(s) 352, 885
VpaK11BI GGWCC 1 cut(s) 279
XapI RAATTY 2 cut(s) 199, 491
XceI RCATGY 1 cut(s) 374
XhoI CTCGAG 1 cut(s) 146
XmiI GTMKAC 1 cut(s) 587
XmnI GAANNNNTTC 1 cut(s) 944
XspI CTAG 2 cut(s) 777, 968
ZraI GACGTC 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.