Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005847

Physical Location & Seq

Genomic Coordinates Forward (+)

26466929 .. 26468551

Gene Structure 1623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g24660.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCATTGACAATGGTGGAGATCCCAGAGCAAAAGCTTTACGACGGAAATCGATTCCCGGCAGTTATATCTCCGACTCCGACTCCAGCAGCAGCTGCTACTCCTGGTCTCACAGAAACCATCCAAGCGAACAAACAGTATATACAGGATCAGCTCCGAAAATCCGGGACTTCAACGACGCCGTGGAGGCCTTCGACTACGAAGAGAATCCTTATGTTGGAACTGCTCCTCGGACCAAGATCGTGGGTCGGGTTTTTACCGCCAACGAGGCCCCACCCGATGTCAAAATTCCGTTTCACCACGAAATGTATCCAGAGTACCCATCCAAACTGTTATTCTTTTGTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TauD

Protein Analysis

117

Amino Acids

13.03

Weight (kDa)

10.02

Isoelectric Point (pI)

52.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21360
fragaria_vesca	FvH4_6g32420 FvH4_6g32420
malus_domestica	MD09G1202600.v1.1 MD10G1294600.v1.1 MD10G1294700.v1.1 MD17G1183800.v1.1
prunus_persica	Prupe.3G058800_v2.0.a1
pyrus_communis	pycom10g24660 pycom17g19320
rosa_chinensis	RchiOBHm_Chr2g0140561 RchiOBHm_Chr2g0140571
rosa_laevigata	RLG00000019878
rosa_multiflora	Rmu_sc0002490.1_g000026 Rmu_sc0002490.1_g000028 Rmu_ssc0000213.1_g000122 Rmu_ssc0000213.1_g000126
rosa_roxburghii	Rroxscaffold_153G00436630 Rroxscaffold_2G00104670
rosa_rugosa	Rorug02G0363600
rosa_samantha	Rh2AG414600 Rh2AG414800 Rh2BG424500 Rh2BG424700 Rh2CG401000 Rh2CG401200 Rh2DG434600
rosa_wichuraiana	Rw2G033970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	260
AclWI	GGATC	2 cut(s)	16, 156
AcsI	RAATTY	1 cut(s)	287
AcyI	GRCGYC	1 cut(s)	179
AfaI	GTAC	1 cut(s)	319
AfiI	CCNNNNNNNGG	1 cut(s)	217
AgsI	TTSAA	1 cut(s)	174
AjnI	CCWGG	1 cut(s)	103
AjuI	GAANNNNNNNTTGG	2 cut(s)	319, 351
AluBI	AGCT	3 cut(s)	37, 95, 154
AluI	AGCT	3 cut(s)	37, 95, 154
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	2 cut(s)	16, 156
AlwNI	CAGNNNCTG	1 cut(s)	95
AoxI	GGCC	2 cut(s)	188, 269
ApeKI	GCWGC	3 cut(s)	89, 92, 95
ApoI	RAATTY	1 cut(s)	287
AspS9I	GGNCC	2 cut(s)	233, 270
AsuC2I	CCSGG	2 cut(s)	59, 166
AsuHPI	GGTGA	1 cut(s)	289
AvaII	GGWCC	1 cut(s)	233
BbvI	GCAGC	3 cut(s)	82, 101, 104
BccI	CCATC	2 cut(s)	128, 330
BceAI	ACGGC	1 cut(s)	166
BciT130I	CCWGG	1 cut(s)	105
BciVI	GTATCC	1 cut(s)	320
BcnI	CCSGG	2 cut(s)	59, 166
BcoDI	GTCTC	1 cut(s)	113
BfuI	GTATCC	1 cut(s)	320
BglI	GCCNNNNNGGC	2 cut(s)	187, 268
BisI	GCNGC	3 cut(s)	90, 93, 96
BlsI	GCNGC	3 cut(s)	91, 94, 97
Bme1390I	CCNGG	3 cut(s)	59, 105, 166
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	2 cut(s)	233, 270
BmiI	GGNNCC	1 cut(s)	272
BmrFI	CCNGG	3 cut(s)	59, 105, 166
BpmI	CTGGAG	1 cut(s)	69
BpuMI	CCSGG	2 cut(s)	59, 166
Bsa29I	ATCGAT	1 cut(s)	52
BsaHI	GRCGYC	1 cut(s)	179
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	182, 229
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
BseBI	CCWGG	1 cut(s)	105
BseCI	ATCGAT	1 cut(s)	52
BseDI	CCNNGG	2 cut(s)	182, 229
BseGI	GGATG	2 cut(s)	120, 322
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseRI	GAGGAG	1 cut(s)	218
BseXI	GCAGC	3 cut(s)	82, 101, 104
BshFI	GGCC	2 cut(s)	190, 271
BshVI	ATCGAT	1 cut(s)	52
BsiSI	CCGG	2 cut(s)	59, 165
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmAI	GTCTC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	2 cut(s)	190, 271
Bso31I	GGTCTC	1 cut(s)	113
Bsp143I	GATC	3 cut(s)	21, 148, 239
BspACI	CCGC	1 cut(s)	260
BspANI	GGCC	2 cut(s)	190, 271
BspDI	ATCGAT	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	272
BspPI	GGATC	2 cut(s)	16, 156
BspTNI	GGTCTC	1 cut(s)	113
BssECI	CCNNGG	2 cut(s)	182, 229
BssMI	GATC	3 cut(s)	21, 148, 239
BssNI	GRCGYC	1 cut(s)	179
Bst2UI	CCWGG	1 cut(s)	105
Bst4CI	ACNGT	2 cut(s)	138, 332
Bst6I	CTCTTC	1 cut(s)	197
BstACI	GRCGYC	1 cut(s)	179
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstDSI	CCRYGG	1 cut(s)	182
BstF5I	GGATG	2 cut(s)	120, 322
BstKTI	GATC	3 cut(s)	24, 151, 242
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	3 cut(s)	21, 148, 239
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 187, 268
BstNI	CCWGG	1 cut(s)	105
BstSCI	CCNGG	3 cut(s)	57, 103, 164
BstV1I	GCAGC	3 cut(s)	82, 101, 104
BstX2I	RGATCY	1 cut(s)	21
BstXI	CCANNNNNNTGG	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	21
Bsu15I	ATCGAT	1 cut(s)	52
BsuI	GTATCC	1 cut(s)	320
BsuRI	GGCC	2 cut(s)	190, 271
BsuTUI	ATCGAT	1 cut(s)	52
BtgI	CCRYGG	1 cut(s)	182
BtsCI	GGATG	2 cut(s)	120, 322
CaiI	CAGNNNCTG	1 cut(s)	95
Cfr13I	GGNCC	2 cut(s)	233, 270
ClaI	ATCGAT	1 cut(s)	52
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	318
CviJI	RGCY	5 cut(s)	37, 95, 154, 190, 271
CviKI_1	RGCY	5 cut(s)	37, 95, 154, 190, 271
CviQI	GTAC	1 cut(s)	318
DpnI	GATC	3 cut(s)	23, 150, 241
DpnII	GATC	3 cut(s)	21, 148, 239
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
Eco147I	AGGCCT	1 cut(s)	190
Eco31I	GGTCTC	1 cut(s)	113
Eco47I	GGWCC	1 cut(s)	233
EcoO109I	RGGNCCY	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	103
FaiI	YATR	4 cut(s)	68, 141, 143, 215
FaqI	GGGAC	1 cut(s)	181
Fnu4HI	GCNGC	3 cut(s)	90, 93, 96
FokI	GGATG	2 cut(s)	107, 309
Fsp4HI	GCNGC	3 cut(s)	90, 93, 96
GluI	GCNGC	3 cut(s)	90, 93, 96
GsuI	CTGGAG	1 cut(s)	69
HaeIII	GGCC	2 cut(s)	190, 271
HapII	CCGG	2 cut(s)	59, 165
HgaI	GACGC	1 cut(s)	187
Hin1I	GRCGYC	1 cut(s)	179
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	4 cut(s)	54, 76, 82, 207
HpaII	CCGG	2 cut(s)	59, 165
HphI	GGTGA	1 cut(s)	289
Hpy188I	TCNGA	4 cut(s)	75, 81, 158, 233
Hpy188III	TCNNGA	1 cut(s)	313
Hpy99I	CGWCG	2 cut(s)	47, 181
HpyAV	CCTTC	1 cut(s)	201
HpyCH4III	ACNGT	2 cut(s)	138, 332
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 187, 268
Hsp92I	GRCGYC	1 cut(s)	179
Kzo9I	GATC	3 cut(s)	21, 148, 239
LmnI	GCTCC	2 cut(s)	159, 231
LpnPI	CCDG	8 cut(s)	39, 72, 90, 99, 117, 131, 178, 326
Lsp1109I	GCAGC	3 cut(s)	82, 101, 104
MalI	GATC	3 cut(s)	23, 150, 241
MboI	GATC	3 cut(s)	21, 148, 239
MboII	GAAGA	1 cut(s)	214
MflI	RGATCY	1 cut(s)	21
MluCI	AATT	1 cut(s)	287
MlyI	GAGTC	2 cut(s)	70, 76
MmeI	TCCRAC	3 cut(s)	98, 104, 198
MnlI	CCTC	3 cut(s)	180, 239, 261
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	2 cut(s)	59, 165
MspR9I	CCNGG	3 cut(s)	59, 105, 166
MvaI	CCWGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	3 cut(s)	95, 187, 268
NciI	CCSGG	2 cut(s)	59, 166
NdeII	GATC	3 cut(s)	21, 148, 239
NlaIV	GGNNCC	1 cut(s)	272
PceI	AGGCCT	1 cut(s)	190
PfeI	GAWTC	2 cut(s)	54, 207
PfoI	TCCNGGA	1 cut(s)	164
PkrI	GCNGC	3 cut(s)	91, 94, 97
PleI	GAGTC	2 cut(s)	70, 76
PpsI	GAGTC	2 cut(s)	70, 76
Psp6I	CCWGG	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	272
PspPI	GGNCC	2 cut(s)	233, 270
PstNI	CAGNNNCTG	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	21
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
SatI	GCNGC	3 cut(s)	90, 93, 96
Sau3AI	GATC	3 cut(s)	21, 148, 239
Sau96I	GGNCC	2 cut(s)	233, 270
SchI	GAGTC	2 cut(s)	70, 76
ScrFI	CCNGG	3 cut(s)	59, 105, 166
SetI	ASST	3 cut(s)	39, 97, 156
SinI	GGWCC	1 cut(s)	233
Sse9I	AATT	1 cut(s)	287
SseBI	AGGCCT	1 cut(s)	190
SsiI	CCGC	1 cut(s)	260
StuI	AGGCCT	1 cut(s)	190
StyD4I	CCNGG	3 cut(s)	57, 103, 164
TaaI	ACNGT	2 cut(s)	138, 332
TaqI	TCGA	2 cut(s)	52, 194
TasI	AATT	1 cut(s)	287
TfiI	GAWTC	2 cut(s)	54, 207
TseI	GCWGC	3 cut(s)	89, 92, 95
TspGWI	ACGGA	2 cut(s)	60, 281
VpaK11BI	GGWCC	1 cut(s)	233
XapI	RAATTY	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.