Rh2BG424500

Clavaminate synthase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0005847
Physical Location & Seq
Forward (+)
59825998 .. 59826465
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG424500.1

Sequence Viewer

Length: 468 bp
ATGGCGGTTCTATCTCCAAGTCCTACGGTTCCCTTCACTCTCTCTGCTTTGACCGAAGCCATCGAAGCCCAGACACCCTACCTTGAGTCCCTGCTCCAAAAATCCAGGGCTGTACTTCTCAGGGGATTTCCAATCAATTCAGCCTCCGACTTCAACGATGTCGTTGAGGCTTTCAGCTTCGAGGAGCTTCCCTACGTTGGCAGAGCCGCCTCTCGGACCAATGTTGTGGGTCAGGTTTTTACTGCCACTGAGTCCCCGCCTAATCAGAAGATTTCATTTCACCATGAAATGGCTCAGGTATATTTGCATGATCATTGCATTTTCGTTTCTTTGTTTTCAGTGAAGTGGTTGATAATTGTTATACGACATGTCATTACAGGTGCCAGAGTTTTGCCTCCCTTTTTCTGTGAAGTAGAGCCTGGAAGTGGGGGAGAAACTCCCATTGTTCCTAAGTCACATCGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauD

Protein Analysis

155

Amino Acids

17.08

Weight (kDa)

6.04

Isoelectric Point (pI)

43.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauD PF02668 11 - 109 4.9e-06 Taurine catabolism dioxygenase TauD, TfdA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 380
AccB7I CCANNNNNTGG 1 cut(s) 289
AciI CCGC 3 cut(s) 5, 207, 257
AdeI CACNNNGTG 1 cut(s) 461
AfaI GTAC 1 cut(s) 114
AfiI CCNNNNNNNGG 4 cut(s) 197, 213, 289, 425
AflIII ACRYGT 1 cut(s) 367
AgsI TTSAA 1 cut(s) 154
AjnI CCWGG 2 cut(s) 104, 418
AluBI AGCT 2 cut(s) 177, 187
AluI AGCT 2 cut(s) 177, 187
AspS9I GGNCC 1 cut(s) 216
AsuHPI GGTGA 1 cut(s) 272
AvaII GGWCC 1 cut(s) 216
BanI GGYRCC 1 cut(s) 380
BccI CCATC 1 cut(s) 68
BciT130I CCWGG 2 cut(s) 106, 420
BclI TGATCA 1 cut(s) 310
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme1390I CCNGG 2 cut(s) 106, 420
Bme18I GGWCC 1 cut(s) 216
BmgT120I GGNCC 1 cut(s) 216
BmiI GGNNCC 2 cut(s) 30, 382
BmrFI CCNGG 2 cut(s) 106, 420
Bpu10I CCTNAGC 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 105
Bsc4I CCNNNNNNNGG 4 cut(s) 197, 213, 289, 425
Bse3DI GCAATG 1 cut(s) 313
BseBI CCWGG 2 cut(s) 106, 420
BseDI CCNNGG 1 cut(s) 105
BseLI CCNNNNNNNGG 4 cut(s) 197, 213, 289, 425
BseMI GCAATG 1 cut(s) 313
BseMII CTCAG 3 cut(s) 133, 240, 308
BseRI GAGGAG 1 cut(s) 197
BshNI GGYRCC 1 cut(s) 380
BslFI GGGAC 2 cut(s) 73, 238
BslI CCNNNNNNNGG 4 cut(s) 197, 213, 289, 425
BsmFI GGGAC 2 cut(s) 73, 238
Bsp143I GATC 1 cut(s) 310
BspACI CCGC 3 cut(s) 5, 207, 257
BspCNI CTCAG 3 cut(s) 132, 241, 307
BspLI GGNNCC 2 cut(s) 30, 382
BspT107I GGYRCC 1 cut(s) 380
BsrDI GCAATG 1 cut(s) 313
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 1 cut(s) 310
Bst2UI CCWGG 2 cut(s) 106, 420
Bst4CI ACNGT 1 cut(s) 28
BstDEI CTNAG 4 cut(s) 119, 249, 294, 450
BstKTI GATC 1 cut(s) 313
BstMBI GATC 1 cut(s) 310
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstNI CCWGG 2 cut(s) 106, 420
BstNSI RCATGY 1 cut(s) 371
BstSCI CCNGG 2 cut(s) 104, 418
BstXI CCANNNNNNTGG 1 cut(s) 226
BtsIMutI CAGTG 2 cut(s) 246, 345
Cfr13I GGNCC 1 cut(s) 216
Csp6I GTAC 1 cut(s) 113
CviAII CATG 3 cut(s) 284, 308, 368
CviQI GTAC 1 cut(s) 113
DdeI CTNAG 4 cut(s) 119, 249, 294, 450
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
DraIII CACNNNGTG 1 cut(s) 461
Eco47I GGWCC 1 cut(s) 216
EcoRII CCWGG 2 cut(s) 104, 418
FaeI CATG 3 cut(s) 287, 311, 371
FaiI YATR 6 cut(s) 285, 301, 309, 362, 369, 466
FaqI GGGAC 2 cut(s) 73, 238
FatI CATG 3 cut(s) 283, 307, 367
FauI CCCGC 1 cut(s) 264
FbaI TGATCA 1 cut(s) 310
Fnu4HI GCNGC 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 207
GluI GCNGC 1 cut(s) 207
Hin1II CATG 3 cut(s) 287, 311, 371
HinfI GANTC 2 cut(s) 86, 251
HphI GGTGA 1 cut(s) 272
Hpy188I TCNGA 3 cut(s) 148, 216, 267
HpyAV CCTTC 1 cut(s) 43
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 2 cut(s) 307, 318
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 4 cut(s) 119, 249, 294, 450
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 3 cut(s) 287, 311, 371
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 1 cut(s) 310
LmnI GCTCC 2 cut(s) 99, 184
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 1 cut(s) 453
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 1 cut(s) 280
MluCI AATT 2 cut(s) 136, 354
MlyI GAGTC 2 cut(s) 95, 260
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 5 cut(s) 154, 160, 175, 220, 405
MspR9I CCNGG 2 cut(s) 106, 420
MvaI CCWGG 2 cut(s) 106, 420
MwoI GCNNNNNNNGC 1 cut(s) 65
NdeII GATC 1 cut(s) 310
NlaIII CATG 3 cut(s) 287, 311, 371
NlaIV GGNNCC 2 cut(s) 30, 382
NmuCI GTSAC 1 cut(s) 453
NspI RCATGY 1 cut(s) 371
PciI ACATGT 1 cut(s) 367
PflMI CCANNNNNTGG 1 cut(s) 289
PkrI GCNGC 1 cut(s) 208
PleI GAGTC 2 cut(s) 94, 259
PpsI GAGTC 2 cut(s) 94, 259
PscI ACATGT 1 cut(s) 367
Psp6I CCWGG 2 cut(s) 104, 418
PspGI CCWGG 2 cut(s) 104, 418
PspN4I GGNNCC 2 cut(s) 30, 382
PspPI GGNCC 1 cut(s) 216
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 1 cut(s) 310
Sau96I GGNCC 1 cut(s) 216
SchI GAGTC 2 cut(s) 95, 260
ScrFI CCNGG 2 cut(s) 106, 420
SetI ASST 7 cut(s) 84, 179, 189, 198, 237, 300, 382
SinI GGWCC 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 2 cut(s) 136, 354
SsiI CCGC 3 cut(s) 5, 207, 257
StyD4I CCNGG 2 cut(s) 104, 418
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 1 cut(s) 198
TaqI TCGA 2 cut(s) 63, 180
TaqII GACCGA 1 cut(s) 68
TasI AATT 2 cut(s) 136, 354
TatI WGTACW 1 cut(s) 112
TauI GCSGC 1 cut(s) 209
TscAI CASTG 2 cut(s) 253, 345
TseFI GTSAC 1 cut(s) 453
Tsp45I GTSAC 1 cut(s) 453
TspDTI ATGAA 2 cut(s) 264, 300
TspRI CASTG 2 cut(s) 253, 345
Van91I CCANNNNNTGG 1 cut(s) 289
VpaK11BI GGWCC 1 cut(s) 216
XceI RCATGY 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.